RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 NDUFS5O43920 106 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 IGKV1-17P01599 117 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 IGKV1-5P01602 117 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 ATF1P18846 271 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 SLC25A3Q00325 362 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 Q1RN00 199 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 SPAG11AQ6PDA7 123 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 Q6ZRU5 148 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 STX12Q86Y82 276 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 CLECL1Q8IZS7 167 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 PARP16Q8N5Y8 322 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 VSIG2Q96IQ7 327 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 AICDAQ9GZX7 198 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 TMPRSS5Q9H3S3 457 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 MRPS16Q9Y3D3 137 aaKnown RBP1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 OR51B2Q9Y5P1 312 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 ATMQ13315 3056 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 DLG5Q8TDM6 1919 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 A0A0A6YYD5 115 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 A0A0A6YYH2 397 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 A6NJ64 397 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 FOXI3A8MTJ6 420 aaPredicted RBP1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 RPL36A-HNRNPH2H7BZ11 118 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 GPR31O00270 319 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 FABP3P05413 133 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 CDC34P49427 236 aaPredicted RBP1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 KRTAP1-1Q07627 177 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 HIGD2BQ4VC39 106 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 CYBRD1Q53TN4 286 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 PAGE3Q5JUK9 113 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 PQLC2Q6ZP29 291 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 ZNF818PQ6ZRF7 136 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 C18orf65Q6ZTR6 163 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 FAM19A5Q7Z5A7 132 aaPredicted RBP1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 OR8J1Q8NGP2 316 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 FAM131CQ96AQ9 280 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 DGCR14Q96DF8 476 aaKnown RBP1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 S100A16Q96FQ6 103 aaKnown RBP1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 ZIM3Q96PE6 472 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 ALKBH7Q9BT30 221 aaPredicted RBP1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 SPXQ9BT56 116 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 AUNIPQ9H7T9 357 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 APLNQ9ULZ1 77 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 VWFP04275 2813 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 DENND4AQ7Z401 1863 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 KMT2EQ8IZD2 1858 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 SERTM2A0A1B0GWG4 89 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 DUXBA0A1W2PPF3 345 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 ATP5LO75964 103 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 IGLV1-44P01699 117 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 DNAH10OSP0CZ25 163 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 CRISP2P16562 243 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 RAB3BP20337 219 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 OR10J1P30954 320 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 POLR2IP36954 125 aaKnown RBP1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 MAGOHP61326 146 aaKnown RBP1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 RPL24P83731 157 aaKnown RBP1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 RGNQ15493 299 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 IQCJQ1A5X6 159 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 TCTE3Q8IZS6 198 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 Q8TCH9 128 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 C15orf40Q8WUR7 153 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 ERGIC2Q96RQ1 377 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 PYGO2Q9BRQ0 406 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 MARVELD1Q9BSK0 173 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 X6R8D5 127 aa1.97□□□□□ -2.09
CCDC88A-205ENST00000426576 TRBV5-4A0A0C4DH59 114 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 M0R2Z0 102 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 ICMTO60725 284 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 NPPAP01160 153 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 TCRBP04435 133 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 MARCKSL1P49006 195 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 BRWD1-AS2P59051 145 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 ZNF74Q16587 644 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 MPV17LQ2QL34 196 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 AARDQ4LEZ3 155 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 FAM76BQ5HYJ3 339 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 GLIPR1L1Q6UWM5 242 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 CBLN2Q8IUK8 224 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 SLC35F6Q8N357 371 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 PACRGLQ8N7B6 248 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 OR10G4Q8NGN3 311 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 RTN4IP1Q8WWV3 396 aaPredicted RBP1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 GAFA1Q96PS6 74 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 GSKIPQ9P0R6 139 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 B9D1Q9UPM9 204 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 MYH3P11055 1940 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 PLAC8L1A1L4L8 177 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 C17orf112F2Z3M2 114 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 J3QRE1 110 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 KBTBD11O94819 623 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 SFTA3P0C7M3 94 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 IL12AP29459 219 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 RASSF2P50749 326 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 ZNF134P52741 427 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 NKX2-5P52952 324 aaPredicted RBP1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 PRSS8Q16651 343 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 DHRS4L2Q6PKH6 230 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 SLC35F2Q8IXU6 374 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 SLC7A5P1Q8MH63 180 aa1.96□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms