RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 OPCMLQ14982 345 aa13.67□□□□□ -0.22
SF3A1-202ENST00000411423 PXDC1Q5TGL8 231 aa13.67□□□□□ -0.22
SF3A1-202ENST00000411423 OR11H7Q8NGC8 314 aa13.67□□□□□ -0.22
SF3A1-202ENST00000411423 MARVELD1Q9BSK0 173 aa13.67□□□□□ -0.22
SF3A1-202ENST00000411423 GPN1Q9HCN4 374 aaPredicted RBP13.67□□□□□ -0.22
SF3A1-202ENST00000411423 H3BTX0 84 aa13.66□□□□□ -0.22
SF3A1-202ENST00000411423 SLC17A3O00476 420 aa13.66□□□□□ -0.22
SF3A1-202ENST00000411423 PRM2P04554 102 aa13.66□□□□□ -0.22
SF3A1-202ENST00000411423 ZNF738Q8NE65 137 aa13.66□□□□□ -0.22
SF3A1-202ENST00000411423 DNAH6Q9C0G6 4158 aa13.66□□□□□ -0.22
SF3A1-202ENST00000411423 DNAH10Q8IVF4 4471 aa13.65□□□□□ -0.22
SF3A1-202ENST00000411423 M0R2Z0 102 aa13.65□□□□□ -0.22
SF3A1-202ENST00000411423 COX7A2P2O60397 106 aa13.65□□□□□ -0.22
SF3A1-202ENST00000411423 S100A11P31949 105 aa13.65□□□□□ -0.22
SF3A1-202ENST00000411423 H2BFSP57053 126 aa13.65□□□□□ -0.22
SF3A1-202ENST00000411423 NHLH2Q02577 135 aa13.65□□□□□ -0.22
SF3A1-202ENST00000411423 SPINK13Q1W4C9 94 aa13.65□□□□□ -0.22
SF3A1-202ENST00000411423 C2CD4CQ8TF44 421 aa13.65□□□□□ -0.22
SF3A1-202ENST00000411423 APLNQ9ULZ1 77 aa13.65□□□□□ -0.22
SF3A1-202ENST00000411423 H3BQ15 152 aa13.64□□□□□ -0.23
SF3A1-202ENST00000411423 PRAF2O60831 178 aa13.64□□□□□ -0.23
SF3A1-202ENST00000411423 BAXQ07812 192 aa13.64□□□□□ -0.23
SF3A1-202ENST00000411423 PSG3Q16557 428 aa13.64□□□□□ -0.23
SF3A1-202ENST00000411423 LRRC37A5PQ49AS3 106 aa13.64□□□□□ -0.23
SF3A1-202ENST00000411423 C10orf113Q5VZT2 155 aa13.64□□□□□ -0.23
SF3A1-202ENST00000411423 NMES1Q9C002 83 aa13.64□□□□□ -0.23
SF3A1-202ENST00000411423 ZNF331Q9NQX6 463 aaPredicted RBP13.64□□□□□ -0.23
SF3A1-202ENST00000411423 IGLL5B9A064 214 aa13.63□□□□□ -0.23
SF3A1-202ENST00000411423 IGLC2P0DOY2 106 aa13.63□□□□□ -0.23
SF3A1-202ENST00000411423 FGF7P21781 194 aa13.63□□□□□ -0.23
SF3A1-202ENST00000411423 RPL29P47914 159 aaKnown RBP13.63□□□□□ -0.23
SF3A1-202ENST00000411423 EMP1P54849 157 aa13.63□□□□□ -0.23
SF3A1-202ENST00000411423 STX12Q86Y82 276 aa13.63□□□□□ -0.23
SF3A1-202ENST00000411423 RPP25LQ8N5L8 163 aaKnown RBP13.63□□□□□ -0.23
SF3A1-202ENST00000411423 DNAJC4Q9NNZ3 241 aa13.63□□□□□ -0.23
SF3A1-202ENST00000411423 SLC39A9Q9NUM3 307 aa13.63□□□□□ -0.23
SF3A1-202ENST00000411423 PLA2G2EQ9NZK7 142 aa13.63□□□□□ -0.23
SF3A1-202ENST00000411423 C11orf94C9JXX5 98 aa13.62□□□□□ -0.23
SF3A1-202ENST00000411423 DUSP14O95147 198 aaKnown RBP13.62□□□□□ -0.23
SF3A1-202ENST00000411423 B2MP61769 119 aa13.62□□□□□ -0.23
SF3A1-202ENST00000411423 GCSAMLQ5JQS6 135 aa13.62□□□□□ -0.23
SF3A1-202ENST00000411423 LGALS9CQ6DKI2 356 aa13.62□□□□□ -0.23
SF3A1-202ENST00000411423 BAP18Q8IXM2 172 aa13.62□□□□□ -0.23
SF3A1-202ENST00000411423 OR8A1Q8NGG7 326 aa13.62□□□□□ -0.23
SF3A1-202ENST00000411423 CHAC2Q8WUX2 184 aa13.62□□□□□ -0.23
SF3A1-202ENST00000411423 SAT2Q96F10 170 aaPredicted RBP13.62□□□□□ -0.23
SF3A1-202ENST00000411423 IGF2BP2-AS1Q96M15 143 aa13.62□□□□□ -0.23
SF3A1-202ENST00000411423 PXMP4Q9Y6I8 212 aa13.62□□□□□ -0.23
SF3A1-202ENST00000411423 FRAS1Q86XX4 4008 aa13.61□□□□□ -0.23
SF3A1-202ENST00000411423 TRAV12-2A0A075B6T6 113 aa13.61□□□□□ -0.23
SF3A1-202ENST00000411423 TRAV10A0A0B4J240 114 aa13.61□□□□□ -0.23
SF3A1-202ENST00000411423 SMIM9A6NGZ8 99 aa13.61□□□□□ -0.23
SF3A1-202ENST00000411423 PRAC2D3DTV9 90 aa13.61□□□□□ -0.23
SF3A1-202ENST00000411423 CXCL2P19875 107 aa13.61□□□□□ -0.23
SF3A1-202ENST00000411423 HBG1P69891 147 aa13.61□□□□□ -0.23
SF3A1-202ENST00000411423 HBG2P69892 147 aa13.61□□□□□ -0.23
SF3A1-202ENST00000411423 HIST1H1AQ02539 215 aaPredicted RBP13.61□□□□□ -0.23
SF3A1-202ENST00000411423 BPIFA4PQ86YQ2 179 aa13.61□□□□□ -0.23
SF3A1-202ENST00000411423 THAP6Q8TBB0 222 aa13.61□□□□□ -0.23
SF3A1-202ENST00000411423 RNF126Q9BV68 326 aa13.61□□□□□ -0.23
SF3A1-202ENST00000411423 GOLT1BQ9Y3E0 138 aa13.61□□□□□ -0.23
SF3A1-202ENST00000411423 RFNGQ9Y644 331 aa13.61□□□□□ -0.23
SF3A1-202ENST00000411423 RAB31Q13636 194 aa13.6□□□□□ -0.23
SF3A1-202ENST00000411423 ATP6V1FQ16864 119 aa13.6□□□□□ -0.23
SF3A1-202ENST00000411423 LCN15Q6UWW0 184 aa13.6□□□□□ -0.23
SF3A1-202ENST00000411423 Q6ZRG5 221 aa13.6□□□□□ -0.23
SF3A1-202ENST00000411423 S100A7AQ86SG5 101 aa13.6□□□□□ -0.23
SF3A1-202ENST00000411423 OR5C1Q8NGR4 320 aa13.6□□□□□ -0.23
SF3A1-202ENST00000411423 LRRC20Q8TCA0 184 aa13.6□□□□□ -0.23
SF3A1-202ENST00000411423 RPUSD4Q96CM3 377 aaKnown RBP13.6□□□□□ -0.23
SF3A1-202ENST00000411423 NPCDR1Q9BY65 106 aa13.6□□□□□ -0.23
SF3A1-202ENST00000411423 ZNF586Q9NXT0 402 aa13.6□□□□□ -0.23
SF3A1-202ENST00000411423 DKK2Q9UBU2 259 aa13.6□□□□□ -0.23
SF3A1-202ENST00000411423 IGHV4-4A0A075B6R2 117 aa13.59□□□□□ -0.23
SF3A1-202ENST00000411423 LOC102723971A0A1B0GUV8 181 aa13.59□□□□□ -0.23
SF3A1-202ENST00000411423 E5RGE8 158 aa13.59□□□□□ -0.23
SF3A1-202ENST00000411423 BOLA2-SMG1P6H3BVE0 249 aa13.59□□□□□ -0.23
SF3A1-202ENST00000411423 KIR3DS1Q14943 382 aa13.59□□□□□ -0.23
SF3A1-202ENST00000411423 FAM222AQ5U5X8 452 aa13.59□□□□□ -0.23
SF3A1-202ENST00000411423 OR1L4Q8NGR5 311 aa13.59□□□□□ -0.23
SF3A1-202ENST00000411423 PPP1R1CQ8WVI7 109 aa13.59□□□□□ -0.23
SF3A1-202ENST00000411423 PARD6GQ9BYG4 376 aaPredicted RBP13.59□□□□□ -0.23
SF3A1-202ENST00000411423 DEFB131BA0A096LNP1 70 aa13.58□□□□□ -0.24
SF3A1-202ENST00000411423 ZNF705GA8MUZ8 300 aaPredicted RBP13.58□□□□□ -0.24
SF3A1-202ENST00000411423 DEFA1P59665 94 aa13.58□□□□□ -0.24
SF3A1-202ENST00000411423 DEFA3P59666 94 aa13.58□□□□□ -0.24
SF3A1-202ENST00000411423 CLINT1Q14677 625 aa13.58□□□□□ -0.24
SF3A1-202ENST00000411423 SLC50A1Q9BRV3 221 aa13.58□□□□□ -0.24
SF3A1-202ENST00000411423 YTHDF2Q9Y5A9 579 aaKnown RBP13.58□□□□□ -0.24
SF3A1-202ENST00000411423 TMEM189A5PLL7 270 aa13.57□□□□□ -0.24
SF3A1-202ENST00000411423 HBE1P02100 147 aa13.57□□□□□ -0.24
SF3A1-202ENST00000411423 RLN2P04090 185 aa13.57□□□□□ -0.24
SF3A1-202ENST00000411423 SPART-AS1P0CW21 52 aa13.57□□□□□ -0.24
SF3A1-202ENST00000411423 AZU1P20160 251 aa13.57□□□□□ -0.24
SF3A1-202ENST00000411423 RHOBP62745 196 aa13.57□□□□□ -0.24
SF3A1-202ENST00000411423 RRN3P1Q2M238 152 aa13.57□□□□□ -0.24
SF3A1-202ENST00000411423 PFDN5Q99471 154 aa13.57□□□□□ -0.24
SF3A1-202ENST00000411423 RNF24Q9Y225 148 aa13.57□□□□□ -0.24
SF3A1-202ENST00000411423 PLAC8L1A1L4L8 177 aa13.56□□□□□ -0.24
SF3A1-202ENST00000411423 SSNA1O43805 119 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms