RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 GATA3P23771 443 aa6.47□□□□□ -1.37
SYNE1-210ENST00000409694 TMEM243Q9BU79 118 aa6.47□□□□□ -1.37
SYNE1-210ENST00000409694 RNF126Q9BV68 326 aa6.47□□□□□ -1.37
SYNE1-210ENST00000409694 OBSL1O75147 1896 aa6.47□□□□□ -1.37
SYNE1-210ENST00000409694 K7EMI3 77 aa6.46□□□□□ -1.37
SYNE1-210ENST00000409694 MCRIP2Q9BUT9 160 aaKnown RBP6.46□□□□□ -1.37
SYNE1-210ENST00000409694 TP53TG1Q9Y2A0 90 aa6.46□□□□□ -1.37
SYNE1-210ENST00000409694 ABCA7Q8IZY2 2146 aa6.46□□□□□ -1.37
SYNE1-210ENST00000409694 LOC101059948A0A1B0GTJ6 334 aa6.46□□□□□ -1.37
SYNE1-210ENST00000409694 KLHL30-AS1Q8NEE0 82 aa6.46□□□□□ -1.37
SYNE1-210ENST00000409694 PRO1854Q9UHT4 67 aa6.46□□□□□ -1.37
SYNE1-210ENST00000409694 KNCNA6PVL3 124 aa6.46□□□□□ -1.37
SYNE1-210ENST00000409694 SMIM10L1P0DMW3 83 aa6.46□□□□□ -1.37
SYNE1-210ENST00000409694 IGFBP6P24592 240 aaPredicted RBP6.46□□□□□ -1.37
SYNE1-210ENST00000409694 SMIM10Q96HG1 83 aa6.46□□□□□ -1.37
SYNE1-210ENST00000409694 CARD19Q96LW7 228 aa6.46□□□□□ -1.37
SYNE1-210ENST00000409694 WDR83OSQ9Y284 106 aa6.46□□□□□ -1.37
SYNE1-210ENST00000409694 FGF6P10767 208 aa6.46□□□□□ -1.38
SYNE1-210ENST00000409694 PPP1R32Q7Z5V6 425 aa6.46□□□□□ -1.38
SYNE1-210ENST00000409694 CEND1Q8N111 149 aa6.46□□□□□ -1.38
SYNE1-210ENST00000409694 PRSS46E5RG02 174 aa6.46□□□□□ -1.38
SYNE1-210ENST00000409694 CADP27708 2225 aa6.46□□□□□ -1.38
SYNE1-210ENST00000409694 Q8N8P6 123 aa6.46□□□□□ -1.38
SYNE1-210ENST00000409694 BAALCQ8WXS3 180 aa6.46□□□□□ -1.38
SYNE1-210ENST00000409694 B4DSR2 109 aa6.46□□□□□ -1.38
SYNE1-210ENST00000409694 VWC2Q2TAL6 325 aa6.46□□□□□ -1.38
SYNE1-210ENST00000409694 ATOX1O00244 68 aa6.46□□□□□ -1.38
SYNE1-210ENST00000409694 ZNF329Q86UD4 541 aa6.46□□□□□ -1.38
SYNE1-210ENST00000409694 BMPERQ8N8U9 685 aa6.46□□□□□ -1.38
SYNE1-210ENST00000409694 SCRT1Q9BWW7 348 aa6.46□□□□□ -1.38
SYNE1-210ENST00000409694 AMN1Q8IY45 258 aa6.45□□□□□ -1.38
SYNE1-210ENST00000409694 SLC25A45Q8N413 288 aa6.45□□□□□ -1.38
SYNE1-210ENST00000409694 PCNX2A6NKB5 2137 aa6.45□□□□□ -1.38
SYNE1-210ENST00000409694 SIVA1O15304 175 aa6.45□□□□□ -1.38
SYNE1-210ENST00000409694 GREM1O60565 184 aa6.45□□□□□ -1.38
SYNE1-210ENST00000409694 SYNJ2BPP57105 145 aa6.45□□□□□ -1.38
SYNE1-210ENST00000409694 C1QL2Q7Z5L3 287 aa6.45□□□□□ -1.38
SYNE1-210ENST00000409694 PLAC1Q9HBJ0 212 aa6.45□□□□□ -1.38
SYNE1-210ENST00000409694 E9PLN8 166 aa6.45□□□□□ -1.38
SYNE1-210ENST00000409694 K7ERS5 55 aa6.45□□□□□ -1.38
SYNE1-210ENST00000409694 DOPEY2Q9Y3R5 2298 aa6.45□□□□□ -1.38
SYNE1-210ENST00000409694 IGHV1-3A0A0C4DH29 117 aa6.45□□□□□ -1.38
SYNE1-210ENST00000409694 FAM27E3Q08E93 113 aa6.45□□□□□ -1.38
SYNE1-210ENST00000409694 Q86TA4 180 aa6.45□□□□□ -1.38
SYNE1-210ENST00000409694 GAGE7O76087 117 aa6.45□□□□□ -1.38
SYNE1-210ENST00000409694 GAGE12FP0CL80 117 aa6.45□□□□□ -1.38
SYNE1-210ENST00000409694 GAGE12GP0CL81 117 aa6.45□□□□□ -1.38
SYNE1-210ENST00000409694 GAGE12IP0CL82 117 aa6.45□□□□□ -1.38
SYNE1-210ENST00000409694 DMRTC2Q8IXT2 367 aaPredicted RBP6.45□□□□□ -1.38
SYNE1-210ENST00000409694 IGHV1-8P0DP01 117 aa6.45□□□□□ -1.38
SYNE1-210ENST00000409694 SVIPQ8NHG7 77 aa6.45□□□□□ -1.38
SYNE1-210ENST00000409694 ID3Q02535 119 aa6.45□□□□□ -1.38
SYNE1-210ENST00000409694 Q0VG73 95 aa6.45□□□□□ -1.38
SYNE1-210ENST00000409694 FAM219BQ5XKK7 198 aa6.45□□□□□ -1.38
SYNE1-210ENST00000409694 ZNF492Q9P255 531 aa6.45□□□□□ -1.38
SYNE1-210ENST00000409694 PFN1P07737 140 aaKnown RBP6.45□□□□□ -1.38
SYNE1-210ENST00000409694 C3orf79P0CE67 100 aa6.45□□□□□ -1.38
SYNE1-210ENST00000409694 ADAMTS7Q9UKP4 1686 aa6.45□□□□□ -1.38
SYNE1-210ENST00000409694 ALPK2Q86TB3 2170 aa6.45□□□□□ -1.38
SYNE1-210ENST00000409694 GAGE12HA6NDE8 117 aa6.45□□□□□ -1.38
SYNE1-210ENST00000409694 CD55P08174 381 aa6.45□□□□□ -1.38
SYNE1-210ENST00000409694 EFNA4P52798 201 aa6.44□□□□□ -1.38
SYNE1-210ENST00000409694 C5orf64Q2M2E5 130 aa6.44□□□□□ -1.38
SYNE1-210ENST00000409694 PIP4P2Q8N4L2 257 aa6.44□□□□□ -1.38
SYNE1-210ENST00000409694 LINC01356Q8N9X3 169 aa6.44□□□□□ -1.38
SYNE1-210ENST00000409694 F5H768 121 aa6.44□□□□□ -1.38
SYNE1-210ENST00000409694 SLC25A16P16260 332 aa6.44□□□□□ -1.38
SYNE1-210ENST00000409694 PYY3Q5JQD4 70 aa6.44□□□□□ -1.38
SYNE1-210ENST00000409694 C8orf31Q8N9H6 132 aa6.44□□□□□ -1.38
SYNE1-210ENST00000409694 KLHDC3Q9BQ90 382 aa6.44□□□□□ -1.38
SYNE1-210ENST00000409694 A0A1W2PPM0 123 aa6.44□□□□□ -1.38
SYNE1-210ENST00000409694 IGHV3-53P01767 116 aa6.44□□□□□ -1.38
SYNE1-210ENST00000409694 C9JQL5 133 aa6.44□□□□□ -1.38
SYNE1-210ENST00000409694 UBE2BP63146 152 aa6.44□□□□□ -1.38
SYNE1-210ENST00000409694 CSRP2Q16527 193 aa6.44□□□□□ -1.38
SYNE1-210ENST00000409694 C19orf48Q6RUI8 117 aa6.44□□□□□ -1.38
SYNE1-210ENST00000409694 R3HDMLQ9H3Y0 253 aa6.44□□□□□ -1.38
SYNE1-210ENST00000409694 CXCL1P09341 107 aa6.44□□□□□ -1.38
SYNE1-210ENST00000409694 AZU1P20160 251 aa6.44□□□□□ -1.38
SYNE1-210ENST00000409694 HERV-K104P63124 156 aa6.44□□□□□ -1.38
SYNE1-210ENST00000409694 A0A0A6YYD4 124 aa6.43□□□□□ -1.38
SYNE1-210ENST00000409694 RNASE2P10153 161 aaKnown RBP6.43□□□□□ -1.38
SYNE1-210ENST00000409694 RSPO4Q2I0M5 234 aaPredicted RBP6.43□□□□□ -1.38
SYNE1-210ENST00000409694 SP7Q8TDD2 431 aaPredicted RBP6.43□□□□□ -1.38
SYNE1-210ENST00000409694 A0A087WWL8 130 aa6.43□□□□□ -1.38
SYNE1-210ENST00000409694 PRSS47A8MTI9 375 aa6.43□□□□□ -1.38
SYNE1-210ENST00000409694 CFHR4Q92496 578 aa6.43□□□□□ -1.38
SYNE1-210ENST00000409694 NAA38Q9BRA0 125 aaKnown RBP6.43□□□□□ -1.38
SYNE1-210ENST00000409694 MESP1Q9BRJ9 268 aa6.43□□□□□ -1.38
SYNE1-210ENST00000409694 COL18A1P39060 1754 aa6.43□□□□□ -1.38
SYNE1-210ENST00000409694 COLCA2A8K830 154 aa6.43□□□□□ -1.38
SYNE1-210ENST00000409694 SIGLEC12Q96PQ1 595 aa6.43□□□□□ -1.38
SYNE1-210ENST00000409694 TRAV12-1A0A0B4J245 112 aa6.43□□□□□ -1.38
SYNE1-210ENST00000409694 PRSS29PA6NIE9 313 aa6.43□□□□□ -1.38
SYNE1-210ENST00000409694 HLA-DRB4P13762 266 aa6.43□□□□□ -1.38
SYNE1-210ENST00000409694 C20orf144Q9BQM9 153 aa6.43□□□□□ -1.38
SYNE1-210ENST00000409694 ZMAT4Q9H898 229 aa6.43□□□□□ -1.38
SYNE1-210ENST00000409694 TSSC4Q9Y5U2 329 aaPredicted RBP6.43□□□□□ -1.38
SYNE1-210ENST00000409694 HLA-DRB4X5D2U9 266 aa6.43□□□□□ -1.38
SYNE1-210ENST00000409694 PROP1O75360 226 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms