RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 ZNF688P0C7X2 276 aa11.86□□□□□ -0.51
HMGA1-204ENST00000401473 C4BPBP20851 252 aa11.86□□□□□ -0.51
HMGA1-204ENST00000401473 ZNF124Q15973 351 aa11.86□□□□□ -0.51
HMGA1-204ENST00000401473 FXYD5Q96DB9 178 aa11.86□□□□□ -0.51
HMGA1-204ENST00000401473 TRAV8-2A0A0B4J237 113 aa11.85□□□□□ -0.51
HMGA1-204ENST00000401473 SLC17A3O00476 420 aa11.85□□□□□ -0.51
HMGA1-204ENST00000401473 OR7C2O60412 319 aa11.85□□□□□ -0.51
HMGA1-204ENST00000401473 STAG3L2P0CL84 134 aa11.85□□□□□ -0.51
HMGA1-204ENST00000401473 STAG3L3P0CL85 134 aa11.85□□□□□ -0.51
HMGA1-204ENST00000401473 ATF4P18848 351 aaPredicted RBP11.85□□□□□ -0.51
HMGA1-204ENST00000401473 GTSCR1Q86UQ5 136 aa11.85□□□□□ -0.51
HMGA1-204ENST00000401473 RNF141Q8WVD5 230 aa11.85□□□□□ -0.51
HMGA1-204ENST00000401473 PAXXQ9BUH6 204 aa11.85□□□□□ -0.51
HMGA1-204ENST00000401473 ACTR3CQ9C0K3 210 aaPredicted RBP11.85□□□□□ -0.51
HMGA1-204ENST00000401473 NBEAP1P0C6P0 100 aa11.85□□□□□ -0.51
HMGA1-204ENST00000401473 HIST1H1EP10412 219 aaKnown RBP11.85□□□□□ -0.51
HMGA1-204ENST00000401473 APRG1Q8IVJ8 170 aa11.85□□□□□ -0.51
HMGA1-204ENST00000401473 DEFB125Q8N687 156 aa11.85□□□□□ -0.51
HMGA1-204ENST00000401473 CITED4Q96RK1 184 aa11.85□□□□□ -0.51
HMGA1-204ENST00000401473 MAP6D1Q9H9H5 199 aa11.85□□□□□ -0.51
HMGA1-204ENST00000401473 COL7A1Q02388 2944 aa11.84□□□□□ -0.51
HMGA1-204ENST00000401473 TRBV19A0A075B6N1 114 aa11.84□□□□□ -0.51
HMGA1-204ENST00000401473 OR11H12B2RN74 326 aa11.84□□□□□ -0.51
HMGA1-204ENST00000401473 UMAD1C9J7I0 102 aa11.84□□□□□ -0.51
HMGA1-204ENST00000401473 NDUFB4O95168 129 aa11.84□□□□□ -0.51
HMGA1-204ENST00000401473 ARL14EPLP0DKL9 152 aa11.84□□□□□ -0.51
HMGA1-204ENST00000401473 HLA-DMBP28068 263 aa11.84□□□□□ -0.51
HMGA1-204ENST00000401473 TAS2R45P59539 299 aa11.84□□□□□ -0.51
HMGA1-204ENST00000401473 KHDC3LQ587J8 217 aa11.84□□□□□ -0.51
HMGA1-204ENST00000401473 C16orf92Q96LL3 132 aa11.84□□□□□ -0.51
HMGA1-204ENST00000401473 C20orf173Q96LM9 149 aa11.84□□□□□ -0.51
HMGA1-204ENST00000401473 TGP01266 2768 aa11.83□□□□□ -0.51
HMGA1-204ENST00000401473 ISLRO14498 428 aa11.83□□□□□ -0.52
HMGA1-204ENST00000401473 MEOX2P50222 304 aa11.83□□□□□ -0.52
HMGA1-204ENST00000401473 DEFB131AP59861 70 aa11.83□□□□□ -0.52
HMGA1-204ENST00000401473 DEFB1P60022 68 aa11.83□□□□□ -0.52
HMGA1-204ENST00000401473 FAM74A1Q5RGS3 127 aa11.83□□□□□ -0.52
HMGA1-204ENST00000401473 ALKAL2Q6UX46 152 aa11.83□□□□□ -0.52
HMGA1-204ENST00000401473 RNF182Q8N6D2 247 aa11.83□□□□□ -0.52
HMGA1-204ENST00000401473 BLNKQ8WV28 456 aa11.83□□□□□ -0.52
HMGA1-204ENST00000401473 FAM110AQ9BQ89 295 aa11.83□□□□□ -0.52
HMGA1-204ENST00000401473 ZNF331Q9NQX6 463 aaPredicted RBP11.83□□□□□ -0.52
HMGA1-204ENST00000401473 CTXND1A0A1B0GTU2 59 aa11.83□□□□□ -0.52
HMGA1-204ENST00000401473 PSMG4Q5JS54 123 aa11.83□□□□□ -0.52
HMGA1-204ENST00000401473 EIF5AL1Q6IS14 154 aaKnown RBP11.83□□□□□ -0.52
HMGA1-204ENST00000401473 PQLC2Q6ZP29 291 aa11.83□□□□□ -0.52
HMGA1-204ENST00000401473 PRB4P10163 310 aaPredicted RBP11.82□□□□□ -0.52
HMGA1-204ENST00000401473 SULT1A2P50226 295 aa11.82□□□□□ -0.52
HMGA1-204ENST00000401473 FGF8P55075 233 aaPredicted RBP11.82□□□□□ -0.52
HMGA1-204ENST00000401473 LCN15Q6UWW0 184 aa11.82□□□□□ -0.52
HMGA1-204ENST00000401473 FAM213BQ8TBF2 198 aa11.82□□□□□ -0.52
HMGA1-204ENST00000401473 LINC00052Q96N35 136 aa11.82□□□□□ -0.52
HMGA1-204ENST00000401473 PSMB3P49720 205 aa11.81□□□□□ -0.52
HMGA1-204ENST00000401473 SNRPD3P62318 126 aaKnown RBP11.81□□□□□ -0.52
HMGA1-204ENST00000401473 GUK1Q16774 197 aa11.81□□□□□ -0.52
HMGA1-204ENST00000401473 LRRC20Q8TCA0 184 aa11.81□□□□□ -0.52
HMGA1-204ENST00000401473 PHYHIPLQ96FC7 376 aa11.81□□□□□ -0.52
HMGA1-204ENST00000401473 TMPRSS5Q9H3S3 457 aa11.81□□□□□ -0.52
HMGA1-204ENST00000401473 IGHV4-30-4P0DP06 118 aa11.8□□□□□ -0.52
HMGA1-204ENST00000401473 UBE2L3P68036 154 aaKnown RBP11.8□□□□□ -0.52
HMGA1-204ENST00000401473 GCHFRP30047 84 aa11.8□□□□□ -0.52
HMGA1-204ENST00000401473 ID1P41134 155 aa11.8□□□□□ -0.52
HMGA1-204ENST00000401473 GDF5OSQ5U4N7 250 aa11.8□□□□□ -0.52
HMGA1-204ENST00000401473 EXOC3-AS1Q8N2X6 119 aa11.8□□□□□ -0.52
HMGA1-204ENST00000401473 SUN5Q8TC36 379 aa11.8□□□□□ -0.52
HMGA1-204ENST00000401473 MBD3L1Q8WWY6 194 aa11.8□□□□□ -0.52
HMGA1-204ENST00000401473 ZNF705FA8MVS1 300 aaPredicted RBP11.79□□□□□ -0.52
HMGA1-204ENST00000401473 F6UB75 175 aa11.79□□□□□ -0.52
HMGA1-204ENST00000401473 ZNF253O75346 499 aa11.79□□□□□ -0.52
HMGA1-204ENST00000401473 CXorf1O96002 111 aa11.79□□□□□ -0.52
HMGA1-204ENST00000401473 RANP62826 216 aaKnown RBP11.79□□□□□ -0.52
HMGA1-204ENST00000401473 PDE6HQ13956 83 aa11.79□□□□□ -0.52
HMGA1-204ENST00000401473 DPPA3Q6W0C5 159 aa11.79□□□□□ -0.52
HMGA1-204ENST00000401473 SFT2D1Q8WV19 159 aa11.79□□□□□ -0.52
HMGA1-204ENST00000401473 SLC50A1Q9BRV3 221 aa11.79□□□□□ -0.52
HMGA1-204ENST00000401473 MAP1LC3B2A6NCE7 125 aa11.78□□□□□ -0.52
HMGA1-204ENST00000401473 KNCNA6PVL3 124 aa11.78□□□□□ -0.52
HMGA1-204ENST00000401473 RAB5CP51148 216 aa11.78□□□□□ -0.52
HMGA1-204ENST00000401473 CMC4P56277 68 aaPredicted RBP11.78□□□□□ -0.52
HMGA1-204ENST00000401473 PSG3Q16557 428 aa11.78□□□□□ -0.52
HMGA1-204ENST00000401473 DEFB121Q5J5C9 76 aa11.78□□□□□ -0.52
HMGA1-204ENST00000401473 SAMD13Q5VXD3 122 aa11.78□□□□□ -0.52
HMGA1-204ENST00000401473 MRAPQ8TCY5 172 aa11.78□□□□□ -0.52
HMGA1-204ENST00000401473 MAP1LC3BQ9GZQ8 125 aa11.78□□□□□ -0.52
HMGA1-204ENST00000401473 M0R3E3 92 aa11.78□□□□□ -0.52
HMGA1-204ENST00000401473 H2AFB1P0C5Y9 115 aa11.78□□□□□ -0.52
HMGA1-204ENST00000401473 TEX261Q6UWH6 196 aa11.78□□□□□ -0.52
HMGA1-204ENST00000401473 SRD5A3Q9H8P0 318 aa11.78□□□□□ -0.52
HMGA1-204ENST00000401473 DNAH9Q9NYC9 4486 aa11.77□□□□□ -0.52
HMGA1-204ENST00000401473 A0A1B0GV50 99 aa11.77□□□□□ -0.53
HMGA1-204ENST00000401473 RBMY1BA6NDE4 496 aaKnown RBP11.77□□□□□ -0.53
HMGA1-204ENST00000401473 RBMY1EA6NEQ0 496 aaKnown RBP11.77□□□□□ -0.53
HMGA1-204ENST00000401473 RBMY1DP0C7P1 496 aaKnown RBP11.77□□□□□ -0.53
HMGA1-204ENST00000401473 ICAM4Q14773 271 aa11.77□□□□□ -0.53
HMGA1-204ENST00000401473 A8MZ25 164 aa11.76□□□□□ -0.53
HMGA1-204ENST00000401473 PRAC2D3DTV9 90 aa11.76□□□□□ -0.53
HMGA1-204ENST00000401473 ZNF705DP0CH99 300 aaPredicted RBP11.76□□□□□ -0.53
HMGA1-204ENST00000401473 ZNF705BP0CI00 300 aaPredicted RBP11.76□□□□□ -0.53
HMGA1-204ENST00000401473 CCL20P78556 96 aa11.76□□□□□ -0.53
HMGA1-204ENST00000401473 ACTL10Q5JWF8 245 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms