RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 CRXO43186 299 aaPredicted RBP12.85□□□□□ -0.35
NKX3-1-201ENST00000380871 LDLRAD2Q5SZI1 272 aa12.85□□□□□ -0.35
NKX3-1-201ENST00000380871 TEX45Q8NA69 505 aa12.85□□□□□ -0.35
NKX3-1-201ENST00000380871 SMIM12Q96EX1 92 aa12.85□□□□□ -0.35
NKX3-1-201ENST00000380871 RAB1BQ9H0U4 201 aa12.85□□□□□ -0.35
NKX3-1-201ENST00000380871 CT83Q5H943 113 aa12.85□□□□□ -0.35
NKX3-1-201ENST00000380871 SRSF12Q8WXF0 261 aaKnown RBP12.85□□□□□ -0.35
NKX3-1-201ENST00000380871 LOC105371242A0A075B767 164 aa12.84□□□□□ -0.35
NKX3-1-201ENST00000380871 NPIPB6E9PJ23 425 aa12.84□□□□□ -0.35
NKX3-1-201ENST00000380871 UBE2V1Q13404 147 aa12.84□□□□□ -0.35
NKX3-1-201ENST00000380871 C8orf31Q8N9H6 132 aa12.84□□□□□ -0.35
NKX3-1-201ENST00000380871 MAP1AP78559 2803 aaPredicted RBP12.84□□□□□ -0.35
NKX3-1-201ENST00000380871 IGKV1-17P01599 117 aa12.84□□□□□ -0.35
NKX3-1-201ENST00000380871 NUDT3O95989 172 aa12.84□□□□□ -0.35
NKX3-1-201ENST00000380871 HTR1DP28221 377 aa12.84□□□□□ -0.35
NKX3-1-201ENST00000380871 CHCHD1Q96BP2 118 aaKnown RBP12.84□□□□□ -0.35
NKX3-1-201ENST00000380871 OTORQ9NRC9 128 aa12.84□□□□□ -0.35
NKX3-1-201ENST00000380871 M0R3E3 92 aa12.83□□□□□ -0.36
NKX3-1-201ENST00000380871 SNAI2O43623 268 aa12.83□□□□□ -0.36
NKX3-1-201ENST00000380871 TIMD4Q96H15 378 aa12.83□□□□□ -0.36
NKX3-1-201ENST00000380871 UBTD1Q9HAC8 227 aa12.83□□□□□ -0.36
NKX3-1-201ENST00000380871 IGLV1-47P01700 117 aa12.83□□□□□ -0.36
NKX3-1-201ENST00000380871 FAM106CPP0CH98 169 aa12.83□□□□□ -0.36
NKX3-1-201ENST00000380871 PCP4P48539 62 aa12.83□□□□□ -0.36
NKX3-1-201ENST00000380871 FAM106AQ4KMX7 169 aa12.83□□□□□ -0.36
NKX3-1-201ENST00000380871 RASL11BQ9BPW5 248 aa12.83□□□□□ -0.36
NKX3-1-201ENST00000380871 CBY1Q9Y3M2 126 aa12.83□□□□□ -0.36
NKX3-1-201ENST00000380871 I3L2K1 104 aa12.82□□□□□ -0.36
NKX3-1-201ENST00000380871 UCNP55089 124 aa12.82□□□□□ -0.36
NKX3-1-201ENST00000380871 PLP1P60201 277 aa12.82□□□□□ -0.36
NKX3-1-201ENST00000380871 GFRA4Q9GZZ7 299 aa12.82□□□□□ -0.36
NKX3-1-201ENST00000380871 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.82□□□□□ -0.36
NKX3-1-201ENST00000380871 MUC21A0A0G2JKD1 596 aa12.82□□□□□ -0.36
NKX3-1-201ENST00000380871 MUC21A0A140T8X8 626 aa12.82□□□□□ -0.36
NKX3-1-201ENST00000380871 FBLN7Q53RD9 439 aa12.82□□□□□ -0.36
NKX3-1-201ENST00000380871 MUC21Q5SSG8 566 aa12.82□□□□□ -0.36
NKX3-1-201ENST00000380871 NDFIP1Q9BT67 221 aa12.82□□□□□ -0.36
NKX3-1-201ENST00000380871 PIEZO1Q92508 2521 aa12.82□□□□□ -0.36
NKX3-1-201ENST00000380871 NCR2O95944 276 aa12.82□□□□□ -0.36
NKX3-1-201ENST00000380871 LIPFP07098 398 aa12.82□□□□□ -0.36
NKX3-1-201ENST00000380871 TCTAP57738 103 aa12.82□□□□□ -0.36
NKX3-1-201ENST00000380871 ST20Q9HBF5 79 aa12.82□□□□□ -0.36
NKX3-1-201ENST00000380871 SOX21Q9Y651 276 aaPredicted RBP12.82□□□□□ -0.36
NKX3-1-201ENST00000380871 NCBP2LA6PVI3 153 aaKnown RBP12.81□□□□□ -0.36
NKX3-1-201ENST00000380871 CRIP1P50238 77 aa12.81□□□□□ -0.36
NKX3-1-201ENST00000380871 A0A087X0K7 114 aa12.81□□□□□ -0.36
NKX3-1-201ENST00000380871 TMSB15BA0A087X1C1 80 aa12.81□□□□□ -0.36
NKX3-1-201ENST00000380871 HAX1O00165 279 aa12.81□□□□□ -0.36
NKX3-1-201ENST00000380871 UQCRFS1P47985 274 aa12.81□□□□□ -0.36
NKX3-1-201ENST00000380871 NEU4Q8WWR8 484 aaPredicted RBP12.81□□□□□ -0.36
NKX3-1-201ENST00000380871 A0A1W2PPR1 153 aa12.8□□□□□ -0.36
NKX3-1-201ENST00000380871 FXYD7P58549 80 aa12.8□□□□□ -0.36
NKX3-1-201ENST00000380871 VAMP3Q15836 100 aa12.8□□□□□ -0.36
NKX3-1-201ENST00000380871 C8orf49Q96NF6 230 aa12.8□□□□□ -0.36
NKX3-1-201ENST00000380871 MAP1LC3CQ9BXW4 147 aa12.8□□□□□ -0.36
NKX3-1-201ENST00000380871 HRNRQ86YZ3 2850 aaPredicted RBP12.8□□□□□ -0.36
NKX3-1-201ENST00000380871 LOXL1Q08397 574 aaPredicted RBP12.8□□□□□ -0.36
NKX3-1-201ENST00000380871 A0A1B0GUT8 65 aa12.8□□□□□ -0.36
NKX3-1-201ENST00000380871 OR2T8A6NH00 312 aa12.8□□□□□ -0.36
NKX3-1-201ENST00000380871 BVES-AS1Q5T3Y7 98 aa12.8□□□□□ -0.36
NKX3-1-201ENST00000380871 SLC25A34Q6PIV7 304 aa12.8□□□□□ -0.36
NKX3-1-201ENST00000380871 TRBV19A0A075B6N1 114 aa12.79□□□□□ -0.36
NKX3-1-201ENST00000380871 IGHV3-23P01764 117 aa12.79□□□□□ -0.36
NKX3-1-201ENST00000380871 HOXB4P17483 251 aaPredicted RBP12.79□□□□□ -0.36
NKX3-1-201ENST00000380871 RBX1P62877 108 aa12.79□□□□□ -0.36
NKX3-1-201ENST00000380871 TMEM191AQ9H0A3 160 aa12.79□□□□□ -0.36
NKX3-1-201ENST00000380871 SCRT2Q9NQ03 307 aa12.79□□□□□ -0.36
NKX3-1-201ENST00000380871 CBY3A6NI87 242 aa12.79□□□□□ -0.36
NKX3-1-201ENST00000380871 K7EIM0 57 aa12.79□□□□□ -0.36
NKX3-1-201ENST00000380871 TAX1BP3O14907 124 aa12.79□□□□□ -0.36
NKX3-1-201ENST00000380871 SIGLEC15Q6ZMC9 328 aa12.79□□□□□ -0.36
NKX3-1-201ENST00000380871 IGHV2-70DA0A0C4DH43 119 aa12.79□□□□□ -0.36
NKX3-1-201ENST00000380871 LOC389332A0A1B0GUA5 103 aa12.79□□□□□ -0.36
NKX3-1-201ENST00000380871 C16orf54Q6UWD8 224 aa12.79□□□□□ -0.36
NKX3-1-201ENST00000380871 IL4P05112 153 aa12.78□□□□□ -0.36
NKX3-1-201ENST00000380871 FAM162BQ5T6X4 162 aa12.78□□□□□ -0.36
NKX3-1-201ENST00000380871 OR4C5Q8NGB2 326 aa12.78□□□□□ -0.36
NKX3-1-201ENST00000380871 C1RLQ9NZP8 487 aa12.78□□□□□ -0.36
NKX3-1-201ENST00000380871 TMEM14CQ9P0S9 112 aa12.78□□□□□ -0.36
NKX3-1-201ENST00000380871 PSG8Q9UQ74 426 aa12.78□□□□□ -0.36
NKX3-1-201ENST00000380871 ZFHX3Q15911 3703 aa12.78□□□□□ -0.36
NKX3-1-201ENST00000380871 IGHV3OR16-8A0A075B7F1 116 aa12.78□□□□□ -0.36
NKX3-1-201ENST00000380871 IGHV3-35A0A0C4DH35 117 aa12.78□□□□□ -0.36
NKX3-1-201ENST00000380871 HSBP1L1C9JCN9 74 aa12.77□□□□□ -0.36
NKX3-1-201ENST00000380871 HLA-DRB1P01911 266 aa12.77□□□□□ -0.36
NKX3-1-201ENST00000380871 OR5AL1P0C617 328 aa12.77□□□□□ -0.36
NKX3-1-201ENST00000380871 AP5S1Q9NUS5 200 aa12.77□□□□□ -0.36
NKX3-1-201ENST00000380871 DPM3Q9P2X0 92 aa12.77□□□□□ -0.36
NKX3-1-201ENST00000380871 RNF24Q9Y225 148 aa12.77□□□□□ -0.36
NKX3-1-201ENST00000380871 FAM231BA6NCW3 169 aa12.77□□□□□ -0.37
NKX3-1-201ENST00000380871 FCGR2BP31994 310 aaPredicted RBP12.77□□□□□ -0.37
NKX3-1-201ENST00000380871 SHANK2-AS3Q9BTD1 123 aa12.77□□□□□ -0.37
NKX3-1-201ENST00000380871 TMEM213A2RRL7 107 aa12.77□□□□□ -0.37
NKX3-1-201ENST00000380871 IFI27P40305 119 aaPredicted RBP12.77□□□□□ -0.37
NKX3-1-201ENST00000380871 BPIFA4PQ86YQ2 179 aa12.76□□□□□ -0.37
NKX3-1-201ENST00000380871 ZNF491Q8N8L2 437 aa12.76□□□□□ -0.37
NKX3-1-201ENST00000380871 SERTM2A0A1B0GWG4 89 aa12.76□□□□□ -0.37
NKX3-1-201ENST00000380871 SELENOKQ9Y6D0 94 aa12.76□□□□□ -0.37
NKX3-1-201ENST00000380871 H3BRN7 92 aa12.75□□□□□ -0.37
NKX3-1-201ENST00000380871 PSG3Q16557 428 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms