RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 TMEM89A2RUT3 159 aa10.57□□□□□ -0.72
PTPRF-202ENST00000372405 RPLP1P05386 114 aaKnown RBP10.57□□□□□ -0.72
PTPRF-202ENST00000372405 FOLR2P14207 255 aa10.57□□□□□ -0.72
PTPRF-202ENST00000372405 PDE6HQ13956 83 aa10.57□□□□□ -0.72
PTPRF-202ENST00000372405 LYPD1Q8N2G4 141 aa10.57□□□□□ -0.72
PTPRF-202ENST00000372405 TMEM86BQ8N661 226 aa10.57□□□□□ -0.72
PTPRF-202ENST00000372405 OR5B12Q96R08 314 aa10.57□□□□□ -0.72
PTPRF-202ENST00000372405 SERTAD4Q9NUC0 356 aa10.57□□□□□ -0.72
PTPRF-202ENST00000372405 DNAJC9-AS1A6NH13 148 aa10.57□□□□□ -0.72
PTPRF-202ENST00000372405 M0R3E3 92 aa10.57□□□□□ -0.72
PTPRF-202ENST00000372405 NDUFA4O00483 81 aa10.57□□□□□ -0.72
PTPRF-202ENST00000372405 GALR1P47211 349 aa10.57□□□□□ -0.72
PTPRF-202ENST00000372405 MYOZ3Q8TDC0 251 aa10.57□□□□□ -0.72
PTPRF-202ENST00000372405 METTL26Q96S19 204 aa10.57□□□□□ -0.72
PTPRF-202ENST00000372405 TRAV8-1A0A0A6YYK1 113 aa10.56□□□□□ -0.72
PTPRF-202ENST00000372405 GCGP01275 180 aa10.56□□□□□ -0.72
PTPRF-202ENST00000372405 IGLV2-11P01706 119 aa10.56□□□□□ -0.72
PTPRF-202ENST00000372405 FLI1Q01543 452 aaPredicted RBP10.56□□□□□ -0.72
PTPRF-202ENST00000372405 Q71RC1 249 aaPredicted RBP10.56□□□□□ -0.72
PTPRF-202ENST00000372405 GOLT1AQ6ZVE7 132 aa10.56□□□□□ -0.72
PTPRF-202ENST00000372405 BAGE2Q86Y30 109 aa10.56□□□□□ -0.72
PTPRF-202ENST00000372405 OR10G8Q8NGN5 311 aa10.56□□□□□ -0.72
PTPRF-202ENST00000372405 RNASE7Q9H1E1 156 aaKnown RBP10.56□□□□□ -0.72
PTPRF-202ENST00000372405 PEF1Q9UBV8 284 aaKnown RBP10.56□□□□□ -0.72
PTPRF-202ENST00000372405 TRBV24-1A0A075B6N3 115 aa10.55□□□□□ -0.72
PTPRF-202ENST00000372405 FAM181BA6NEQ2 426 aa10.55□□□□□ -0.72
PTPRF-202ENST00000372405 S100A7P31151 101 aa10.55□□□□□ -0.72
PTPRF-202ENST00000372405 FOXE3Q13461 319 aa10.55□□□□□ -0.72
PTPRF-202ENST00000372405 FAM209BQ5JX69 171 aa10.55□□□□□ -0.72
PTPRF-202ENST00000372405 C1orf194Q5T5A4 169 aa10.55□□□□□ -0.72
PTPRF-202ENST00000372405 IGFL4Q6B9Z1 124 aa10.55□□□□□ -0.72
PTPRF-202ENST00000372405 TMEM190Q8WZ59 177 aa10.55□□□□□ -0.72
PTPRF-202ENST00000372405 PYGO2Q9BRQ0 406 aa10.55□□□□□ -0.72
PTPRF-202ENST00000372405 MLST8Q9BVC4 326 aa10.55□□□□□ -0.72
PTPRF-202ENST00000372405 A0A087X0K7 114 aa10.54□□□□□ -0.72
PTPRF-202ENST00000372405 PPP1R2P9O14990 202 aa10.54□□□□□ -0.72
PTPRF-202ENST00000372405 GGCTO75223 188 aaKnown RBP10.54□□□□□ -0.72
PTPRF-202ENST00000372405 LTAP01374 205 aa10.54□□□□□ -0.72
PTPRF-202ENST00000372405 MGST1P10620 155 aaKnown RBP10.54□□□□□ -0.72
PTPRF-202ENST00000372405 HLA-DMBP28068 263 aa10.54□□□□□ -0.72
PTPRF-202ENST00000372405 UBE2G1P62253 170 aa10.54□□□□□ -0.72
PTPRF-202ENST00000372405 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.54□□□□□ -0.72
PTPRF-202ENST00000372405 RNF152Q8N8N0 203 aa10.54□□□□□ -0.72
PTPRF-202ENST00000372405 CMTM2Q8TAZ6 248 aa10.54□□□□□ -0.72
PTPRF-202ENST00000372405 FMC1Q96HJ9 113 aa10.54□□□□□ -0.72
PTPRF-202ENST00000372405 V9GYV3 84 aa10.54□□□□□ -0.72
PTPRF-202ENST00000372405 DIRC3C9JPN6 131 aa10.54□□□□□ -0.72
PTPRF-202ENST00000372405 ZNF253O75346 499 aa10.54□□□□□ -0.72
PTPRF-202ENST00000372405 ELANEP08246 267 aa10.54□□□□□ -0.72
PTPRF-202ENST00000372405 FAM3BP58499 235 aaPredicted RBP10.54□□□□□ -0.72
PTPRF-202ENST00000372405 ERVFC1-1P60608 527 aa10.54□□□□□ -0.72
PTPRF-202ENST00000372405 SLC35B1P78383 322 aa10.54□□□□□ -0.72
PTPRF-202ENST00000372405 C1QL4Q86Z23 238 aa10.54□□□□□ -0.72
PTPRF-202ENST00000372405 GLMPQ8WWB7 406 aa10.54□□□□□ -0.72
PTPRF-202ENST00000372405 FAM210BQ96KR6 192 aa10.54□□□□□ -0.72
PTPRF-202ENST00000372405 GPR82Q96P67 336 aa10.54□□□□□ -0.72
PTPRF-202ENST00000372405 ZNF331Q9NQX6 463 aaPredicted RBP10.54□□□□□ -0.72
PTPRF-202ENST00000372405 ZNF320A2RRD8 509 aa10.53□□□□□ -0.72
PTPRF-202ENST00000372405 PSG9Q00887 426 aa10.53□□□□□ -0.72
PTPRF-202ENST00000372405 C16orf54Q6UWD8 224 aa10.53□□□□□ -0.72
PTPRF-202ENST00000372405 Q6ZSV7 163 aa10.53□□□□□ -0.72
PTPRF-202ENST00000372405 Q86TA4 180 aa10.53□□□□□ -0.72
PTPRF-202ENST00000372405 ZFP82Q8N141 532 aa10.53□□□□□ -0.72
PTPRF-202ENST00000372405 AAMDCQ9H7C9 122 aa10.53□□□□□ -0.72
PTPRF-202ENST00000372405 S100A9P06702 114 aaKnown RBP10.52□□□□□ -0.72
PTPRF-202ENST00000372405 EDN2P20800 178 aa10.52□□□□□ -0.72
PTPRF-202ENST00000372405 RPS10P46783 165 aaKnown RBP10.52□□□□□ -0.72
PTPRF-202ENST00000372405 ASCL2Q99929 193 aa10.52□□□□□ -0.72
PTPRF-202ENST00000372405 OSTCQ9NRP0 149 aa10.52□□□□□ -0.72
PTPRF-202ENST00000372405 A0A1W2PPQ1 181 aa10.52□□□□□ -0.73
PTPRF-202ENST00000372405 ZNF785A8K8V0 405 aa10.52□□□□□ -0.73
PTPRF-202ENST00000372405 TM4SF20Q53R12 229 aa10.52□□□□□ -0.73
PTPRF-202ENST00000372405 LINC00322Q6ZN03 302 aaPredicted RBP10.52□□□□□ -0.73
PTPRF-202ENST00000372405 TMEM75Q8N9X5 138 aa10.52□□□□□ -0.73
PTPRF-202ENST00000372405 IMMP2LQ96T52 175 aa10.52□□□□□ -0.73
PTPRF-202ENST00000372405 TMEM160Q9NX00 188 aa10.52□□□□□ -0.73
PTPRF-202ENST00000372405 MLXQ9UH92 298 aa10.52□□□□□ -0.73
PTPRF-202ENST00000372405 HIVEP2P31629 2446 aa10.51□□□□□ -0.73
PTPRF-202ENST00000372405 TRBV6-1A0A0K0K1D8 114 aa10.51□□□□□ -0.73
PTPRF-202ENST00000372405 LY6G6DO95868 133 aa10.51□□□□□ -0.73
PTPRF-202ENST00000372405 S100PP25815 95 aa10.51□□□□□ -0.73
PTPRF-202ENST00000372405 FOXL1Q12952 345 aa10.51□□□□□ -0.73
PTPRF-202ENST00000372405 TCTEX1D4Q5JR98 221 aa10.51□□□□□ -0.73
PTPRF-202ENST00000372405 IBA57Q5T440 356 aaKnown RBP10.51□□□□□ -0.73
PTPRF-202ENST00000372405 KLHDC1Q8N7A1 406 aa10.51□□□□□ -0.73
PTPRF-202ENST00000372405 SMIM12Q96EX1 92 aa10.51□□□□□ -0.73
PTPRF-202ENST00000372405 UBE2E2Q96LR5 201 aa10.51□□□□□ -0.73
PTPRF-202ENST00000372405 TRAV8-2A0A0B4J237 113 aa10.5□□□□□ -0.73
PTPRF-202ENST00000372405 ZNF705FA8MVS1 300 aaPredicted RBP10.5□□□□□ -0.73
PTPRF-202ENST00000372405 LGALS1P09382 135 aaKnown RBP10.5□□□□□ -0.73
PTPRF-202ENST00000372405 PSG3Q16557 428 aa10.5□□□□□ -0.73
PTPRF-202ENST00000372405 C18orf65Q6ZTR6 163 aa10.5□□□□□ -0.73
PTPRF-202ENST00000372405 PRNTQ86SH4 94 aa10.5□□□□□ -0.73
PTPRF-202ENST00000372405 GPHB5Q86YW7 130 aa10.5□□□□□ -0.73
PTPRF-202ENST00000372405 RNF182Q8N6D2 247 aa10.5□□□□□ -0.73
PTPRF-202ENST00000372405 IL36BQ9NZH7 164 aa10.5□□□□□ -0.73
PTPRF-202ENST00000372405 IGKV2-40A0A087WW87 121 aaPredicted RBP10.5□□□□□ -0.73
PTPRF-202ENST00000372405 C1orf196B1AJZ1 125 aa10.5□□□□□ -0.73
PTPRF-202ENST00000372405 IGKV2D-40P01614 121 aaPredicted RBP10.5□□□□□ -0.73
PTPRF-202ENST00000372405 PRR27Q6MZM9 219 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms