RNA–Protein interactions for RNA: ENST00000344626.8

SMARCA4-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best) BASIC

Gene SMARCA4, Length 5,392 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-201ENST00000344626 A0A0G2JRQ6 117 aa13.12□□□□□ -0.31
SMARCA4-201ENST00000344626 MUC21A0A140T8X8 626 aa13.12□□□□□ -0.31
SMARCA4-201ENST00000344626 NDUFA4O00483 81 aa13.12□□□□□ -0.31
SMARCA4-201ENST00000344626 IGKV2D-40P01614 121 aaPredicted RBP13.12□□□□□ -0.31
SMARCA4-201ENST00000344626 HIGD1CA8MV81 97 aa13.12□□□□□ -0.31
SMARCA4-201ENST00000344626 LRRC75A-AS1Q8N1F1 130 aa13.12□□□□□ -0.31
SMARCA4-201ENST00000344626 MED12LQ86YW9 2145 aa13.12□□□□□ -0.31
SMARCA4-201ENST00000344626 TSSC4Q9Y5U2 329 aaPredicted RBP13.12□□□□□ -0.31
SMARCA4-201ENST00000344626 DOCK11Q5JSL3 2073 aa13.12□□□□□ -0.31
SMARCA4-201ENST00000344626 NMUP48645 174 aa13.12□□□□□ -0.31
SMARCA4-201ENST00000344626 HSPB9Q9BQS6 159 aa13.12□□□□□ -0.31
SMARCA4-201ENST00000344626 CENPVL3A0A0U1RRI6 287 aa13.12□□□□□ -0.31
SMARCA4-201ENST00000344626 Q6ZRM9 215 aa13.12□□□□□ -0.31
SMARCA4-201ENST00000344626 PDE6HQ13956 83 aa13.11□□□□□ -0.31
SMARCA4-201ENST00000344626 EXOC3-AS1Q8N2X6 119 aa13.11□□□□□ -0.31
SMARCA4-201ENST00000344626 SRRM4A7MD48 611 aaKnown RBP13.11□□□□□ -0.31
SMARCA4-201ENST00000344626 DIAPH2-AS1Q14236 149 aa13.11□□□□□ -0.31
SMARCA4-201ENST00000344626 VSIRQ9H7M9 311 aa13.11□□□□□ -0.31
SMARCA4-201ENST00000344626 SPATA31B1PQ5VZV4 182 aa13.11□□□□□ -0.31
SMARCA4-201ENST00000344626 SEPSECSQ9HD40 501 aaKnown RBP13.11□□□□□ -0.31
SMARCA4-201ENST00000344626 ATP5LO75964 103 aa13.11□□□□□ -0.31
SMARCA4-201ENST00000344626 FOLR2P14207 255 aa13.11□□□□□ -0.31
SMARCA4-201ENST00000344626 FXYD7P58549 80 aa13.11□□□□□ -0.31
SMARCA4-201ENST00000344626 DEFB131AP59861 70 aa13.11□□□□□ -0.31
SMARCA4-201ENST00000344626 PMCHL1Q16048 86 aa13.11□□□□□ -0.31
SMARCA4-201ENST00000344626 PSG3Q16557 428 aa13.11□□□□□ -0.31
SMARCA4-201ENST00000344626 C1orf194Q5T5A4 169 aa13.11□□□□□ -0.31
SMARCA4-201ENST00000344626 TCRAP04437 139 aa13.1□□□□□ -0.31
SMARCA4-201ENST00000344626 ZNF134P52741 427 aa13.1□□□□□ -0.31
SMARCA4-201ENST00000344626 BBC3Q96PG8 261 aaPredicted RBP13.1□□□□□ -0.31
SMARCA4-201ENST00000344626 CARHSP1Q9Y2V2 147 aaKnown RBP13.1□□□□□ -0.31
SMARCA4-201ENST00000344626 PCNTO95613 3336 aa13.1□□□□□ -0.31
SMARCA4-201ENST00000344626 C2CD3Q4AC94 2353 aa13.1□□□□□ -0.31
SMARCA4-201ENST00000344626 TRAV1-1A0A0B4J248 108 aa13.1□□□□□ -0.31
SMARCA4-201ENST00000344626 H3BRM9 83 aa13.1□□□□□ -0.31
SMARCA4-201ENST00000344626 RPL23P62829 140 aaKnown RBP13.1□□□□□ -0.31
SMARCA4-201ENST00000344626 MEIG1Q5JSS6 88 aa13.1□□□□□ -0.31
SMARCA4-201ENST00000344626 TNRC6AQ8NDV7 1962 aaKnown RBP13.1□□□□□ -0.31
SMARCA4-201ENST00000344626 CBLN1P23435 193 aa13.1□□□□□ -0.31
SMARCA4-201ENST00000344626 LOXL1Q08397 574 aaPredicted RBP13.1□□□□□ -0.31
SMARCA4-201ENST00000344626 Q6ZSR3 168 aa13.1□□□□□ -0.31
SMARCA4-201ENST00000344626 OR4C5Q8NGB2 326 aa13.1□□□□□ -0.31
SMARCA4-201ENST00000344626 ZNF256Q9Y2P7 627 aaPredicted RBP13.1□□□□□ -0.31
SMARCA4-201ENST00000344626 A0A087WWC5 75 aa13.09□□□□□ -0.31
SMARCA4-201ENST00000344626 PPBPP02775 128 aa13.09□□□□□ -0.31
SMARCA4-201ENST00000344626 C22orf34Q6ZV56 151 aa13.09□□□□□ -0.31
SMARCA4-201ENST00000344626 IFITM2Q01629 132 aa13.09□□□□□ -0.31
SMARCA4-201ENST00000344626 SRSF4Q08170 494 aaKnown RBP13.09□□□□□ -0.31
SMARCA4-201ENST00000344626 RNASE7Q9H1E1 156 aaKnown RBP13.09□□□□□ -0.31
SMARCA4-201ENST00000344626 ZFP36P26651 326 aaKnown RBP13.09□□□□□ -0.31
SMARCA4-201ENST00000344626 FOXA3P55318 350 aaPredicted RBP13.09□□□□□ -0.31
SMARCA4-201ENST00000344626 BLCAPP62952 87 aa13.09□□□□□ -0.31
SMARCA4-201ENST00000344626 SCGB3A1Q96QR1 104 aa13.09□□□□□ -0.31
SMARCA4-201ENST00000344626 TMEM238LA0A1B0GVL6 79 aa13.08□□□□□ -0.31
SMARCA4-201ENST00000344626 A6NJY4 79 aa13.08□□□□□ -0.31
SMARCA4-201ENST00000344626 CRPP02741 224 aa13.08□□□□□ -0.31
SMARCA4-201ENST00000344626 MRPL27Q9P0M9 148 aaKnown RBP13.08□□□□□ -0.31
SMARCA4-201ENST00000344626 C5orf52A6NGY3 159 aa13.08□□□□□ -0.32
SMARCA4-201ENST00000344626 C10orf142B7Z368 130 aa13.08□□□□□ -0.32
SMARCA4-201ENST00000344626 OR9G4Q8NGQ1 327 aa13.08□□□□□ -0.32
SMARCA4-201ENST00000344626 TCTEX1D4Q5JR98 221 aa13.08□□□□□ -0.32
SMARCA4-201ENST00000344626 C1QL4Q86Z23 238 aa13.08□□□□□ -0.32
SMARCA4-201ENST00000344626 TTC9CQ8N5M4 171 aa13.08□□□□□ -0.32
SMARCA4-201ENST00000344626 JKAMPQ9P055 326 aa13.08□□□□□ -0.32
SMARCA4-201ENST00000344626 TRAV12-3A0A0B4J271 114 aa13.08□□□□□ -0.32
SMARCA4-201ENST00000344626 A6NDN8 102 aa13.08□□□□□ -0.32
SMARCA4-201ENST00000344626 APOC4P55056 127 aa13.07□□□□□ -0.32
SMARCA4-201ENST00000344626 MLANAQ16655 118 aa13.07□□□□□ -0.32
SMARCA4-201ENST00000344626 AGMATQ9BSE5 352 aa13.07□□□□□ -0.32
SMARCA4-201ENST00000344626 TRGV1A0A0A0MS02 117 aa13.07□□□□□ -0.32
SMARCA4-201ENST00000344626 DEFB136Q30KP8 78 aa13.07□□□□□ -0.32
SMARCA4-201ENST00000344626 MST1LQ2TV78 715 aa13.07□□□□□ -0.32
SMARCA4-201ENST00000344626 APOHP02749 345 aaPredicted RBP13.07□□□□□ -0.32
SMARCA4-201ENST00000344626 POU2AF1Q16633 256 aa13.07□□□□□ -0.32
SMARCA4-201ENST00000344626 H3BVH4 76 aa13.06□□□□□ -0.32
SMARCA4-201ENST00000344626 RPP25LQ8N5L8 163 aaKnown RBP13.06□□□□□ -0.32
SMARCA4-201ENST00000344626 ZMAT4Q9H898 229 aa13.06□□□□□ -0.32
SMARCA4-201ENST00000344626 ZNF106Q9H2Y7 1883 aaKnown RBP13.06□□□□□ -0.32
SMARCA4-201ENST00000344626 COTL1Q14019 142 aa13.06□□□□□ -0.32
SMARCA4-201ENST00000344626 C8orf86Q6ZUL3 223 aa13.06□□□□□ -0.32
SMARCA4-201ENST00000344626 TSKUQ8WUA8 353 aa13.06□□□□□ -0.32
SMARCA4-201ENST00000344626 RAB37Q96AX2 223 aa13.06□□□□□ -0.32
SMARCA4-201ENST00000344626 VGLL1Q99990 258 aa13.06□□□□□ -0.32
SMARCA4-201ENST00000344626 DENND4AQ7Z401 1863 aa13.06□□□□□ -0.32
SMARCA4-201ENST00000344626 LYL1P12980 280 aa13.06□□□□□ -0.32
SMARCA4-201ENST00000344626 GUSBP1Q15486 140 aa13.06□□□□□ -0.32
SMARCA4-201ENST00000344626 CFAP161Q6P656 301 aa13.06□□□□□ -0.32
SMARCA4-201ENST00000344626 CCL24O00175 119 aa13.05□□□□□ -0.32
SMARCA4-201ENST00000344626 MSMPQ1L6U9 139 aa13.05□□□□□ -0.32
SMARCA4-201ENST00000344626 OCC1Q8TAD7 63 aa13.05□□□□□ -0.32
SMARCA4-201ENST00000344626 DEFB130BP0DP73 79 aa13.05□□□□□ -0.32
SMARCA4-201ENST00000344626 DEFB130AP0DP74 79 aa13.05□□□□□ -0.32
SMARCA4-201ENST00000344626 IFI27P40305 119 aaPredicted RBP13.05□□□□□ -0.32
SMARCA4-201ENST00000344626 NCOA6Q14686 2063 aaPredicted RBP13.05□□□□□ -0.32
SMARCA4-201ENST00000344626 BCL6BQ8N143 479 aaPredicted RBP13.05□□□□□ -0.32
SMARCA4-201ENST00000344626 PPIFP30405 207 aaKnown RBP13.05□□□□□ -0.32
SMARCA4-201ENST00000344626 CYTL1Q9NRR1 136 aa13.05□□□□□ -0.32
SMARCA4-201ENST00000344626 C7orf71A4D174 169 aa13.04□□□□□ -0.32
SMARCA4-201ENST00000344626 RPL36AP83881 106 aaKnown RBP13.04□□□□□ -0.32
SMARCA4-201ENST00000344626 RPL36ALQ969Q0 106 aaKnown RBP13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms