RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 VMA21Q3ZAQ7 101 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 RNASE13Q5GAN3 156 aaKnown RBP2.93□□□□□ -1.94
SYNE1-201ENST00000341594 NMSQ5H8A3 153 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 ZNF519Q8TB69 540 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 H0YJW9 148 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 MFAP2P55001 183 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 TMEM187Q14656 261 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 ZG16O60844 167 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 C5orf64Q2M2E5 130 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 GPR82Q96P67 336 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 RNASE7Q9H1E1 156 aaKnown RBP2.93□□□□□ -1.94
SYNE1-201ENST00000341594 HELZ2Q9BYK8 2649 aaKnown RBP2.93□□□□□ -1.94
SYNE1-201ENST00000341594 E9PLN8 166 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 BCE1O60756 84 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 FGFRL1Q8N441 504 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 NCR2O95944 276 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 ZNF503Q96F45 646 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 TMEM243Q9BU79 118 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 TIMP3P35625 211 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 NANOS2P60321 138 aaKnown RBP2.93□□□□□ -1.94
SYNE1-201ENST00000341594 LOC107986453A0A1B0GWG9 222 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 SMIM27A0A1W2PRY6 76 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 C15orf62A8K5M9 175 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 FABP5P3A8MUU1 101 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 HIST1H4AP62805 103 aaKnown RBP2.93□□□□□ -1.94
SYNE1-201ENST00000341594 ZNF319Q9P2F9 582 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 C10orf128Q5T292 105 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 OR4F17Q8NGA8 305 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 CNRIP1Q96F85 164 aaPredicted RBP2.93□□□□□ -1.94
SYNE1-201ENST00000341594 WFDC11Q8NEX6 87 aa2.93□□□□□ -1.94
SYNE1-201ENST00000341594 CCL5P13501 91 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 CCL13Q99616 98 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 PROK2Q9HC23 129 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 TNFRSF18Q9Y5U5 241 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 CACNG7P62955 275 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 MRPS36P82909 103 aaKnown RBP2.92□□□□□ -1.94
SYNE1-201ENST00000341594 GAPTQ8N292 157 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 Q96M66 194 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 ZFAND5O76080 213 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 ZGLP1P0C6A0 271 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 GFERP55789 205 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 TMEM42Q69YG0 159 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 COX7A2P2O60397 106 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 FOXF1Q12946 379 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 EIF4EBP1Q13541 118 aaPredicted RBP2.92□□□□□ -1.94
SYNE1-201ENST00000341594 MRPL14Q6P1L8 145 aaKnown RBP2.92□□□□□ -1.94
SYNE1-201ENST00000341594 IZUMO1RA6ND01 250 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 FOXF2Q12947 444 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 PGPA6NDG6 321 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 ZNF645Q8N7E2 425 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 CLEC1BQ9P126 229 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 TRAV41A0A0B4J266 112 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 TDGF1P13385 188 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 CCL17Q92583 94 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 SPAARA0A1B0GVQ0 90 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 RPL8P62917 257 aaKnown RBP2.92□□□□□ -1.94
SYNE1-201ENST00000341594 KIR3DS1Q14943 382 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 JMJD8Q96S16 334 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 TM2D2Q9BX73 214 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 CHD6Q8TD26 2715 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 ASCL5Q7RTU5 278 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 MLST8Q9BVC4 326 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 PRDM14Q9GZV8 571 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 INAFM2P0DMQ5 153 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 PRR30Q53SZ7 412 aaPredicted RBP2.92□□□□□ -1.94
SYNE1-201ENST00000341594 SYT8Q8NBV8 401 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 CENPVL3A0A0U1RRI6 287 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 hCG_38984A0A1B0GV85 526 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 PRSS29PA6NIE9 313 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 MOSP00540 346 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 THAP10Q9P2Z0 257 aaPredicted RBP2.92□□□□□ -1.94
SYNE1-201ENST00000341594 PRADC1Q9BSG0 188 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 CXCL12P48061 93 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 LY6EQ16553 131 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 C15orf53Q8NAA6 179 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 H3BMM0 161 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 C8orf31Q8N9H6 132 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 AAMDCQ9H7C9 122 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 SELPP16109 830 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 CCL4P13236 92 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 TMEM50BP56557 158 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 RPL32P62910 135 aaKnown RBP2.92□□□□□ -1.94
SYNE1-201ENST00000341594 CSRP2Q16527 193 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 TEX45Q8NA69 505 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 TMEM230Q96A57 120 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 ID1P41134 155 aa2.92□□□□□ -1.94
SYNE1-201ENST00000341594 FASNP49327 2511 aaKnown RBP2.92□□□□□ -1.94
SYNE1-201ENST00000341594 AMN1Q8IY45 258 aa2.91□□□□□ -1.94
SYNE1-201ENST00000341594 VGLL1Q99990 258 aa2.91□□□□□ -1.94
SYNE1-201ENST00000341594 OVOL2Q9BRP0 275 aa2.91□□□□□ -1.94
SYNE1-201ENST00000341594 C9orf118A6NHY6 69 aa2.91□□□□□ -1.94
SYNE1-201ENST00000341594 LILRA5A6NI73 299 aa2.91□□□□□ -1.94
SYNE1-201ENST00000341594 FSTL3O95633 263 aa2.91□□□□□ -1.94
SYNE1-201ENST00000341594 IL3RAP26951 378 aa2.91□□□□□ -1.94
SYNE1-201ENST00000341594 SRIP30626 198 aa2.91□□□□□ -1.94
SYNE1-201ENST00000341594 SPRNQ5BIV9 151 aa2.91□□□□□ -1.94
SYNE1-201ENST00000341594 C4orf48Q5BLP8 95 aa2.91□□□□□ -1.94
SYNE1-201ENST00000341594 RPRMLQ8N4K4 120 aa2.91□□□□□ -1.94
SYNE1-201ENST00000341594 LINC01560Q8TB33 94 aa2.91□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms