RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 ABHD17AQ96GS6 310 aa7.13□□□□□ -1.27
RTN3-202ENST00000339997 DUX3Q96PT4 197 aa7.13□□□□□ -1.27
RTN3-202ENST00000339997 ST20Q9HBF5 79 aa7.13□□□□□ -1.27
RTN3-202ENST00000339997 C15orf62A8K5M9 175 aa7.13□□□□□ -1.27
RTN3-202ENST00000339997 SYS1-DBNDD2H3BUS1 97 aa7.13□□□□□ -1.27
RTN3-202ENST00000339997 RHOGP84095 191 aa7.12□□□□□ -1.27
RTN3-202ENST00000339997 ETDBQ3ZM63 59 aa7.12□□□□□ -1.27
RTN3-202ENST00000339997 CD177Q8N6Q3 437 aa7.12□□□□□ -1.27
RTN3-202ENST00000339997 KLRD1Q13241 179 aa7.12□□□□□ -1.27
RTN3-202ENST00000339997 Q6ZWC4 215 aa7.12□□□□□ -1.27
RTN3-202ENST00000339997 SPRR3Q9UBC9 169 aa7.12□□□□□ -1.27
RTN3-202ENST00000339997 GFRA3O60609 400 aa7.12□□□□□ -1.27
RTN3-202ENST00000339997 PFN1P07737 140 aaKnown RBP7.12□□□□□ -1.27
RTN3-202ENST00000339997 ZC2HC1AQ96GY0 325 aa7.12□□□□□ -1.27
RTN3-202ENST00000339997 OTORQ9NRC9 128 aa7.12□□□□□ -1.27
RTN3-202ENST00000339997 DMXL1Q9Y485 3027 aa7.12□□□□□ -1.27
RTN3-202ENST00000339997 ATP5L2Q7Z4Y8 100 aa7.12□□□□□ -1.27
RTN3-202ENST00000339997 GGNQ86UU5 652 aa7.12□□□□□ -1.27
RTN3-202ENST00000339997 ZNF48Q96MX3 618 aaPredicted RBP7.12□□□□□ -1.27
RTN3-202ENST00000339997 LINC00312Q9Y6C7 94 aa7.12□□□□□ -1.27
RTN3-202ENST00000339997 COX11Q9Y6N1 276 aa7.12□□□□□ -1.27
RTN3-202ENST00000339997 ZNF462Q96JM2 2506 aa7.12□□□□□ -1.27
RTN3-202ENST00000339997 IGHV1-18A0A0C4DH31 117 aa7.11□□□□□ -1.27
RTN3-202ENST00000339997 FAM231BA6NCW3 169 aa7.11□□□□□ -1.27
RTN3-202ENST00000339997 SMAD7O15105 426 aaKnown RBP7.11□□□□□ -1.27
RTN3-202ENST00000339997 ARMS2P0C7Q2 107 aa7.11□□□□□ -1.27
RTN3-202ENST00000339997 CSRP2Q16527 193 aa7.11□□□□□ -1.27
RTN3-202ENST00000339997 C14orf178Q8N769 122 aaPredicted RBP7.11□□□□□ -1.27
RTN3-202ENST00000339997 CHTOPQ9Y3Y2 248 aaKnown RBP7.11□□□□□ -1.27
RTN3-202ENST00000339997 ANKHD1Q8IWZ3 2542 aaKnown RBP7.11□□□□□ -1.27
RTN3-202ENST00000339997 TRAV1-1A0A0B4J248 108 aa7.11□□□□□ -1.27
RTN3-202ENST00000339997 IL18BPO95998 194 aa7.11□□□□□ -1.27
RTN3-202ENST00000339997 LINC00271P0C7V0 271 aa7.11□□□□□ -1.27
RTN3-202ENST00000339997 PSMG4Q5JS54 123 aa7.11□□□□□ -1.27
RTN3-202ENST00000339997 OR4X2Q8NGF9 303 aa7.11□□□□□ -1.27
RTN3-202ENST00000339997 LINC01587Q99440 93 aa7.11□□□□□ -1.27
RTN3-202ENST00000339997 A8MWV9 139 aa7.11□□□□□ -1.27
RTN3-202ENST00000339997 APOBEC3AP31941 199 aaPredicted RBP7.11□□□□□ -1.27
RTN3-202ENST00000339997 ZNF726P1Q15940 193 aa7.11□□□□□ -1.27
RTN3-202ENST00000339997 VWC2Q2TAL6 325 aa7.11□□□□□ -1.27
RTN3-202ENST00000339997 SLC25A39Q9BZJ4 359 aaPredicted RBP7.11□□□□□ -1.27
RTN3-202ENST00000339997 SCN4AP35499 1836 aa7.11□□□□□ -1.27
RTN3-202ENST00000339997 TRAV9-1A0A075B6T8 112 aa7.11□□□□□ -1.27
RTN3-202ENST00000339997 TMEM213A2RRL7 107 aa7.11□□□□□ -1.27
RTN3-202ENST00000339997 HOXD3P31249 432 aaPredicted RBP7.11□□□□□ -1.27
RTN3-202ENST00000339997 CFHR2P36980 270 aa7.11□□□□□ -1.27
RTN3-202ENST00000339997 HSD52Q0P140 79 aa7.11□□□□□ -1.27
RTN3-202ENST00000339997 TDRG1Q3Y452 100 aa7.11□□□□□ -1.27
RTN3-202ENST00000339997 ANAPC1Q9H1A4 1944 aa7.1□□□□□ -1.27
RTN3-202ENST00000339997 NBR2O15453 112 aa7.1□□□□□ -1.27
RTN3-202ENST00000339997 SRSF1Q07955 248 aaKnown RBP eCLIP7.1□□□□□ -1.272e-7■■□□□ 13.4
RTN3-202ENST00000339997 GAGE2BQ13066 116 aa7.1□□□□□ -1.27
RTN3-202ENST00000339997 GAGE2EQ4V326 116 aa7.1□□□□□ -1.27
RTN3-202ENST00000339997 AMTNQ6UX39 209 aa7.1□□□□□ -1.27
RTN3-202ENST00000339997 GAGE2DQ9UEU5 116 aa7.1□□□□□ -1.27
RTN3-202ENST00000339997 TMEM8BA6NDV4 472 aa7.1□□□□□ -1.27
RTN3-202ENST00000339997 CLPSP04118 112 aa7.1□□□□□ -1.27
RTN3-202ENST00000339997 TMEM158Q8WZ71 300 aa7.1□□□□□ -1.27
RTN3-202ENST00000339997 LINC00477Q96M19 166 aa7.1□□□□□ -1.27
RTN3-202ENST00000339997 TMEM133Q9H2Q1 129 aa7.1□□□□□ -1.27
RTN3-202ENST00000339997 IGLV3-12A0A075B6K2 115 aa7.1□□□□□ -1.27
RTN3-202ENST00000339997 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.1□□□□□ -1.27
RTN3-202ENST00000339997 IGHV1-46P01743 117 aa7.1□□□□□ -1.27
RTN3-202ENST00000339997 SLAQ13239 276 aa7.1□□□□□ -1.27
RTN3-202ENST00000339997 ANXA2RQ3ZCQ2 193 aa7.1□□□□□ -1.27
RTN3-202ENST00000339997 SUMO4Q6EEV6 95 aa7.1□□□□□ -1.27
RTN3-202ENST00000339997 ADAMTSL5Q6ZMM2 481 aa7.1□□□□□ -1.27
RTN3-202ENST00000339997 TRAV40A0A0B4J280 105 aa7.1□□□□□ -1.27
RTN3-202ENST00000339997 B9A039 149 aa7.1□□□□□ -1.27
RTN3-202ENST00000339997 INS-IGF2F8WCM5 200 aa7.1□□□□□ -1.27
RTN3-202ENST00000339997 INSP01308 110 aa7.1□□□□□ -1.27
RTN3-202ENST00000339997 IGLL1P15814 213 aa7.1□□□□□ -1.27
RTN3-202ENST00000339997 CEACAM8P31997 349 aaPredicted RBP7.1□□□□□ -1.27
RTN3-202ENST00000339997 SEC11AP67812 179 aa7.1□□□□□ -1.27
RTN3-202ENST00000339997 CRIPAKQ8N1N5 446 aa7.1□□□□□ -1.27
RTN3-202ENST00000339997 C7orf69Q9H7B7 122 aa7.1□□□□□ -1.27
RTN3-202ENST00000339997 CSMD1Q96PZ7 3565 aa7.09□□□□□ -1.27
RTN3-202ENST00000339997 A0A087WWL8 130 aa7.09□□□□□ -1.27
RTN3-202ENST00000339997 VWC2LB2RUY7 222 aa7.09□□□□□ -1.27
RTN3-202ENST00000339997 IGHV2-5P01817 119 aa7.09□□□□□ -1.27
RTN3-202ENST00000339997 PAX9P55771 341 aa7.09□□□□□ -1.27
RTN3-202ENST00000339997 LAMTOR3Q9UHA4 124 aa7.09□□□□□ -1.27
RTN3-202ENST00000339997 WIPF3A6NGB9 483 aa7.09□□□□□ -1.27
RTN3-202ENST00000339997 PLNP26678 52 aa7.09□□□□□ -1.27
RTN3-202ENST00000339997 C15orf32Q32M92 178 aa7.09□□□□□ -1.27
RTN3-202ENST00000339997 ZNF329Q86UD4 541 aa7.09□□□□□ -1.27
RTN3-202ENST00000339997 RCHY1Q96PM5 261 aa7.09□□□□□ -1.27
RTN3-202ENST00000339997 SP9P0CG40 484 aa7.09□□□□□ -1.27
RTN3-202ENST00000339997 ATP5IP56385 69 aaPredicted RBP7.09□□□□□ -1.27
RTN3-202ENST00000339997 ERCC8Q13216 396 aa7.09□□□□□ -1.27
RTN3-202ENST00000339997 C8orf46Q8TAG6 207 aa7.09□□□□□ -1.27
RTN3-202ENST00000339997 C18orf32Q8TCD1 76 aa7.09□□□□□ -1.27
RTN3-202ENST00000339997 NLRC5Q86WI3 1866 aa7.09□□□□□ -1.28
RTN3-202ENST00000339997 K7EMI3 77 aa7.09□□□□□ -1.28
RTN3-202ENST00000339997 TM4SF5O14894 197 aa7.09□□□□□ -1.28
RTN3-202ENST00000339997 SPRY2O43597 315 aa7.09□□□□□ -1.28
RTN3-202ENST00000339997 IGHV3-53P01767 116 aa7.09□□□□□ -1.28
RTN3-202ENST00000339997 PLA2G5P39877 138 aa7.09□□□□□ -1.28
RTN3-202ENST00000339997 DUX4L9Q6RFH8 374 aaPredicted RBP7.09□□□□□ -1.28
RTN3-202ENST00000339997 TCF20Q9UGU0 1960 aaKnown RBP7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 161.3 ms