RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 IGFL4Q6B9Z1 124 aa7.99□□□□□ -1.13
USP54-201ENST00000339859 ZNF502Q8TBZ5 544 aa7.99□□□□□ -1.13
USP54-201ENST00000339859 IGFBPL1Q8WX77 278 aa7.99□□□□□ -1.13
USP54-201ENST00000339859 TTC28Q96AY4 2481 aa7.99□□□□□ -1.13
USP54-201ENST00000339859 C7orf71A4D174 169 aa7.99□□□□□ -1.13
USP54-201ENST00000339859 SH2D1AO60880 128 aa7.99□□□□□ -1.13
USP54-201ENST00000339859 RPL36AP83881 106 aaKnown RBP7.99□□□□□ -1.13
USP54-201ENST00000339859 RPL36ALQ969Q0 106 aaKnown RBP7.99□□□□□ -1.13
USP54-201ENST00000339859 CBLN2Q8IUK8 224 aa7.99□□□□□ -1.13
USP54-201ENST00000339859 MUC21A0A0G2JKD1 596 aa7.99□□□□□ -1.13
USP54-201ENST00000339859 MUC21A0A140T8X8 626 aa7.99□□□□□ -1.13
USP54-201ENST00000339859 MALP21145 153 aa7.99□□□□□ -1.13
USP54-201ENST00000339859 BBC3Q96PG8 261 aaPredicted RBP7.99□□□□□ -1.13
USP54-201ENST00000339859 TRAV25A0A0B4J276 109 aa7.99□□□□□ -1.13
USP54-201ENST00000339859 H3BRM9 83 aa7.99□□□□□ -1.13
USP54-201ENST00000339859 IGLC1P0CG04 106 aa7.99□□□□□ -1.13
USP54-201ENST00000339859 COTL1Q14019 142 aa7.99□□□□□ -1.13
USP54-201ENST00000339859 RITA1Q96K30 269 aa7.99□□□□□ -1.13
USP54-201ENST00000339859 CITED2Q99967 270 aaPredicted RBP7.99□□□□□ -1.13
USP54-201ENST00000339859 HIGD1CA8MV81 97 aa7.98□□□□□ -1.13
USP54-201ENST00000339859 OR2K2Q8NGT1 345 aa7.98□□□□□ -1.13
USP54-201ENST00000339859 LINC00574Q9H8X3 128 aa7.98□□□□□ -1.13
USP54-201ENST00000339859 IGHV4OR15-8A0A075B7B6 117 aa7.98□□□□□ -1.13
USP54-201ENST00000339859 A0A087WW49 117 aa7.98□□□□□ -1.13
USP54-201ENST00000339859 WIPF3A6NGB9 483 aa7.98□□□□□ -1.13
USP54-201ENST00000339859 SLC17A3O00476 420 aa7.98□□□□□ -1.13
USP54-201ENST00000339859 IGLV2-23P01705 113 aa7.98□□□□□ -1.13
USP54-201ENST00000339859 PKIAP61925 76 aa7.98□□□□□ -1.13
USP54-201ENST00000339859 ERCC8Q13216 396 aa7.98□□□□□ -1.13
USP54-201ENST00000339859 ORMDL3Q8N138 153 aa7.98□□□□□ -1.13
USP54-201ENST00000339859 RNF182Q8N6D2 247 aa7.98□□□□□ -1.13
USP54-201ENST00000339859 SLC25A2Q9BXI2 301 aa7.98□□□□□ -1.13
USP54-201ENST00000339859 ZNF256Q9Y2P7 627 aaPredicted RBP7.98□□□□□ -1.13
USP54-201ENST00000339859 IGLV11-55A0A075B6I3 123 aa7.98□□□□□ -1.13
USP54-201ENST00000339859 LOC102724200A0A096LPH7 203 aaPredicted RBP7.98□□□□□ -1.13
USP54-201ENST00000339859 KNCNA6PVL3 124 aa7.98□□□□□ -1.13
USP54-201ENST00000339859 RNASE1P07998 156 aaKnown RBP7.98□□□□□ -1.13
USP54-201ENST00000339859 CFAP161Q6P656 301 aa7.98□□□□□ -1.13
USP54-201ENST00000339859 GVINP1Q7Z2Y8 2422 aa7.98□□□□□ -1.13
USP54-201ENST00000339859 SRIP30626 198 aa7.98□□□□□ -1.13
USP54-201ENST00000339859 SUMO2P61956 95 aaKnown RBP7.98□□□□□ -1.13
USP54-201ENST00000339859 TMEM136Q6ZRR5 245 aa7.98□□□□□ -1.13
USP54-201ENST00000339859 KLK15Q9H2R5 256 aa7.98□□□□□ -1.13
USP54-201ENST00000339859 DEFB130BP0DP73 79 aa7.97□□□□□ -1.13
USP54-201ENST00000339859 DEFB130AP0DP74 79 aa7.97□□□□□ -1.13
USP54-201ENST00000339859 LGALS3P17931 250 aaKnown RBP7.97□□□□□ -1.13
USP54-201ENST00000339859 CDKN1BP46527 198 aa7.97□□□□□ -1.13
USP54-201ENST00000339859 CHCHD5Q9BSY4 110 aa7.97□□□□□ -1.13
USP54-201ENST00000339859 CYTL1Q9NRR1 136 aa7.97□□□□□ -1.13
USP54-201ENST00000339859 TRBV19A0A075B6N1 114 aa7.97□□□□□ -1.13
USP54-201ENST00000339859 RNASE7Q9H1E1 156 aaKnown RBP7.97□□□□□ -1.13
USP54-201ENST00000339859 ADAMTS20P59510 1910 aa7.97□□□□□ -1.13
USP54-201ENST00000339859 TRAV8-6A0A0B4J262 113 aa7.97□□□□□ -1.13
USP54-201ENST00000339859 M0R3E3 92 aa7.97□□□□□ -1.13
USP54-201ENST00000339859 CIRBPQ14011 172 aaKnown RBP7.97□□□□□ -1.13
USP54-201ENST00000339859 SPINK13Q1W4C9 94 aa7.97□□□□□ -1.13
USP54-201ENST00000339859 FAM90A2PQ658T7 463 aa7.97□□□□□ -1.13
USP54-201ENST00000339859 ODF3L1Q8IXM7 274 aa7.97□□□□□ -1.13
USP54-201ENST00000339859 Q8TAT8 98 aa7.97□□□□□ -1.13
USP54-201ENST00000339859 TGIF2-C20orf24A0A0A6YYL0 155 aa7.97□□□□□ -1.13
USP54-201ENST00000339859 DIRC3C9JPN6 131 aa7.97□□□□□ -1.13
USP54-201ENST00000339859 CRXO43186 299 aaPredicted RBP7.97□□□□□ -1.13
USP54-201ENST00000339859 PSCAO43653 123 aa7.97□□□□□ -1.13
USP54-201ENST00000339859 IGHV3-53P01767 116 aa7.97□□□□□ -1.13
USP54-201ENST00000339859 PPBPP02775 128 aa7.97□□□□□ -1.13
USP54-201ENST00000339859 SMIM12Q96EX1 92 aa7.97□□□□□ -1.13
USP54-201ENST00000339859 DOCK10Q96BY6 2186 aa7.97□□□□□ -1.13
USP54-201ENST00000339859 TSKUQ8WUA8 353 aa7.97□□□□□ -1.13
USP54-201ENST00000339859 F5H768 121 aa7.96□□□□□ -1.13
USP54-201ENST00000339859 RPL23P62829 140 aaKnown RBP7.96□□□□□ -1.13
USP54-201ENST00000339859 LYPD6Q86Y78 171 aa7.96□□□□□ -1.13
USP54-201ENST00000339859 CD28P10747 220 aa7.96□□□□□ -1.13
USP54-201ENST00000339859 PPIFP30405 207 aaKnown RBP7.96□□□□□ -1.13
USP54-201ENST00000339859 ZNF491Q8N8L2 437 aa7.96□□□□□ -1.13
USP54-201ENST00000339859 TMEM70Q9BUB7 260 aa7.96□□□□□ -1.13
USP54-201ENST00000339859 ADARB2-AS1A8MUL3 147 aa7.96□□□□□ -1.14
USP54-201ENST00000339859 Q86TA4 180 aa7.96□□□□□ -1.14
USP54-201ENST00000339859 MS4A6AQ9H2W1 248 aa7.96□□□□□ -1.14
USP54-201ENST00000339859 MRPL53Q96EL3 112 aaKnown RBP7.96□□□□□ -1.14
USP54-201ENST00000339859 A0A1B0GW64 132 aa7.96□□□□□ -1.14
USP54-201ENST00000339859 CRYGCP07315 174 aa7.96□□□□□ -1.14
USP54-201ENST00000339859 IFI27P40305 119 aaPredicted RBP7.96□□□□□ -1.14
USP54-201ENST00000339859 HNRNPA3P51991 378 aaKnown RBP7.96□□□□□ -1.14
USP54-201ENST00000339859 TMEM256Q8N2U0 113 aa7.96□□□□□ -1.14
USP54-201ENST00000339859 RPP25LQ8N5L8 163 aaKnown RBP7.96□□□□□ -1.14
USP54-201ENST00000339859 OR10D4PQ8NGN7 298 aa7.96□□□□□ -1.14
USP54-201ENST00000339859 SCGB3A1Q96QR1 104 aa7.96□□□□□ -1.14
USP54-201ENST00000339859 DOCK7Q96N67 2140 aa7.95□□□□□ -1.14
USP54-201ENST00000339859 IGHV1OR15-1A0A075B7D0 117 aa7.95□□□□□ -1.14
USP54-201ENST00000339859 A0A087WX48 190 aa7.95□□□□□ -1.14
USP54-201ENST00000339859 ATP5LO75964 103 aa7.95□□□□□ -1.14
USP54-201ENST00000339859 ATP5L2Q7Z4Y8 100 aa7.95□□□□□ -1.14
USP54-201ENST00000339859 LY96Q9Y6Y9 160 aa7.95□□□□□ -1.14
USP54-201ENST00000339859 I3L2K1 104 aa7.95□□□□□ -1.14
USP54-201ENST00000339859 K7EMT4 169 aa7.95□□□□□ -1.14
USP54-201ENST00000339859 LEPROTL1O95214 131 aa7.95□□□□□ -1.14
USP54-201ENST00000339859 SCGB1C2P0DMR2 95 aa7.95□□□□□ -1.14
USP54-201ENST00000339859 CBLN1P23435 193 aa7.95□□□□□ -1.14
USP54-201ENST00000339859 NUDT10Q8NFP7 164 aa7.95□□□□□ -1.14
USP54-201ENST00000339859 NUDT11Q96G61 164 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms