RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 PARLQ9H300 379 aa11.35□□□□□ -0.59
CCDC88C-202ENST00000334448 CLEC5AQ9NY25 188 aa11.35□□□□□ -0.59
CCDC88C-202ENST00000334448 SETD2Q9BYW2 2564 aaPredicted RBP11.34□□□□□ -0.59
CCDC88C-202ENST00000334448 HELTA6NFD8 242 aa11.34□□□□□ -0.59
CCDC88C-202ENST00000334448 ADARB2-AS1A8MUL3 147 aa11.34□□□□□ -0.59
CCDC88C-202ENST00000334448 SLC17A3O00476 420 aa11.34□□□□□ -0.59
CCDC88C-202ENST00000334448 APOC3P02656 99 aa11.34□□□□□ -0.59
CCDC88C-202ENST00000334448 SYNJ2BPP57105 145 aa11.34□□□□□ -0.59
CCDC88C-202ENST00000334448 RANP62826 216 aaKnown RBP11.34□□□□□ -0.59
CCDC88C-202ENST00000334448 FOXL1Q12952 345 aa11.34□□□□□ -0.59
CCDC88C-202ENST00000334448 GUCA2BQ16661 112 aa11.34□□□□□ -0.59
CCDC88C-202ENST00000334448 TM4SF20Q53R12 229 aa11.34□□□□□ -0.59
CCDC88C-202ENST00000334448 KHDC1LQ5JSQ8 128 aa11.34□□□□□ -0.59
CCDC88C-202ENST00000334448 SAMD13Q5VXD3 122 aa11.34□□□□□ -0.59
CCDC88C-202ENST00000334448 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.34□□□□□ -0.59
CCDC88C-202ENST00000334448 OR11H1Q8NG94 326 aa11.34□□□□□ -0.59
CCDC88C-202ENST00000334448 DPF1Q92782 380 aa11.34□□□□□ -0.59
CCDC88C-202ENST00000334448 RAX2Q96IS3 184 aa11.34□□□□□ -0.59
CCDC88C-202ENST00000334448 SMIM7Q9BQ49 75 aa11.34□□□□□ -0.59
CCDC88C-202ENST00000334448 SLC50A1Q9BRV3 221 aa11.34□□□□□ -0.59
CCDC88C-202ENST00000334448 NIPSNAP3BQ9BS92 247 aa11.34□□□□□ -0.59
CCDC88C-202ENST00000334448 ZNF331Q9NQX6 463 aaPredicted RBP11.34□□□□□ -0.59
CCDC88C-202ENST00000334448 EPDR1Q9UM22 224 aa11.34□□□□□ -0.59
CCDC88C-202ENST00000334448 PGPA6NDG6 321 aa11.33□□□□□ -0.6
CCDC88C-202ENST00000334448 ZNF727A8MUV8 499 aa11.33□□□□□ -0.6
CCDC88C-202ENST00000334448 C9JCJ5 164 aa11.33□□□□□ -0.6
CCDC88C-202ENST00000334448 PEX7O00628 323 aa11.33□□□□□ -0.6
CCDC88C-202ENST00000334448 PNRC1Q12796 327 aaPredicted RBP11.33□□□□□ -0.6
CCDC88C-202ENST00000334448 DEFB136Q30KP8 78 aa11.33□□□□□ -0.6
CCDC88C-202ENST00000334448 C8orf86Q6ZUL3 223 aa11.33□□□□□ -0.6
CCDC88C-202ENST00000334448 NDUFA11Q86Y39 141 aa11.33□□□□□ -0.6
CCDC88C-202ENST00000334448 MRPL53Q96EL3 112 aaKnown RBP11.33□□□□□ -0.6
CCDC88C-202ENST00000334448 ATG101Q9BSB4 218 aa11.33□□□□□ -0.6
CCDC88C-202ENST00000334448 KLF12Q9Y4X4 402 aa11.33□□□□□ -0.6
CCDC88C-202ENST00000334448 LY96Q9Y6Y9 160 aa11.33□□□□□ -0.6
CCDC88C-202ENST00000334448 NIPBLQ6KC79 2804 aaeCLIP11.32□□□□□ -0.6
CCDC88C-202ENST00000334448 TRBV6-1A0A0K0K1D8 114 aa11.32□□□□□ -0.6
CCDC88C-202ENST00000334448 SERTM2A0A1B0GWG4 89 aa11.32□□□□□ -0.6
CCDC88C-202ENST00000334448 C2orf70A6NJV1 201 aa11.32□□□□□ -0.6
CCDC88C-202ENST00000334448 SNAPINO95295 136 aa11.32□□□□□ -0.6
CCDC88C-202ENST00000334448 TAS2R60P59551 318 aa11.32□□□□□ -0.6
CCDC88C-202ENST00000334448 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.32□□□□□ -0.6
CCDC88C-202ENST00000334448 AAMDCQ9H7C9 122 aa11.32□□□□□ -0.6
CCDC88C-202ENST00000334448 PEMTQ9UBM1 199 aa11.32□□□□□ -0.6
CCDC88C-202ENST00000334448 NAT8Q9UHE5 227 aa11.32□□□□□ -0.6
CCDC88C-202ENST00000334448 PRELID1Q9Y255 219 aa11.32□□□□□ -0.6
CCDC88C-202ENST00000334448 JMJD1CQ15652 2540 aa11.31□□□□□ -0.6
CCDC88C-202ENST00000334448 IGHV3OR16-13A0A075B7E8 117 aa11.31□□□□□ -0.6
CCDC88C-202ENST00000334448 IGHV3-49A0A0A0MS15 119 aa11.31□□□□□ -0.6
CCDC88C-202ENST00000334448 IGHV3-74A0A0B4J1X5 117 aa11.31□□□□□ -0.6
CCDC88C-202ENST00000334448 IGHV3-66A0A0C4DH42 116 aa11.31□□□□□ -0.6
CCDC88C-202ENST00000334448 ZNF785A8K8V0 405 aa11.31□□□□□ -0.6
CCDC88C-202ENST00000334448 H3BTX0 84 aa11.31□□□□□ -0.6
CCDC88C-202ENST00000334448 HAX1O00165 279 aa11.31□□□□□ -0.6
CCDC88C-202ENST00000334448 CCL24O00175 119 aa11.31□□□□□ -0.6
CCDC88C-202ENST00000334448 SOCS3O14543 225 aa11.31□□□□□ -0.6
CCDC88C-202ENST00000334448 TCRAP04437 139 aa11.31□□□□□ -0.6
CCDC88C-202ENST00000334448 SLC25A5P05141 298 aaKnown RBP11.31□□□□□ -0.6
CCDC88C-202ENST00000334448 S100A9P06702 114 aaKnown RBP11.31□□□□□ -0.6
CCDC88C-202ENST00000334448 SLURP1P55000 103 aa11.31□□□□□ -0.6
CCDC88C-202ENST00000334448 KRTAP10-3P60369 221 aa11.31□□□□□ -0.6
CCDC88C-202ENST00000334448 SRSF2Q01130 221 aaKnown RBP11.31□□□□□ -0.6
CCDC88C-202ENST00000334448 CLRN3Q8NCR9 226 aa11.31□□□□□ -0.6
CCDC88C-202ENST00000334448 OR9G4Q8NGQ1 327 aa11.31□□□□□ -0.6
CCDC88C-202ENST00000334448 TVP23CQ96ET8 276 aa11.31□□□□□ -0.6
CCDC88C-202ENST00000334448 DERL1Q9BUN8 251 aa11.31□□□□□ -0.6
CCDC88C-202ENST00000334448 SDF2L1Q9HCN8 221 aa11.31□□□□□ -0.6
CCDC88C-202ENST00000334448 SIGLEC8Q9NYZ4 499 aa11.31□□□□□ -0.6
CCDC88C-202ENST00000334448 TRBV20OR9-2A0A075B6H5 130 aa11.3□□□□□ -0.6
CCDC88C-202ENST00000334448 SNRPCP09234 159 aaKnown RBP11.3□□□□□ -0.6
CCDC88C-202ENST00000334448 CBLN1P23435 193 aa11.3□□□□□ -0.6
CCDC88C-202ENST00000334448 AKR1C3P42330 323 aa11.3□□□□□ -0.6
CCDC88C-202ENST00000334448 RPL35P42766 123 aaKnown RBP11.3□□□□□ -0.6
CCDC88C-202ENST00000334448 CNN1P51911 297 aaKnown RBP11.3□□□□□ -0.6
CCDC88C-202ENST00000334448 CEBPGP53567 150 aa11.3□□□□□ -0.6
CCDC88C-202ENST00000334448 RHEBQ15382 184 aa11.3□□□□□ -0.6
CCDC88C-202ENST00000334448 TMEM241Q24JQ0 296 aa11.3□□□□□ -0.6
CCDC88C-202ENST00000334448 EXOC3-AS1Q8N2X6 119 aa11.3□□□□□ -0.6
CCDC88C-202ENST00000334448 CMTM2Q8TAZ6 248 aa11.3□□□□□ -0.6
CCDC88C-202ENST00000334448 SMIM12Q96EX1 92 aa11.3□□□□□ -0.6
CCDC88C-202ENST00000334448 NRN1Q9NPD7 142 aa11.3□□□□□ -0.6
CCDC88C-202ENST00000334448 TRAV8-2A0A0B4J237 113 aa11.29□□□□□ -0.6
CCDC88C-202ENST00000334448 FBLL1A6NHQ2 334 aaKnown RBP11.29□□□□□ -0.6
CCDC88C-202ENST00000334448 B4DEV8 164 aa11.29□□□□□ -0.6
CCDC88C-202ENST00000334448 M0QZ24 198 aa11.29□□□□□ -0.6
CCDC88C-202ENST00000334448 FOLR2P14207 255 aa11.29□□□□□ -0.6
CCDC88C-202ENST00000334448 TMEM183BQ1AE95 376 aa11.29□□□□□ -0.6
CCDC88C-202ENST00000334448 ADAMTSL5Q6ZMM2 481 aa11.29□□□□□ -0.6
CCDC88C-202ENST00000334448 C11orf44Q8N8P7 122 aa11.29□□□□□ -0.6
CCDC88C-202ENST00000334448 DLX4Q92988 240 aaPredicted RBP11.29□□□□□ -0.6
CCDC88C-202ENST00000334448 IGF2BP2-AS1Q96M15 143 aa11.29□□□□□ -0.6
CCDC88C-202ENST00000334448 TEP1Q99973 2627 aaKnown RBP11.29□□□□□ -0.6
CCDC88C-202ENST00000334448 ISLRO14498 428 aa11.28□□□□□ -0.6
CCDC88C-202ENST00000334448 ZNF674Q2M3X9 581 aa11.28□□□□□ -0.6
CCDC88C-202ENST00000334448 AWAT1Q58HT5 328 aa11.28□□□□□ -0.6
CCDC88C-202ENST00000334448 TCF24Q7RTU0 167 aa11.28□□□□□ -0.6
CCDC88C-202ENST00000334448 TMEM75Q8N9X5 138 aa11.28□□□□□ -0.6
CCDC88C-202ENST00000334448 FMC1Q96HJ9 113 aa11.28□□□□□ -0.6
CCDC88C-202ENST00000334448 MLXQ9UH92 298 aa11.28□□□□□ -0.6
CCDC88C-202ENST00000334448 TRAV2A0A0B4J234 112 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms