RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 SOX21Q9Y651 276 aaPredicted RBP10.73□□□□□ -0.69
CCDC88C-201ENST00000331194 AGRNO00468 2067 aa10.72□□□□□ -0.69
CCDC88C-201ENST00000331194 TMEM213A2RRL7 107 aa10.72□□□□□ -0.69
CCDC88C-201ENST00000331194 CT83Q5H943 113 aa10.72□□□□□ -0.69
CCDC88C-201ENST00000331194 Q86TA4 180 aa10.72□□□□□ -0.69
CCDC88C-201ENST00000331194 C17orf77Q96MU5 243 aa10.72□□□□□ -0.69
CCDC88C-201ENST00000331194 ZNF492Q9P255 531 aa10.72□□□□□ -0.69
CCDC88C-201ENST00000331194 PKDREJQ9NTG1 2253 aa10.72□□□□□ -0.69
CCDC88C-201ENST00000331194 IGKV2D-26A0A0A0MRZ7 120 aa10.72□□□□□ -0.69
CCDC88C-201ENST00000331194 IGLV2-11P01706 119 aa10.72□□□□□ -0.69
CCDC88C-201ENST00000331194 SH2D6Q7Z4S9 175 aa10.72□□□□□ -0.69
CCDC88C-201ENST00000331194 BSNQ9UPA5 3926 aa10.72□□□□□ -0.69
CCDC88C-201ENST00000331194 AMN1Q8IY45 258 aa10.71□□□□□ -0.69
CCDC88C-201ENST00000331194 GFRA4Q9GZZ7 299 aa10.71□□□□□ -0.69
CCDC88C-201ENST00000331194 IGHV1-18A0A0C4DH31 117 aa10.71□□□□□ -0.69
CCDC88C-201ENST00000331194 NPIPB6E9PJ23 425 aa10.71□□□□□ -0.69
CCDC88C-201ENST00000331194 GP9P14770 177 aa10.71□□□□□ -0.69
CCDC88C-201ENST00000331194 CD300EQ496F6 205 aaPredicted RBP10.71□□□□□ -0.69
CCDC88C-201ENST00000331194 BCL6BQ8N143 479 aaPredicted RBP10.71□□□□□ -0.69
CCDC88C-201ENST00000331194 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.71□□□□□ -0.69
CCDC88C-201ENST00000331194 SSUH2Q9Y2M2 353 aa10.71□□□□□ -0.69
CCDC88C-201ENST00000331194 RAI1Q7Z5J4 1906 aaPredicted RBP10.71□□□□□ -0.7
CCDC88C-201ENST00000331194 SMIM17P0DL12 118 aa10.71□□□□□ -0.7
CCDC88C-201ENST00000331194 GATA3P23771 443 aa10.71□□□□□ -0.7
CCDC88C-201ENST00000331194 Q6ZT83 130 aa10.71□□□□□ -0.7
CCDC88C-201ENST00000331194 OR5A1Q8NGJ0 315 aa10.71□□□□□ -0.7
CCDC88C-201ENST00000331194 SMIM13P0DJ93 91 aa10.7□□□□□ -0.7
CCDC88C-201ENST00000331194 CRIP1P50238 77 aa10.7□□□□□ -0.7
CCDC88C-201ENST00000331194 SLC25A48Q6ZT89 311 aaKnown RBP10.7□□□□□ -0.7
CCDC88C-201ENST00000331194 IGHV3-72A0A0B4J1Y9 119 aa10.69□□□□□ -0.7
CCDC88C-201ENST00000331194 CCL3L1P16619 93 aa10.69□□□□□ -0.7
CCDC88C-201ENST00000331194 RPRMLQ8N4K4 120 aa10.69□□□□□ -0.7
CCDC88C-201ENST00000331194 A0A1W2PPI3 338 aa10.69□□□□□ -0.7
CCDC88C-201ENST00000331194 KLRC4-KLRK1H3BQV0 150 aa10.69□□□□□ -0.7
CCDC88C-201ENST00000331194 SLC25A17O43808 307 aa10.69□□□□□ -0.7
CCDC88C-201ENST00000331194 PLA2G2CQ5R387 149 aa10.69□□□□□ -0.7
CCDC88C-201ENST00000331194 AMTNQ6UX39 209 aa10.69□□□□□ -0.7
CCDC88C-201ENST00000331194 ZCCHC24Q8N2G6 241 aaKnown RBP10.69□□□□□ -0.7
CCDC88C-201ENST00000331194 ZNF414Q96IQ9 312 aa10.69□□□□□ -0.7
CCDC88C-201ENST00000331194 TLN1Q9Y490 2541 aaKnown RBP10.69□□□□□ -0.7
CCDC88C-201ENST00000331194 POLEQ07864 2286 aa10.69□□□□□ -0.7
CCDC88C-201ENST00000331194 FTH1P19P0C7X4 201 aa10.69□□□□□ -0.7
CCDC88C-201ENST00000331194 INSL3P51460 131 aa10.69□□□□□ -0.7
CCDC88C-201ENST00000331194 PRB3Q04118 309 aaPredicted RBP10.69□□□□□ -0.7
CCDC88C-201ENST00000331194 THAP8Q8NA92 274 aa10.69□□□□□ -0.7
CCDC88C-201ENST00000331194 LYZP61626 148 aa10.68□□□□□ -0.7
CCDC88C-201ENST00000331194 ATP5G2Q06055 141 aa10.68□□□□□ -0.7
CCDC88C-201ENST00000331194 RIGQ13278 110 aa10.68□□□□□ -0.7
CCDC88C-201ENST00000331194 OR9G4Q8NGQ1 327 aa10.68□□□□□ -0.7
CCDC88C-201ENST00000331194 NHP2Q9NX24 153 aaKnown RBP10.68□□□□□ -0.7
CCDC88C-201ENST00000331194 KIR2DL2P43627 348 aaPredicted RBP10.68□□□□□ -0.7
CCDC88C-201ENST00000331194 LGALS9BQ3B8N2 356 aa10.68□□□□□ -0.7
CCDC88C-201ENST00000331194 ETDBQ3ZM63 59 aa10.68□□□□□ -0.7
CCDC88C-201ENST00000331194 LGALS9CQ6DKI2 356 aa10.68□□□□□ -0.7
CCDC88C-201ENST00000331194 ARPC1AQ92747 370 aa10.68□□□□□ -0.7
CCDC88C-201ENST00000331194 PRELID3AQ96N28 172 aa10.68□□□□□ -0.7
CCDC88C-201ENST00000331194 RPUSD1Q9UJJ7 312 aaKnown RBP10.68□□□□□ -0.7
CCDC88C-201ENST00000331194 C16orf97H3BN30 126 aa10.67□□□□□ -0.7
CCDC88C-201ENST00000331194 GAS8-AS1O95177 125 aa10.67□□□□□ -0.7
CCDC88C-201ENST00000331194 TNFRSF1AP19438 455 aa10.67□□□□□ -0.7
CCDC88C-201ENST00000331194 OR4X2Q8NGF9 303 aa10.67□□□□□ -0.7
CCDC88C-201ENST00000331194 IFI27L1Q96BM0 104 aa10.67□□□□□ -0.7
CCDC88C-201ENST00000331194 C8orf49Q96NF6 230 aa10.67□□□□□ -0.7
CCDC88C-201ENST00000331194 SVEP1Q4LDE5 3571 aa10.67□□□□□ -0.7
CCDC88C-201ENST00000331194 LHBP01229 141 aa10.67□□□□□ -0.7
CCDC88C-201ENST00000331194 MBNL2Q5VZF2 373 aaKnown RBP10.67□□□□□ -0.7
CCDC88C-201ENST00000331194 MRAP2Q96G30 205 aa10.67□□□□□ -0.7
CCDC88C-201ENST00000331194 VGLL1Q99990 258 aa10.67□□□□□ -0.7
CCDC88C-201ENST00000331194 H3BMG7 143 aa10.67□□□□□ -0.7
CCDC88C-201ENST00000331194 M0R3E3 92 aa10.67□□□□□ -0.7
CCDC88C-201ENST00000331194 NDUFS7O75251 213 aa10.67□□□□□ -0.7
CCDC88C-201ENST00000331194 ATP5IP56385 69 aaPredicted RBP10.67□□□□□ -0.7
CCDC88C-201ENST00000331194 LYZL1Q6UWQ5 148 aa10.67□□□□□ -0.7
CCDC88C-201ENST00000331194 C9orf106Q8NAJ2 232 aa10.67□□□□□ -0.7
CCDC88C-201ENST00000331194 MDS2Q8NDY4 140 aa10.67□□□□□ -0.7
CCDC88C-201ENST00000331194 GAFA1Q96PS6 74 aa10.67□□□□□ -0.7
CCDC88C-201ENST00000331194 DLX1P56177 255 aa10.66□□□□□ -0.7
CCDC88C-201ENST00000331194 TMEM164Q5U3C3 297 aa10.66□□□□□ -0.7
CCDC88C-201ENST00000331194 LCNL1Q6ZST4 164 aa10.66□□□□□ -0.7
CCDC88C-201ENST00000331194 OSR1Q8TAX0 266 aaPredicted RBP10.66□□□□□ -0.7
CCDC88C-201ENST00000331194 SPAG8Q99932 426 aaPredicted RBP10.66□□□□□ -0.7
CCDC88C-201ENST00000331194 NPYP01303 97 aa10.65□□□□□ -0.7
CCDC88C-201ENST00000331194 DPF1Q92782 380 aa10.65□□□□□ -0.7
CCDC88C-201ENST00000331194 ZNF479Q96JC4 524 aa10.65□□□□□ -0.7
CCDC88C-201ENST00000331194 SPANXB1Q9NS25 103 aaPredicted RBP10.65□□□□□ -0.7
CCDC88C-201ENST00000331194 ENSAO43768 121 aaKnown RBP10.65□□□□□ -0.7
CCDC88C-201ENST00000331194 SUB1P53999 127 aaKnown RBP eCLIP10.65□□□□□ -0.7
CCDC88C-201ENST00000331194 GTSCR1Q86UQ5 136 aa10.65□□□□□ -0.7
CCDC88C-201ENST00000331194 COL25A1Q9BXS0 654 aaPredicted RBP10.65□□□□□ -0.7
CCDC88C-201ENST00000331194 HBDP02042 147 aa10.64□□□□□ -0.71
CCDC88C-201ENST00000331194 CNTFRP26992 372 aa10.64□□□□□ -0.71
CCDC88C-201ENST00000331194 PPIFP30405 207 aaKnown RBP10.64□□□□□ -0.71
CCDC88C-201ENST00000331194 C5orf64Q2M2E5 130 aa10.64□□□□□ -0.71
CCDC88C-201ENST00000331194 MRPL51Q4U2R6 128 aaKnown RBP10.64□□□□□ -0.71
CCDC88C-201ENST00000331194 TCTEX1D4Q5JR98 221 aa10.64□□□□□ -0.71
CCDC88C-201ENST00000331194 ZNF833PQ6ZTB9 187 aa10.64□□□□□ -0.71
CCDC88C-201ENST00000331194 WI2-2373I1.2A0A1W2PRP0 233 aa10.64□□□□□ -0.71
CCDC88C-201ENST00000331194 M0R1B8 84 aa10.64□□□□□ -0.71
CCDC88C-201ENST00000331194 IGLV2-23P01705 113 aa10.64□□□□□ -0.71
CCDC88C-201ENST00000331194 TMEM167AQ8TBQ9 72 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms