RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 LYPD1Q8N2G4 141 aa9.37□□□□□ -0.91
VPS39-201ENST00000318006 ZNF492Q9P255 531 aa9.37□□□□□ -0.91
VPS39-201ENST00000318006 ZNF407Q9C0G0 2248 aa9.37□□□□□ -0.91
VPS39-201ENST00000318006 Q86TA4 180 aa9.37□□□□□ -0.91
VPS39-201ENST00000318006 V9GYV3 84 aa9.37□□□□□ -0.91
VPS39-201ENST00000318006 PRB3Q04118 309 aaPredicted RBP9.36□□□□□ -0.91
VPS39-201ENST00000318006 Q6ZS92 163 aa9.36□□□□□ -0.91
VPS39-201ENST00000318006 DIDO1Q9BTC0 2240 aaKnown RBP9.36□□□□□ -0.91
VPS39-201ENST00000318006 HIST1H4AP62805 103 aaKnown RBP9.36□□□□□ -0.91
VPS39-201ENST00000318006 CD177Q8N6Q3 437 aa9.36□□□□□ -0.91
VPS39-201ENST00000318006 TMEM167AQ8TBQ9 72 aa9.36□□□□□ -0.91
VPS39-201ENST00000318006 CYYR1Q96J86 154 aa9.36□□□□□ -0.91
VPS39-201ENST00000318006 HEATR1Q9H583 2144 aaKnown RBP9.36□□□□□ -0.91
VPS39-201ENST00000318006 PLXNA2O75051 1894 aa9.36□□□□□ -0.91
VPS39-201ENST00000318006 Q6P435 159 aa9.36□□□□□ -0.91
VPS39-201ENST00000318006 HEATR5AQ86XA9 2040 aa9.36□□□□□ -0.91
VPS39-201ENST00000318006 SMKR1H3BMG3 65 aa9.36□□□□□ -0.91
VPS39-201ENST00000318006 THBDP07204 575 aa9.36□□□□□ -0.91
VPS39-201ENST00000318006 ARMS2P0C7Q2 107 aa9.36□□□□□ -0.91
VPS39-201ENST00000318006 TRAV40A0A0B4J280 105 aa9.35□□□□□ -0.91
VPS39-201ENST00000318006 A0A0U1RRA0 63 aa9.35□□□□□ -0.91
VPS39-201ENST00000318006 OVOL1O14753 267 aa9.35□□□□□ -0.91
VPS39-201ENST00000318006 WISP1O95388 367 aa9.35□□□□□ -0.91
VPS39-201ENST00000318006 IGLC7A0M8Q6 106 aa9.35□□□□□ -0.91
VPS39-201ENST00000318006 CCL25O15444 150 aa9.35□□□□□ -0.91
VPS39-201ENST00000318006 SLC25A20O43772 301 aa9.35□□□□□ -0.91
VPS39-201ENST00000318006 S100A7L2Q5SY68 101 aa9.35□□□□□ -0.91
VPS39-201ENST00000318006 CENPVQ7Z7K6 275 aaPredicted RBP9.35□□□□□ -0.91
VPS39-201ENST00000318006 GLMPQ8WWB7 406 aa9.35□□□□□ -0.91
VPS39-201ENST00000318006 C7orf69Q9H7B7 122 aa9.35□□□□□ -0.91
VPS39-201ENST00000318006 IGHV1-24A0A0C4DH33 117 aa9.35□□□□□ -0.91
VPS39-201ENST00000318006 VDAC2P45880 294 aaPredicted RBP9.35□□□□□ -0.91
VPS39-201ENST00000318006 ZNF524Q96C55 264 aa9.35□□□□□ -0.91
VPS39-201ENST00000318006 METRNQ9UJH8 293 aa9.35□□□□□ -0.91
VPS39-201ENST00000318006 LRRK1Q38SD2 2015 aa9.35□□□□□ -0.91
VPS39-201ENST00000318006 PRB4P10163 310 aaPredicted RBP9.35□□□□□ -0.91
VPS39-201ENST00000318006 CEACAM8P31997 349 aaPredicted RBP9.35□□□□□ -0.91
VPS39-201ENST00000318006 IL15RAQ13261 267 aa9.35□□□□□ -0.91
VPS39-201ENST00000318006 LGALS9BQ3B8N2 356 aa9.35□□□□□ -0.91
VPS39-201ENST00000318006 LGALS9CQ6DKI2 356 aa9.35□□□□□ -0.91
VPS39-201ENST00000318006 FAM231DQ6ZW35 169 aa9.35□□□□□ -0.91
VPS39-201ENST00000318006 C1orf147Q96MC9 270 aaPredicted RBP9.35□□□□□ -0.91
VPS39-201ENST00000318006 DPH3P1Q9H4G8 78 aa9.35□□□□□ -0.91
VPS39-201ENST00000318006 FER1L5A0AVI2 2057 aa9.35□□□□□ -0.91
VPS39-201ENST00000318006 KIAA2026Q5HYC2 2103 aa9.34□□□□□ -0.91
VPS39-201ENST00000318006 MBNL3Q9NUK0 354 aaKnown RBP9.34□□□□□ -0.91
VPS39-201ENST00000318006 TRAV8-3A0A0A6YYJ7 113 aa9.34□□□□□ -0.91
VPS39-201ENST00000318006 IGHV2-70DA0A0C4DH43 119 aa9.34□□□□□ -0.91
VPS39-201ENST00000318006 TMEM8BA6NDV4 472 aa9.34□□□□□ -0.91
VPS39-201ENST00000318006 LCNL1Q6ZST4 164 aa9.34□□□□□ -0.91
VPS39-201ENST00000318006 PROK2Q9HC23 129 aa9.34□□□□□ -0.91
VPS39-201ENST00000318006 LY6DQ14210 128 aa9.34□□□□□ -0.91
VPS39-201ENST00000318006 ZNF672Q499Z4 452 aaPredicted RBP9.34□□□□□ -0.91
VPS39-201ENST00000318006 CFAP161Q6P656 301 aa9.34□□□□□ -0.91
VPS39-201ENST00000318006 ZNF114Q8NC26 417 aa9.34□□□□□ -0.91
VPS39-201ENST00000318006 SMIM27A0A1W2PRY6 76 aa9.34□□□□□ -0.91
VPS39-201ENST00000318006 VCYO14598 125 aa9.34□□□□□ -0.91
VPS39-201ENST00000318006 RNASE2P10153 161 aaKnown RBP9.34□□□□□ -0.91
VPS39-201ENST00000318006 COLCA1Q6ZS62 124 aa9.34□□□□□ -0.91
VPS39-201ENST00000318006 FANCMQ8IYD8 2048 aa9.34□□□□□ -0.91
VPS39-201ENST00000318006 IGKV1-6A0A0C4DH72 117 aa9.33□□□□□ -0.92
VPS39-201ENST00000318006 A0A0G2JNJ9 132 aa9.33□□□□□ -0.92
VPS39-201ENST00000318006 H3BMM0 161 aa9.33□□□□□ -0.92
VPS39-201ENST00000318006 MYOD1P15172 320 aa9.33□□□□□ -0.92
VPS39-201ENST00000318006 C20orf204Q6ZNR8 217 aa9.33□□□□□ -0.92
VPS39-201ENST00000318006 UBE2WQ96B02 151 aa9.33□□□□□ -0.92
VPS39-201ENST00000318006 SPANXDQ9BXN6 97 aa9.33□□□□□ -0.92
VPS39-201ENST00000318006 Q9UFV3 132 aa9.33□□□□□ -0.92
VPS39-201ENST00000318006 TMEM178BH3BS89 294 aa9.33□□□□□ -0.92
VPS39-201ENST00000318006 TIMM23O14925 209 aa9.33□□□□□ -0.92
VPS39-201ENST00000318006 IFITM1P13164 125 aa9.33□□□□□ -0.92
VPS39-201ENST00000318006 CD24P25063 80 aa9.33□□□□□ -0.92
VPS39-201ENST00000318006 NPC2P61916 151 aa9.33□□□□□ -0.92
VPS39-201ENST00000318006 UNQ6494/PRO21346Q6UXR6 183 aa9.33□□□□□ -0.92
VPS39-201ENST00000318006 DOCK7Q96N67 2140 aa9.33□□□□□ -0.92
VPS39-201ENST00000318006 RPL15P61313 204 aaKnown RBP9.33□□□□□ -0.92
VPS39-201ENST00000318006 ZNF474Q6S9Z5 364 aaPredicted RBP9.33□□□□□ -0.92
VPS39-201ENST00000318006 LINC01587Q99440 93 aa9.33□□□□□ -0.92
VPS39-201ENST00000318006 TTC28Q96AY4 2481 aa9.32□□□□□ -0.92
VPS39-201ENST00000318006 HELZP42694 1942 aaKnown RBP9.32□□□□□ -0.92
VPS39-201ENST00000318006 DOCK11Q5JSL3 2073 aa9.32□□□□□ -0.92
VPS39-201ENST00000318006 SIVA1O15304 175 aa9.32□□□□□ -0.92
VPS39-201ENST00000318006 FAM104BQ5XKR9 115 aa9.32□□□□□ -0.92
VPS39-201ENST00000318006 TMEM200BQ69YZ2 307 aa9.32□□□□□ -0.92
VPS39-201ENST00000318006 TMEM86BQ8N661 226 aa9.32□□□□□ -0.92
VPS39-201ENST00000318006 DEFB125Q8N687 156 aa9.32□□□□□ -0.92
VPS39-201ENST00000318006 Q8TAT8 98 aa9.32□□□□□ -0.92
VPS39-201ENST00000318006 CRPP02741 224 aa9.32□□□□□ -0.92
VPS39-201ENST00000318006 OVOL2Q9BRP0 275 aa9.32□□□□□ -0.92
VPS39-201ENST00000318006 PYGO2Q9BRQ0 406 aa9.32□□□□□ -0.92
VPS39-201ENST00000318006 CSTL1Q9H114 145 aa9.32□□□□□ -0.92
VPS39-201ENST00000318006 CACNA1BQ00975 2339 aa9.32□□□□□ -0.92
VPS39-201ENST00000318006 TRGV11A0A075B6L2 103 aa9.32□□□□□ -0.92
VPS39-201ENST00000318006 DUSP14O95147 198 aaKnown RBP9.32□□□□□ -0.92
VPS39-201ENST00000318006 HAPLN4Q86UW8 402 aa9.32□□□□□ -0.92
VPS39-201ENST00000318006 CFHR2P36980 270 aa9.31□□□□□ -0.92
VPS39-201ENST00000318006 LINC00205P59089 165 aa9.31□□□□□ -0.92
VPS39-201ENST00000318006 PRSS57Q6UWY2 283 aa9.31□□□□□ -0.92
VPS39-201ENST00000318006 Q6ZVH6 145 aa9.31□□□□□ -0.92
VPS39-201ENST00000318006 C11orf52Q96A22 123 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms