RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 TRAV5A0A0B4J249 113 aa13.74□□□□□ -0.21
HMGA1-201ENST00000311487 CHEK1O14757 476 aa13.74□□□□□ -0.21
HMGA1-201ENST00000311487 COX7A2P2O60397 106 aa13.74□□□□□ -0.21
HMGA1-201ENST00000311487 CD81P60033 236 aa13.74□□□□□ -0.21
HMGA1-201ENST00000311487 GATAD1Q8WUU5 269 aa13.74□□□□□ -0.21
HMGA1-201ENST00000311487 MANBALQ9NQG1 85 aa13.74□□□□□ -0.21
HMGA1-201ENST00000311487 SMPXQ9UHP9 88 aa13.74□□□□□ -0.21
HMGA1-201ENST00000311487 A0A1W2PPV4 95 aa13.74□□□□□ -0.21
HMGA1-201ENST00000311487 G3V4G9 280 aa13.74□□□□□ -0.21
HMGA1-201ENST00000311487 CRYBB3P26998 211 aa13.74□□□□□ -0.21
HMGA1-201ENST00000311487 RPL11P62913 178 aaKnown RBP13.74□□□□□ -0.21
HMGA1-201ENST00000311487 SPATA31B1PQ5VZV4 182 aa13.74□□□□□ -0.21
HMGA1-201ENST00000311487 LINC00305Q7Z4B0 112 aa13.74□□□□□ -0.21
HMGA1-201ENST00000311487 DYNLRB2Q8TF09 96 aa13.74□□□□□ -0.21
HMGA1-201ENST00000311487 SEPSECSQ9HD40 501 aaKnown RBP13.74□□□□□ -0.21
HMGA1-201ENST00000311487 MRPL27Q9P0M9 148 aaKnown RBP13.74□□□□□ -0.21
HMGA1-201ENST00000311487 HIGD1AQ9Y241 93 aa13.74□□□□□ -0.21
HMGA1-201ENST00000311487 BTF3P20290 206 aaKnown RBP13.73□□□□□ -0.21
HMGA1-201ENST00000311487 PSMB3P49720 205 aa13.73□□□□□ -0.21
HMGA1-201ENST00000311487 SSTP61278 116 aa13.73□□□□□ -0.21
HMGA1-201ENST00000311487 MEF2BQ02080 365 aaPredicted RBP13.73□□□□□ -0.21
HMGA1-201ENST00000311487 CD300EQ496F6 205 aaPredicted RBP13.73□□□□□ -0.21
HMGA1-201ENST00000311487 PRR31Q5SQ13 230 aa13.73□□□□□ -0.21
HMGA1-201ENST00000311487 C10orf113Q5VZT2 155 aa13.73□□□□□ -0.21
HMGA1-201ENST00000311487 GBGT1Q8N5D6 347 aa13.73□□□□□ -0.21
HMGA1-201ENST00000311487 NIPSNAP3BQ9BS92 247 aa13.73□□□□□ -0.21
HMGA1-201ENST00000311487 SLC25A39Q9BZJ4 359 aaPredicted RBP13.73□□□□□ -0.21
HMGA1-201ENST00000311487 DNAJC4Q9NNZ3 241 aa13.73□□□□□ -0.21
HMGA1-201ENST00000311487 K7EMT4 169 aa13.72□□□□□ -0.21
HMGA1-201ENST00000311487 TAGLN2P37802 199 aaKnown RBP13.72□□□□□ -0.21
HMGA1-201ENST00000311487 TVP23CQ96ET8 276 aa13.72□□□□□ -0.21
HMGA1-201ENST00000311487 SAV1Q9H4B6 383 aaPredicted RBP13.72□□□□□ -0.21
HMGA1-201ENST00000311487 COLCA2A8K830 154 aa13.72□□□□□ -0.21
HMGA1-201ENST00000311487 TFPI2P48307 235 aa13.72□□□□□ -0.21
HMGA1-201ENST00000311487 BUB3O43684 328 aa13.71□□□□□ -0.21
HMGA1-201ENST00000311487 STAG3L2P0CL84 134 aa13.71□□□□□ -0.21
HMGA1-201ENST00000311487 STAG3L3P0CL85 134 aa13.71□□□□□ -0.21
HMGA1-201ENST00000311487 FAM78BQ5VT40 261 aa13.71□□□□□ -0.21
HMGA1-201ENST00000311487 TUBA4BQ9H853 241 aa13.71□□□□□ -0.21
HMGA1-201ENST00000311487 SORL1Q92673 2214 aa13.71□□□□□ -0.22
HMGA1-201ENST00000311487 GATCO43716 136 aaKnown RBP13.7□□□□□ -0.22
HMGA1-201ENST00000311487 PAGE4O60829 102 aa13.7□□□□□ -0.22
HMGA1-201ENST00000311487 PRB4P10163 310 aaPredicted RBP13.7□□□□□ -0.22
HMGA1-201ENST00000311487 DEFB114Q30KQ6 69 aa13.7□□□□□ -0.22
HMGA1-201ENST00000311487 WFDC3Q8IUB2 231 aa13.7□□□□□ -0.22
HMGA1-201ENST00000311487 C15orf54Q8N8G6 183 aa13.7□□□□□ -0.22
HMGA1-201ENST00000311487 NBEAL1Q6ZS30 2694 aa13.7□□□□□ -0.22
HMGA1-201ENST00000311487 NDUFS6O75380 124 aaKnown RBP13.7□□□□□ -0.22
HMGA1-201ENST00000311487 ARL14EPLP0DKL9 152 aa13.7□□□□□ -0.22
HMGA1-201ENST00000311487 C8orf88P0DMB2 117 aa13.7□□□□□ -0.22
HMGA1-201ENST00000311487 PLP1P60201 277 aa13.7□□□□□ -0.22
HMGA1-201ENST00000311487 MIR17HGQ75NE6 70 aa13.7□□□□□ -0.22
HMGA1-201ENST00000311487 TMEM61Q8N0U2 210 aa13.7□□□□□ -0.22
HMGA1-201ENST00000311487 U3KQE9 123 aa13.7□□□□□ -0.22
HMGA1-201ENST00000311487 TMEM250H0YL14 139 aa13.69□□□□□ -0.22
HMGA1-201ENST00000311487 H3BTX0 84 aa13.69□□□□□ -0.22
HMGA1-201ENST00000311487 RHOBP62745 196 aa13.69□□□□□ -0.22
HMGA1-201ENST00000311487 C9orf66Q5T8R8 295 aa13.69□□□□□ -0.22
HMGA1-201ENST00000311487 TCF24Q7RTU0 167 aa13.69□□□□□ -0.22
HMGA1-201ENST00000311487 OR8I2Q8N0Y5 310 aa13.69□□□□□ -0.22
HMGA1-201ENST00000311487 ISOC2Q96AB3 205 aa13.69□□□□□ -0.22
HMGA1-201ENST00000311487 SHANK2-AS3Q9BTD1 123 aa13.69□□□□□ -0.22
HMGA1-201ENST00000311487 CXorf1O96002 111 aa13.68□□□□□ -0.22
HMGA1-201ENST00000311487 PRB2P02812 416 aaPredicted RBP13.68□□□□□ -0.22
HMGA1-201ENST00000311487 MEOX2P50222 304 aa13.68□□□□□ -0.22
HMGA1-201ENST00000311487 H3BRN7 92 aa13.68□□□□□ -0.22
HMGA1-201ENST00000311487 IGLV1-51P01701 117 aa13.68□□□□□ -0.22
HMGA1-201ENST00000311487 C16orf54Q6UWD8 224 aa13.68□□□□□ -0.22
HMGA1-201ENST00000311487 OR1L4Q8NGR5 311 aa13.68□□□□□ -0.22
HMGA1-201ENST00000311487 HIST1H2BAQ96A08 127 aa13.68□□□□□ -0.22
HMGA1-201ENST00000311487 SDF2L1Q9HCN8 221 aa13.68□□□□□ -0.22
HMGA1-201ENST00000311487 A0A087WWC5 75 aa13.67□□□□□ -0.22
HMGA1-201ENST00000311487 ELOA3CA0A087WX78 387 aaPredicted RBP13.67□□□□□ -0.22
HMGA1-201ENST00000311487 ZNF727A8MUV8 499 aa13.67□□□□□ -0.22
HMGA1-201ENST00000311487 PNRC1Q12796 327 aaPredicted RBP13.67□□□□□ -0.22
HMGA1-201ENST00000311487 RBPMS2Q6ZRY4 209 aaKnown RBP13.67□□□□□ -0.22
HMGA1-201ENST00000311487 A0A1W2PS18 150 aa13.66□□□□□ -0.22
HMGA1-201ENST00000311487 C11orf94C9JXX5 98 aa13.66□□□□□ -0.22
HMGA1-201ENST00000311487 KRTAP10-11P60412 298 aa13.66□□□□□ -0.22
HMGA1-201ENST00000311487 UBE2G2P60604 165 aa13.66□□□□□ -0.22
HMGA1-201ENST00000311487 SIGLEC15Q6ZMC9 328 aa13.66□□□□□ -0.22
HMGA1-201ENST00000311487 STXBP6Q8NFX7 210 aa13.66□□□□□ -0.22
HMGA1-201ENST00000311487 GLMPQ8WWB7 406 aa13.66□□□□□ -0.22
HMGA1-201ENST00000311487 PFDN5Q99471 154 aa13.66□□□□□ -0.22
HMGA1-201ENST00000311487 MCRIP2Q9BUT9 160 aaKnown RBP13.66□□□□□ -0.22
HMGA1-201ENST00000311487 SMAD5-AS1Q9Y6J3 95 aa13.66□□□□□ -0.22
HMGA1-201ENST00000311487 PYYP10082 97 aa13.66□□□□□ -0.22
HMGA1-201ENST00000311487 ATP5G3P48201 142 aa13.66□□□□□ -0.22
HMGA1-201ENST00000311487 AKR1D1P51857 326 aa13.66□□□□□ -0.22
HMGA1-201ENST00000311487 RPUSD4Q96CM3 377 aaKnown RBP13.66□□□□□ -0.22
HMGA1-201ENST00000311487 C17orf77Q96MU5 243 aa13.66□□□□□ -0.22
HMGA1-201ENST00000311487 SMIM7Q9BQ49 75 aa13.66□□□□□ -0.22
HMGA1-201ENST00000311487 PARLQ9H300 379 aa13.66□□□□□ -0.22
HMGA1-201ENST00000311487 OR10J4P0C629 311 aa13.65□□□□□ -0.22
HMGA1-201ENST00000311487 GCHFRP30047 84 aa13.65□□□□□ -0.22
HMGA1-201ENST00000311487 RPL35P42766 123 aaKnown RBP13.65□□□□□ -0.22
HMGA1-201ENST00000311487 IGFL4Q6B9Z1 124 aa13.65□□□□□ -0.22
HMGA1-201ENST00000311487 GRAMD2BQ96HH9 432 aa13.65□□□□□ -0.22
HMGA1-201ENST00000311487 YPEL4Q96NS1 127 aa13.65□□□□□ -0.22
HMGA1-201ENST00000311487 SLC25A2Q9BXI2 301 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms