RNA–Protein interactions for RNA: ENST00000306042.9

PTPRE-202, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best) BASIC

Gene PTPRE, Length 4,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-202ENST00000306042 MAP1LC3AQ9H492 121 aa7.32□□□□□ -1.24
PTPRE-202ENST00000306042 XCL2Q9UBD3 114 aa7.32□□□□□ -1.24
PTPRE-202ENST00000306042 ABCA12Q86UK0 2595 aa7.32□□□□□ -1.24
PTPRE-202ENST00000306042 DOCK11Q5JSL3 2073 aa7.32□□□□□ -1.24
PTPRE-202ENST00000306042 USP9XQ93008 2570 aaPredicted RBP7.32□□□□□ -1.24
PTPRE-202ENST00000306042 M0R2Z0 102 aa7.32□□□□□ -1.24
PTPRE-202ENST00000306042 C1orf194Q5T5A4 169 aa7.32□□□□□ -1.24
PTPRE-202ENST00000306042 USP9YO00507 2555 aaPredicted RBP7.32□□□□□ -1.24
PTPRE-202ENST00000306042 TRGV1A0A0A0MS02 117 aa7.32□□□□□ -1.24
PTPRE-202ENST00000306042 TCAPO15273 167 aa7.32□□□□□ -1.24
PTPRE-202ENST00000306042 SCO1O75880 301 aa7.32□□□□□ -1.24
PTPRE-202ENST00000306042 STAG3L2P0CL84 134 aa7.32□□□□□ -1.24
PTPRE-202ENST00000306042 STAG3L3P0CL85 134 aa7.32□□□□□ -1.24
PTPRE-202ENST00000306042 SFRP2Q96HF1 295 aa7.32□□□□□ -1.24
PTPRE-202ENST00000306042 RCHY1Q96PM5 261 aa7.32□□□□□ -1.24
PTPRE-202ENST00000306042 WFDC1Q9HC57 220 aa7.32□□□□□ -1.24
PTPRE-202ENST00000306042 FOLR2P14207 255 aa7.32□□□□□ -1.24
PTPRE-202ENST00000306042 HERVK_113P61574 105 aa7.32□□□□□ -1.24
PTPRE-202ENST00000306042 LY6G5BQ8NDX9 201 aa7.32□□□□□ -1.24
PTPRE-202ENST00000306042 HSPB9Q9BQS6 159 aa7.32□□□□□ -1.24
PTPRE-202ENST00000306042 TSTD3H0UI37 97 aa7.31□□□□□ -1.24
PTPRE-202ENST00000306042 PPP1R17O96001 155 aa7.31□□□□□ -1.24
PTPRE-202ENST00000306042 HLA-DQA1P01909 254 aa7.31□□□□□ -1.24
PTPRE-202ENST00000306042 ZNF415Q09FC8 603 aa7.31□□□□□ -1.24
PTPRE-202ENST00000306042 TMEM101Q96IK0 257 aa7.31□□□□□ -1.24
PTPRE-202ENST00000306042 PACRGQ96M98 296 aaPredicted RBP7.31□□□□□ -1.24
PTPRE-202ENST00000306042 A0A087X0M5 115 aa7.31□□□□□ -1.24
PTPRE-202ENST00000306042 IGHV7-4-1A0A0J9YVY3 117 aa7.31□□□□□ -1.24
PTPRE-202ENST00000306042 A0A1B0GX30 115 aa7.31□□□□□ -1.24
PTPRE-202ENST00000306042 A6NDX4 124 aa7.31□□□□□ -1.24
PTPRE-202ENST00000306042 CA1P00915 261 aaPredicted RBP7.31□□□□□ -1.24
PTPRE-202ENST00000306042 SLURP1P55000 103 aa7.31□□□□□ -1.24
PTPRE-202ENST00000306042 SRSF4Q08170 494 aaKnown RBP7.31□□□□□ -1.24
PTPRE-202ENST00000306042 Q6AWC8 147 aa7.31□□□□□ -1.24
PTPRE-202ENST00000306042 Q6YL49 198 aa7.31□□□□□ -1.24
PTPRE-202ENST00000306042 ZNF705AQ6ZN79 300 aaPredicted RBP7.31□□□□□ -1.24
PTPRE-202ENST00000306042 RPP21Q9H633 154 aaKnown RBP7.31□□□□□ -1.24
PTPRE-202ENST00000306042 LYPD1Q8N2G4 141 aa7.31□□□□□ -1.24
PTPRE-202ENST00000306042 HTTP42858 3142 aa7.31□□□□□ -1.24
PTPRE-202ENST00000306042 FLNBO75369 2602 aaKnown RBP7.31□□□□□ -1.24
PTPRE-202ENST00000306042 WIPF3A6NGB9 483 aa7.31□□□□□ -1.24
PTPRE-202ENST00000306042 NUDT3O95989 172 aa7.31□□□□□ -1.24
PTPRE-202ENST00000306042 IGHG2P01859 326 aa7.31□□□□□ -1.24
PTPRE-202ENST00000306042 CITED2Q99967 270 aaPredicted RBP7.31□□□□□ -1.24
PTPRE-202ENST00000306042 VSIRQ9H7M9 311 aa7.31□□□□□ -1.24
PTPRE-202ENST00000306042 A0A1B0GUT8 65 aa7.3□□□□□ -1.24
PTPRE-202ENST00000306042 DEFB130BP0DP73 79 aa7.3□□□□□ -1.24
PTPRE-202ENST00000306042 DEFB130AP0DP74 79 aa7.3□□□□□ -1.24
PTPRE-202ENST00000306042 IGLC7A0M8Q6 106 aa7.3□□□□□ -1.24
PTPRE-202ENST00000306042 CRPP02741 224 aa7.3□□□□□ -1.24
PTPRE-202ENST00000306042 CCL20P78556 96 aa7.3□□□□□ -1.24
PTPRE-202ENST00000306042 OR4C5Q8NGB2 326 aa7.3□□□□□ -1.24
PTPRE-202ENST00000306042 LINC00862A6NCI5 91 aa7.3□□□□□ -1.24
PTPRE-202ENST00000306042 GP9P14770 177 aa7.3□□□□□ -1.24
PTPRE-202ENST00000306042 PDE6HQ13956 83 aa7.3□□□□□ -1.24
PTPRE-202ENST00000306042 PRADC1Q9BSG0 188 aa7.3□□□□□ -1.24
PTPRE-202ENST00000306042 HBBP68871 147 aa7.3□□□□□ -1.24
PTPRE-202ENST00000306042 ELOBQ15370 118 aa7.3□□□□□ -1.24
PTPRE-202ENST00000306042 ZNF295-AS1Q8N0V1 137 aa7.3□□□□□ -1.24
PTPRE-202ENST00000306042 SMAD5-AS1Q9Y6J3 95 aa7.29□□□□□ -1.24
PTPRE-202ENST00000306042 PPIFP30405 207 aaKnown RBP7.29□□□□□ -1.24
PTPRE-202ENST00000306042 PAPPA-AS1Q5QFB9 102 aa7.29□□□□□ -1.24
PTPRE-202ENST00000306042 OR8A1Q8NGG7 326 aa7.29□□□□□ -1.24
PTPRE-202ENST00000306042 OR9G4Q8NGQ1 327 aa7.29□□□□□ -1.24
PTPRE-202ENST00000306042 RITA1Q96K30 269 aa7.29□□□□□ -1.24
PTPRE-202ENST00000306042 TMEM89A2RUT3 159 aa7.29□□□□□ -1.24
PTPRE-202ENST00000306042 TCRAP04437 139 aa7.29□□□□□ -1.24
PTPRE-202ENST00000306042 Q8TAT8 98 aa7.29□□□□□ -1.24
PTPRE-202ENST00000306042 MEGF9Q9H1U4 602 aa7.29□□□□□ -1.24
PTPRE-202ENST00000306042 SMPXQ9UHP9 88 aa7.29□□□□□ -1.24
PTPRE-202ENST00000306042 KLK15Q9H2R5 256 aa7.29□□□□□ -1.24
PTPRE-202ENST00000306042 AP5S1Q9NUS5 200 aa7.29□□□□□ -1.24
PTPRE-202ENST00000306042 M0R3E3 92 aa7.28□□□□□ -1.24
PTPRE-202ENST00000306042 IGLC1P0CG04 106 aa7.28□□□□□ -1.24
PTPRE-202ENST00000306042 RPP25LQ8N5L8 163 aaKnown RBP7.28□□□□□ -1.24
PTPRE-202ENST00000306042 H3BVH4 76 aa7.28□□□□□ -1.24
PTPRE-202ENST00000306042 NDUFA11Q86Y39 141 aa7.28□□□□□ -1.24
PTPRE-202ENST00000306042 LYPD6Q86Y78 171 aa7.28□□□□□ -1.24
PTPRE-202ENST00000306042 MAP1LC3CQ9BXW4 147 aa7.28□□□□□ -1.24
PTPRE-202ENST00000306042 ODF3BA8MYP8 253 aa7.28□□□□□ -1.24
PTPRE-202ENST00000306042 DAD1P61803 113 aa7.28□□□□□ -1.24
PTPRE-202ENST00000306042 SPINK13Q1W4C9 94 aa7.28□□□□□ -1.24
PTPRE-202ENST00000306042 CBLN2Q8IUK8 224 aa7.28□□□□□ -1.24
PTPRE-202ENST00000306042 MBD3L1Q8WWY6 194 aa7.28□□□□□ -1.24
PTPRE-202ENST00000306042 AJUBAQ96IF1 538 aa7.28□□□□□ -1.24
PTPRE-202ENST00000306042 HSPB8Q9UJY1 196 aa7.28□□□□□ -1.24
PTPRE-202ENST00000306042 IGHV3-53P01767 116 aa7.28□□□□□ -1.24
PTPRE-202ENST00000306042 RANBP2P49792 3224 aaKnown RBP7.28□□□□□ -1.24
PTPRE-202ENST00000306042 RNF182Q8N6D2 247 aa7.28□□□□□ -1.24
PTPRE-202ENST00000306042 SLC17A3O00476 420 aa7.27□□□□□ -1.25
PTPRE-202ENST00000306042 MDKP21741 143 aaPredicted RBP7.27□□□□□ -1.25
PTPRE-202ENST00000306042 SLAQ13239 276 aa7.27□□□□□ -1.25
PTPRE-202ENST00000306042 SMR3AQ99954 134 aa7.27□□□□□ -1.25
PTPRE-202ENST00000306042 ZNF256Q9Y2P7 627 aaPredicted RBP7.27□□□□□ -1.25
PTPRE-202ENST00000306042 CACNG7P62955 275 aa7.27□□□□□ -1.25
PTPRE-202ENST00000306042 IGHV4OR15-8A0A075B7B6 117 aa7.27□□□□□ -1.25
PTPRE-202ENST00000306042 A0A087WW49 117 aa7.27□□□□□ -1.25
PTPRE-202ENST00000306042 KNCNA6PVL3 124 aa7.27□□□□□ -1.25
PTPRE-202ENST00000306042 PRR31Q5SQ13 230 aa7.27□□□□□ -1.25
PTPRE-202ENST00000306042 SPAG8Q99932 426 aaPredicted RBP7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms