RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 TREML4Q6UXN2 200 aa4.34□□□□□ -1.71
SCN1A-201ENST00000303395 RPP25LQ8N5L8 163 aaKnown RBP4.34□□□□□ -1.71
SCN1A-201ENST00000303395 RHODO00212 210 aa4.34□□□□□ -1.71
SCN1A-201ENST00000303395 MED14OSP0DP75 135 aa4.34□□□□□ -1.71
SCN1A-201ENST00000303395 UBE2BP63146 152 aa4.34□□□□□ -1.71
SCN1A-201ENST00000303395 KLRD1Q13241 179 aa4.34□□□□□ -1.71
SCN1A-201ENST00000303395 MINOS1Q5TGZ0 78 aa4.34□□□□□ -1.71
SCN1A-201ENST00000303395 MIC13Q5XKP0 118 aa4.34□□□□□ -1.71
SCN1A-201ENST00000303395 FER1L6-AS1Q8NA97 138 aa4.34□□□□□ -1.71
SCN1A-201ENST00000303395 VKORC1Q9BQB6 163 aa4.34□□□□□ -1.71
SCN1A-201ENST00000303395 MINOS1-NBL1R4GNA1 71 aa4.34□□□□□ -1.71
SCN1A-201ENST00000303395 FSTL3O95633 263 aa4.34□□□□□ -1.71
SCN1A-201ENST00000303395 TRACP01848 142 aa4.34□□□□□ -1.71
SCN1A-201ENST00000303395 RBM3P98179 157 aaKnown RBP4.34□□□□□ -1.71
SCN1A-201ENST00000303395 ZNF474Q6S9Z5 364 aaPredicted RBP4.34□□□□□ -1.71
SCN1A-201ENST00000303395 TRAV24A0A0B4J272 114 aa4.34□□□□□ -1.71
SCN1A-201ENST00000303395 NSUN5P1Q3KNT7 163 aa4.34□□□□□ -1.71
SCN1A-201ENST00000303395 SPINK14Q6IE38 97 aa4.34□□□□□ -1.71
SCN1A-201ENST00000303395 ATG2AQ2TAZ0 1938 aa4.34□□□□□ -1.71
SCN1A-201ENST00000303395 IGHV1-45A0A0A0MS14 117 aa4.34□□□□□ -1.71
SCN1A-201ENST00000303395 PPIAL4CA0A0B4J2A2 164 aa4.34□□□□□ -1.71
SCN1A-201ENST00000303395 CELA2BP08218 269 aaPredicted RBP4.34□□□□□ -1.71
SCN1A-201ENST00000303395 PPIAL4GP0DN37 164 aa4.34□□□□□ -1.71
SCN1A-201ENST00000303395 CCL2P13500 99 aa4.34□□□□□ -1.71
SCN1A-201ENST00000303395 GNLYP22749 145 aa4.34□□□□□ -1.71
SCN1A-201ENST00000303395 GFERP55789 205 aa4.34□□□□□ -1.71
SCN1A-201ENST00000303395 PRSS47A8MTI9 375 aa4.34□□□□□ -1.72
SCN1A-201ENST00000303395 C12orf77C9JDV5 145 aa4.34□□□□□ -1.72
SCN1A-201ENST00000303395 PRSS46E5RG02 174 aa4.34□□□□□ -1.72
SCN1A-201ENST00000303395 HLA-DMBP28068 263 aa4.34□□□□□ -1.72
SCN1A-201ENST00000303395 LAGE3Q14657 143 aa4.34□□□□□ -1.72
SCN1A-201ENST00000303395 C2orf82Q6UX34 121 aa4.34□□□□□ -1.72
SCN1A-201ENST00000303395 PRSS22Q9GZN4 317 aa4.34□□□□□ -1.72
SCN1A-201ENST00000303395 TRAV12-1A0A0B4J245 112 aa4.34□□□□□ -1.72
SCN1A-201ENST00000303395 IGHV1OR15-9A0A0B4J2B8 117 aa4.34□□□□□ -1.72
SCN1A-201ENST00000303395 IGHV5-51A0A0C4DH38 117 aa4.34□□□□□ -1.72
SCN1A-201ENST00000303395 M0QXV9 152 aa4.34□□□□□ -1.72
SCN1A-201ENST00000303395 GATA2P23769 480 aaPredicted RBP4.34□□□□□ -1.72
SCN1A-201ENST00000303395 SPATA25Q9BR10 227 aa4.34□□□□□ -1.72
SCN1A-201ENST00000303395 AURKAIP1Q9NWT8 199 aaPredicted RBP4.34□□□□□ -1.72
SCN1A-201ENST00000303395 PILRBQ9UKJ0 227 aa4.34□□□□□ -1.72
SCN1A-201ENST00000303395 MP68P56378 58 aa4.33□□□□□ -1.72
SCN1A-201ENST00000303395 KIAA1671Q9BY89 1806 aa4.33□□□□□ -1.72
SCN1A-201ENST00000303395 CASC2Q6XLA1 102 aa4.33□□□□□ -1.72
SCN1A-201ENST00000303395 Q8TCH9 128 aa4.33□□□□□ -1.72
SCN1A-201ENST00000303395 RASL10AQ92737 203 aa4.33□□□□□ -1.72
SCN1A-201ENST00000303395 ITGBL1O95965 494 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-201ENST00000303395 COL9A1P20849 921 aa4.33□□□□□ -1.72
SCN1A-201ENST00000303395 LYPD6Q86Y78 171 aa4.33□□□□□ -1.72
SCN1A-201ENST00000303395 LINC00477Q96M19 166 aa4.33□□□□□ -1.72
SCN1A-201ENST00000303395 PRR15LQ9BU68 103 aa4.33□□□□□ -1.72
SCN1A-201ENST00000303395 C14orf132Q9NPU4 83 aa4.33□□□□□ -1.72
SCN1A-201ENST00000303395 CHCHD2Q9Y6H1 151 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-201ENST00000303395 DENND4CQ5VZ89 1909 aa4.33□□□□□ -1.72
SCN1A-201ENST00000303395 TICRRQ7Z2Z1 1910 aa4.33□□□□□ -1.72
SCN1A-201ENST00000303395 A0A0J9YW62 118 aa4.33□□□□□ -1.72
SCN1A-201ENST00000303395 MED19A0JLT2 244 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-201ENST00000303395 H3BT86 120 aa4.33□□□□□ -1.72
SCN1A-201ENST00000303395 TBX6O95947 436 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-201ENST00000303395 NBL1P41271 181 aa4.33□□□□□ -1.72
SCN1A-201ENST00000303395 FXYD3Q14802 87 aa4.33□□□□□ -1.72
SCN1A-201ENST00000303395 ZAR1Q86SH2 424 aa4.33□□□□□ -1.72
SCN1A-201ENST00000303395 AMELYQ99218 206 aa4.33□□□□□ -1.72
SCN1A-201ENST00000303395 RSPO3Q9BXY4 272 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-201ENST00000303395 C1QCP02747 245 aa4.33□□□□□ -1.72
SCN1A-201ENST00000303395 C3orf79P0CE67 100 aa4.33□□□□□ -1.72
SCN1A-201ENST00000303395 CCL8P80075 99 aa4.33□□□□□ -1.72
SCN1A-201ENST00000303395 RPL36AP83881 106 aaKnown RBP4.33□□□□□ -1.72
SCN1A-201ENST00000303395 CRIPAKQ8N1N5 446 aa4.33□□□□□ -1.72
SCN1A-201ENST00000303395 TMEM256Q8N2U0 113 aa4.33□□□□□ -1.72
SCN1A-201ENST00000303395 RPL36ALQ969Q0 106 aaKnown RBP4.33□□□□□ -1.72
SCN1A-201ENST00000303395 IMMP1LQ96LU5 166 aa4.33□□□□□ -1.72
SCN1A-201ENST00000303395 C1orf147Q96MC9 270 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-201ENST00000303395 A0A0J9YXY3 114 aa4.33□□□□□ -1.72
SCN1A-201ENST00000303395 WFDC11Q8NEX6 87 aa4.33□□□□□ -1.72
SCN1A-201ENST00000303395 MUC7Q8TAX7 377 aa4.33□□□□□ -1.72
SCN1A-201ENST00000303395 NEU4Q8WWR8 484 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-201ENST00000303395 ZNF625Q96I27 306 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-201ENST00000303395 RPL15P61313 204 aaKnown RBP4.33□□□□□ -1.72
SCN1A-201ENST00000303395 RPUSD1Q9UJJ7 312 aaKnown RBP4.33□□□□□ -1.72
SCN1A-201ENST00000303395 H3BUA1 57 aa4.32□□□□□ -1.72
SCN1A-201ENST00000303395 SAP30O75446 220 aa4.32□□□□□ -1.72
SCN1A-201ENST00000303395 PSG1P11464 419 aa4.32□□□□□ -1.72
SCN1A-201ENST00000303395 RPS27P42677 84 aaKnown RBP4.32□□□□□ -1.72
SCN1A-201ENST00000303395 EIF4EBP1Q13541 118 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-201ENST00000303395 C16orf54Q6UWD8 224 aa4.32□□□□□ -1.72
SCN1A-201ENST00000303395 RFLNBQ8N5W9 214 aa4.32□□□□□ -1.72
SCN1A-201ENST00000303395 WFDC9Q8NEX5 89 aa4.32□□□□□ -1.72
SCN1A-201ENST00000303395 GAGE12JA6NER3 117 aa4.32□□□□□ -1.72
SCN1A-201ENST00000303395 GAGE7O76087 117 aa4.32□□□□□ -1.72
SCN1A-201ENST00000303395 GAGE12FP0CL80 117 aa4.32□□□□□ -1.72
SCN1A-201ENST00000303395 GAGE12GP0CL81 117 aa4.32□□□□□ -1.72
SCN1A-201ENST00000303395 GAGE12IP0CL82 117 aa4.32□□□□□ -1.72
SCN1A-201ENST00000303395 GAGE4Q13068 117 aa4.32□□□□□ -1.72
SCN1A-201ENST00000303395 GAGE5Q13069 117 aa4.32□□□□□ -1.72
SCN1A-201ENST00000303395 GAGE6Q13070 117 aa4.32□□□□□ -1.72
SCN1A-201ENST00000303395 PDCD1Q15116 288 aa4.32□□□□□ -1.72
SCN1A-201ENST00000303395 C18orf32Q8TCD1 76 aa4.32□□□□□ -1.72
SCN1A-201ENST00000303395 POLR3KQ9Y2Y1 108 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-201ENST00000303395 NLRC5Q86WI3 1866 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms