RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 SLC38A11Q08AI6 406 aa9□□□□□ -0.97
CD44-203ENST00000278386 BAK1Q16611 211 aa9□□□□□ -0.97
CD44-203ENST00000278386 C4orf46Q504U0 113 aa9□□□□□ -0.97
CD44-203ENST00000278386 TMEM256Q8N2U0 113 aa9□□□□□ -0.97
CD44-203ENST00000278386 LINC01587Q99440 93 aa9□□□□□ -0.97
CD44-203ENST00000278386 SDHCQ99643 169 aaPredicted RBP9□□□□□ -0.97
CD44-203ENST00000278386 ARV1Q9H2C2 271 aa9□□□□□ -0.97
CD44-203ENST00000278386 NPVFQ9HCQ7 196 aa9□□□□□ -0.97
CD44-203ENST00000278386 PMS2P5A8MQ11 134 aa8.99□□□□□ -0.97
CD44-203ENST00000278386 ATP5G1P05496 136 aa8.99□□□□□ -0.97
CD44-203ENST00000278386 OR4E1P0C645 316 aa8.99□□□□□ -0.97
CD44-203ENST00000278386 AZU1P20160 251 aa8.99□□□□□ -0.97
CD44-203ENST00000278386 ATP5G3P48201 142 aa8.99□□□□□ -0.97
CD44-203ENST00000278386 FAM3BP58499 235 aaPredicted RBP8.99□□□□□ -0.97
CD44-203ENST00000278386 PLP1P60201 277 aa8.99□□□□□ -0.97
CD44-203ENST00000278386 FCN2Q15485 313 aa8.99□□□□□ -0.97
CD44-203ENST00000278386 PSG3Q16557 428 aa8.99□□□□□ -0.97
CD44-203ENST00000278386 IAH1Q2TAA2 248 aaPredicted RBP8.99□□□□□ -0.97
CD44-203ENST00000278386 TEPPQ6URK8 271 aa8.99□□□□□ -0.97
CD44-203ENST00000278386 TMEM14EPQ6UXP3 125 aa8.99□□□□□ -0.97
CD44-203ENST00000278386 ZNF575Q86XF7 245 aa8.99□□□□□ -0.97
CD44-203ENST00000278386 OR10P1Q8NGE3 313 aa8.99□□□□□ -0.97
CD44-203ENST00000278386 C16orf74Q96GX8 76 aa8.99□□□□□ -0.97
CD44-203ENST00000278386 SMIM8Q96KF7 97 aa8.99□□□□□ -0.97
CD44-203ENST00000278386 RNF24Q9Y225 148 aa8.99□□□□□ -0.97
CD44-203ENST00000278386 GOSR2O14653 212 aa8.98□□□□□ -0.97
CD44-203ENST00000278386 SNRPCP09234 159 aaKnown RBP8.98□□□□□ -0.97
CD44-203ENST00000278386 CDKN1BP46527 198 aa8.98□□□□□ -0.97
CD44-203ENST00000278386 TAS2R60P59551 318 aa8.98□□□□□ -0.97
CD44-203ENST00000278386 LCN15Q6UWW0 184 aa8.98□□□□□ -0.97
CD44-203ENST00000278386 ZNF546Q86UE3 836 aa8.98□□□□□ -0.97
CD44-203ENST00000278386 RPUSD4Q96CM3 377 aaKnown RBP8.98□□□□□ -0.97
CD44-203ENST00000278386 GSKIPQ9P0R6 139 aa8.98□□□□□ -0.97
CD44-203ENST00000278386 PLAC8L1A1L4L8 177 aa8.97□□□□□ -0.97
CD44-203ENST00000278386 CENPXA8MT69 81 aa8.97□□□□□ -0.97
CD44-203ENST00000278386 FNDC10F2Z333 226 aa8.97□□□□□ -0.97
CD44-203ENST00000278386 COX7A2P2O60397 106 aa8.97□□□□□ -0.97
CD44-203ENST00000278386 TSC22D2O75157 780 aa8.97□□□□□ -0.97
CD44-203ENST00000278386 CXCL2P19875 107 aa8.97□□□□□ -0.97
CD44-203ENST00000278386 PXDC1Q5TGL8 231 aa8.97□□□□□ -0.97
CD44-203ENST00000278386 LINC00305Q7Z4B0 112 aa8.97□□□□□ -0.97
CD44-203ENST00000278386 ZBTB8BQ8NAP8 495 aaPredicted RBP8.97□□□□□ -0.97
CD44-203ENST00000278386 SLC50A1Q9BRV3 221 aa8.97□□□□□ -0.97
CD44-203ENST00000278386 RCL1Q9Y2P8 373 aaKnown RBP8.97□□□□□ -0.97
CD44-203ENST00000278386 TIMM8BQ9Y5J9 83 aaPredicted RBP8.97□□□□□ -0.97
CD44-203ENST00000278386 ABCA13Q86UQ4 5058 aa8.97□□□□□ -0.97
CD44-203ENST00000278386 K7EPK0 472 aa8.96□□□□□ -0.98
CD44-203ENST00000278386 AGPAT2O15120 278 aa8.96□□□□□ -0.98
CD44-203ENST00000278386 CLINT1Q14677 625 aa8.96□□□□□ -0.98
CD44-203ENST00000278386 PATE2Q6UY27 113 aa8.96□□□□□ -0.98
CD44-203ENST00000278386 BPIFA4PQ86YQ2 179 aa8.96□□□□□ -0.98
CD44-203ENST00000278386 TMEM263Q8WUH6 116 aaKnown RBP8.96□□□□□ -0.98
CD44-203ENST00000278386 NOP10Q9NPE3 64 aaKnown RBP8.96□□□□□ -0.98
CD44-203ENST00000278386 ZNF331Q9NQX6 463 aaPredicted RBP8.96□□□□□ -0.98
CD44-203ENST00000278386 NBDYA0A0U1RRE5 68 aa8.95□□□□□ -0.98
CD44-203ENST00000278386 CBY3A6NI87 242 aa8.95□□□□□ -0.98
CD44-203ENST00000278386 H3BTX0 84 aa8.95□□□□□ -0.98
CD44-203ENST00000278386 L7N2F9 121 aa8.95□□□□□ -0.98
CD44-203ENST00000278386 CCSO14618 274 aa8.95□□□□□ -0.98
CD44-203ENST00000278386 MRPS12O15235 138 aaKnown RBP8.95□□□□□ -0.98
CD44-203ENST00000278386 BTCP35070 178 aa8.95□□□□□ -0.98
CD44-203ENST00000278386 CCL18P55774 89 aa8.95□□□□□ -0.98
CD44-203ENST00000278386 TAS2R30P59541 319 aa8.95□□□□□ -0.98
CD44-203ENST00000278386 VAMP2P63027 116 aa8.95□□□□□ -0.98
CD44-203ENST00000278386 ZNF846Q147U1 533 aa8.95□□□□□ -0.98
CD44-203ENST00000278386 OR10J6PQ8NGY7 276 aa8.95□□□□□ -0.98
CD44-203ENST00000278386 RNF141Q8WVD5 230 aa8.95□□□□□ -0.98
CD44-203ENST00000278386 PARD6GQ9BYG4 376 aaPredicted RBP8.95□□□□□ -0.98
CD44-203ENST00000278386 FAM25EA8MYX2 175 aa8.94□□□□□ -0.98
CD44-203ENST00000278386 H7BYZ3 331 aa8.94□□□□□ -0.98
CD44-203ENST00000278386 J3KRW8 73 aa8.94□□□□□ -0.98
CD44-203ENST00000278386 SLC17A3O00476 420 aa8.94□□□□□ -0.98
CD44-203ENST00000278386 MBPP02686 304 aaPredicted RBP8.94□□□□□ -0.98
CD44-203ENST00000278386 BCAP31P51572 246 aa8.94□□□□□ -0.98
CD44-203ENST00000278386 TNP2Q05952 138 aa8.94□□□□□ -0.98
CD44-203ENST00000278386 ARL16Q0P5N6 197 aa8.94□□□□□ -0.98
CD44-203ENST00000278386 C10orf113Q5VZT2 155 aa8.94□□□□□ -0.98
CD44-203ENST00000278386 ZNF493Q6ZR52 646 aa8.94□□□□□ -0.98
CD44-203ENST00000278386 CCDC28AQ8IWP9 274 aa8.94□□□□□ -0.98
CD44-203ENST00000278386 C6orf223Q8N319 242 aa8.94□□□□□ -0.98
CD44-203ENST00000278386 ZNRF2Q8NHG8 242 aa8.94□□□□□ -0.98
CD44-203ENST00000278386 RNASE8Q8TDE3 154 aaKnown RBP8.94□□□□□ -0.98
CD44-203ENST00000278386 MITD1Q8WV92 249 aa8.94□□□□□ -0.98
CD44-203ENST00000278386 MGST2Q99735 147 aa8.94□□□□□ -0.98
CD44-203ENST00000278386 GGACTQ9BVM4 153 aa8.94□□□□□ -0.98
CD44-203ENST00000278386 C20orf85Q9H1P6 137 aa8.94□□□□□ -0.98
CD44-203ENST00000278386 NDUFA13Q9P0J0 144 aa8.94□□□□□ -0.98
CD44-203ENST00000278386 LSM5Q9Y4Y9 91 aaKnown RBP8.94□□□□□ -0.98
CD44-203ENST00000278386 C7orf66A4D0T2 115 aa8.93□□□□□ -0.98
CD44-203ENST00000278386 C16orf90A8MZG2 172 aa8.93□□□□□ -0.98
CD44-203ENST00000278386 SNURFLB1AK76 121 aa8.93□□□□□ -0.98
CD44-203ENST00000278386 IL7P13232 177 aa8.93□□□□□ -0.98
CD44-203ENST00000278386 CAV2P51636 162 aa8.93□□□□□ -0.98
CD44-203ENST00000278386 OR5I1Q13606 314 aa8.93□□□□□ -0.98
CD44-203ENST00000278386 KIR3DS1Q14943 382 aa8.93□□□□□ -0.98
CD44-203ENST00000278386 OPCMLQ14982 345 aa8.93□□□□□ -0.98
CD44-203ENST00000278386 GFI1BQ5VTD9 330 aa8.93□□□□□ -0.98
CD44-203ENST00000278386 C20orf144Q9BQM9 153 aa8.93□□□□□ -0.98
CD44-203ENST00000278386 LINC00588Q9Y4M8 146 aa8.93□□□□□ -0.98
CD44-203ENST00000278386 PXMP4Q9Y6I8 212 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms