RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 C5orf64Q2M2E5 130 aa13.09□□□□□ -0.31
VPS54-201ENST00000272322 INS-IGF2F8WCM5 200 aa13.09□□□□□ -0.31
VPS54-201ENST00000272322 HLA-DRB1P01911 266 aa13.09□□□□□ -0.31
VPS54-201ENST00000272322 HBBP68871 147 aa13.09□□□□□ -0.31
VPS54-201ENST00000272322 TMEM75Q8N9X5 138 aa13.09□□□□□ -0.31
VPS54-201ENST00000272322 ALKBH7Q9BT30 221 aaPredicted RBP13.09□□□□□ -0.31
VPS54-201ENST00000272322 MSRB2Q9Y3D2 182 aa13.09□□□□□ -0.31
VPS54-201ENST00000272322 G3V318 75 aa13.09□□□□□ -0.31
VPS54-201ENST00000272322 C8orf31Q8N9H6 132 aa13.09□□□□□ -0.31
VPS54-201ENST00000272322 PPIFP30405 207 aaKnown RBP13.08□□□□□ -0.31
VPS54-201ENST00000272322 GPR183P32249 361 aa13.08□□□□□ -0.31
VPS54-201ENST00000272322 Q86TA4 180 aa13.08□□□□□ -0.31
VPS54-201ENST00000272322 CHRDL1Q9BU40 450 aa13.08□□□□□ -0.31
VPS54-201ENST00000272322 J3KRW8 73 aa13.08□□□□□ -0.32
VPS54-201ENST00000272322 ARPC1AQ92747 370 aa13.08□□□□□ -0.32
VPS54-201ENST00000272322 TNFRSF14Q92956 283 aa13.08□□□□□ -0.32
VPS54-201ENST00000272322 C7orf69Q9H7B7 122 aa13.08□□□□□ -0.32
VPS54-201ENST00000272322 CHODLQ9H9P2 273 aa13.08□□□□□ -0.32
VPS54-201ENST00000272322 EPG5Q9HCE0 2579 aa13.07□□□□□ -0.32
VPS54-201ENST00000272322 IGKV3-7A0A075B6H7 116 aa13.07□□□□□ -0.32
VPS54-201ENST00000272322 KIR2DL5BA0A0G2JN68 375 aa13.07□□□□□ -0.32
VPS54-201ENST00000272322 KIR2DL5BA0A0G2JPC4 375 aa13.07□□□□□ -0.32
VPS54-201ENST00000272322 LY6LH3BQJ8 138 aa13.07□□□□□ -0.32
VPS54-201ENST00000272322 TOMM40O96008 361 aa13.07□□□□□ -0.32
VPS54-201ENST00000272322 OR10J3Q5JRS4 329 aa13.07□□□□□ -0.32
VPS54-201ENST00000272322 DNLZQ5SXM8 178 aa13.07□□□□□ -0.32
VPS54-201ENST00000272322 KIR2DL5AQ8N109 375 aa13.07□□□□□ -0.32
VPS54-201ENST00000272322 MLST8Q9BVC4 326 aa13.07□□□□□ -0.32
VPS54-201ENST00000272322 SNAI2O43623 268 aa13.07□□□□□ -0.32
VPS54-201ENST00000272322 CEACAM3P40198 252 aa13.07□□□□□ -0.32
VPS54-201ENST00000272322 HINT1P49773 126 aaPredicted RBP13.07□□□□□ -0.32
VPS54-201ENST00000272322 TEX43Q6ZNM6 134 aa13.07□□□□□ -0.32
VPS54-201ENST00000272322 SPATA12Q7Z6I5 190 aa13.07□□□□□ -0.32
VPS54-201ENST00000272322 Q8N976 141 aa13.07□□□□□ -0.32
VPS54-201ENST00000272322 FANCD2OSQ96PS1 177 aa13.07□□□□□ -0.32
VPS54-201ENST00000272322 C2orf88Q9BSF0 95 aa13.07□□□□□ -0.32
VPS54-201ENST00000272322 BPESC1Q9GZL8 116 aa13.07□□□□□ -0.32
VPS54-201ENST00000272322 CFHR4Q92496 578 aa13.07□□□□□ -0.32
VPS54-201ENST00000272322 PSG8Q9UQ74 426 aa13.07□□□□□ -0.32
VPS54-201ENST00000272322 NPIPB5A8MRT5 1133 aa13.06□□□□□ -0.32
VPS54-201ENST00000272322 LTAP01374 205 aa13.06□□□□□ -0.32
VPS54-201ENST00000272322 FMC1Q96HJ9 113 aa13.06□□□□□ -0.32
VPS54-201ENST00000272322 MIEN1Q9BRT3 115 aa13.06□□□□□ -0.32
VPS54-201ENST00000272322 C21orf62Q9NYP8 219 aa13.06□□□□□ -0.32
VPS54-201ENST00000272322 TRBV19A0A075B6N1 114 aa13.06□□□□□ -0.32
VPS54-201ENST00000272322 NUTF2P61970 127 aaKnown RBP13.06□□□□□ -0.32
VPS54-201ENST00000272322 WFDC3Q8IUB2 231 aa13.06□□□□□ -0.32
VPS54-201ENST00000272322 ZNF462Q96JM2 2506 aa13.06□□□□□ -0.32
VPS54-201ENST00000272322 BRD3OSQ6XYD6 125 aa13.05□□□□□ -0.32
VPS54-201ENST00000272322 OTORQ9NRC9 128 aa13.05□□□□□ -0.32
VPS54-201ENST00000272322 SOX21Q9Y651 276 aaPredicted RBP13.05□□□□□ -0.32
VPS54-201ENST00000272322 FAM181BA6NEQ2 426 aa13.05□□□□□ -0.32
VPS54-201ENST00000272322 MRPL27Q9P0M9 148 aaKnown RBP13.05□□□□□ -0.32
VPS54-201ENST00000272322 IGLV2-11P01706 119 aa13.05□□□□□ -0.32
VPS54-201ENST00000272322 PRTN3P24158 256 aa13.05□□□□□ -0.32
VPS54-201ENST00000272322 UNQ5815/PRO19632Q6UWF5 114 aa13.05□□□□□ -0.32
VPS54-201ENST00000272322 RBPMS2Q6ZRY4 209 aaKnown RBP13.05□□□□□ -0.32
VPS54-201ENST00000272322 FAM231DQ6ZW35 169 aa13.05□□□□□ -0.32
VPS54-201ENST00000272322 RNF182Q8N6D2 247 aa13.05□□□□□ -0.32
VPS54-201ENST00000272322 SHANK2-AS3Q9BTD1 123 aa13.05□□□□□ -0.32
VPS54-201ENST00000272322 hDV102S1A0JD36 115 aa13.04□□□□□ -0.32
VPS54-201ENST00000272322 TMEM213A2RRL7 107 aa13.04□□□□□ -0.32
VPS54-201ENST00000272322 DMRTA1Q5VZB9 504 aa13.04□□□□□ -0.32
VPS54-201ENST00000272322 URB1-AS1Q96HZ7 61 aa13.04□□□□□ -0.32
VPS54-201ENST00000272322 IGSF10Q6WRI0 2623 aa13.04□□□□□ -0.32
VPS54-201ENST00000272322 ZNF785A8K8V0 405 aa13.04□□□□□ -0.32
VPS54-201ENST00000272322 CRIP1P50238 77 aa13.04□□□□□ -0.32
VPS54-201ENST00000272322 MFAP4P55083 255 aa13.04□□□□□ -0.32
VPS54-201ENST00000272322 SMKR1H3BMG3 65 aa13.04□□□□□ -0.32
VPS54-201ENST00000272322 C19orf84I3L1E1 186 aa13.04□□□□□ -0.32
VPS54-201ENST00000272322 CLEC3BP05452 202 aa13.04□□□□□ -0.32
VPS54-201ENST00000272322 SIGLEC15Q6ZMC9 328 aa13.04□□□□□ -0.32
VPS54-201ENST00000272322 KLF12Q9Y4X4 402 aa13.04□□□□□ -0.32
VPS54-201ENST00000272322 HNRNPA3P51991 378 aaKnown RBP13.03□□□□□ -0.32
VPS54-201ENST00000272322 AAMDCQ9H7C9 122 aa13.03□□□□□ -0.32
VPS54-201ENST00000272322 CT45A10P0DMU9 189 aa13.03□□□□□ -0.32
VPS54-201ENST00000272322 ERCC8Q13216 396 aa13.03□□□□□ -0.32
VPS54-201ENST00000272322 FAM106CPP0CH98 169 aa13.03□□□□□ -0.32
VPS54-201ENST00000272322 ESDP10768 282 aa13.03□□□□□ -0.32
VPS54-201ENST00000272322 C15orf32Q32M92 178 aa13.03□□□□□ -0.32
VPS54-201ENST00000272322 FAM106AQ4KMX7 169 aa13.03□□□□□ -0.32
VPS54-201ENST00000272322 CLEC19AQ6UXS0 136 aa13.03□□□□□ -0.32
VPS54-201ENST00000272322 ZNF414Q96IQ9 312 aa13.03□□□□□ -0.32
VPS54-201ENST00000272322 VGLL1Q99990 258 aa13.03□□□□□ -0.32
VPS54-201ENST00000272322 RAB4AP20338 218 aa13.02□□□□□ -0.32
VPS54-201ENST00000272322 NHLH1Q02575 133 aa13.02□□□□□ -0.32
VPS54-201ENST00000272322 LY6G5BQ8NDX9 201 aa13.02□□□□□ -0.32
VPS54-201ENST00000272322 NAV2Q8IVL1 2488 aa13.02□□□□□ -0.32
VPS54-201ENST00000272322 C19orf71A6NCJ1 209 aa13.02□□□□□ -0.33
VPS54-201ENST00000272322 SPRY2O43597 315 aa13.02□□□□□ -0.33
VPS54-201ENST00000272322 SAA4P35542 130 aa13.02□□□□□ -0.33
VPS54-201ENST00000272322 C1RLQ9NZP8 487 aa13.02□□□□□ -0.33
VPS54-201ENST00000272322 RELQ04864 619 aaPredicted RBP13.01□□□□□ -0.33
VPS54-201ENST00000272322 LY6EQ16553 131 aa13.01□□□□□ -0.33
VPS54-201ENST00000272322 WNK1Q9H4A3 2382 aa13.01□□□□□ -0.33
VPS54-201ENST00000272322 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.01□□□□□ -0.33
VPS54-201ENST00000272322 LEPROTL1O95214 131 aa13.01□□□□□ -0.33
VPS54-201ENST00000272322 GNLYP22749 145 aa13.01□□□□□ -0.33
VPS54-201ENST00000272322 PRSS22Q9GZN4 317 aa13.01□□□□□ -0.33
VPS54-201ENST00000272322 H3BRN7 92 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms