RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 SRSF8Q9BRL6 282 aaKnown RBP11.46□□□□□ -0.58
CCDC88A-201ENST00000263630 FAM219BQ5XKK7 198 aa11.46□□□□□ -0.58
CCDC88A-201ENST00000263630 CRYBA4P53673 196 aa11.45□□□□□ -0.58
CCDC88A-201ENST00000263630 C3orf56Q8N813 242 aa11.45□□□□□ -0.58
CCDC88A-201ENST00000263630 TSSC4Q9Y5U2 329 aaPredicted RBP11.45□□□□□ -0.58
CCDC88A-201ENST00000263630 LRP5O75197 1615 aa11.45□□□□□ -0.58
CCDC88A-201ENST00000263630 FREM1Q5H8C1 2179 aa11.45□□□□□ -0.58
CCDC88A-201ENST00000263630 A0A0A6YYD4 124 aa11.45□□□□□ -0.58
CCDC88A-201ENST00000263630 FXYD7P58549 80 aa11.45□□□□□ -0.58
CCDC88A-201ENST00000263630 C4orf48Q5BLP8 95 aa11.45□□□□□ -0.58
CCDC88A-201ENST00000263630 FAM104BQ5XKR9 115 aa11.45□□□□□ -0.58
CCDC88A-201ENST00000263630 ACACAQ13085 2346 aa11.45□□□□□ -0.58
CCDC88A-201ENST00000263630 PIP4P2Q8N4L2 257 aa11.45□□□□□ -0.58
CCDC88A-201ENST00000263630 HELZP42694 1942 aaKnown RBP11.45□□□□□ -0.58
CCDC88A-201ENST00000263630 LINC01590Q5TEZ4 76 aa11.45□□□□□ -0.58
CCDC88A-201ENST00000263630 C1QL2Q7Z5L3 287 aa11.45□□□□□ -0.58
CCDC88A-201ENST00000263630 RNF222A6NCQ9 220 aa11.44□□□□□ -0.58
CCDC88A-201ENST00000263630 IGHV1-2P23083 117 aa11.44□□□□□ -0.58
CCDC88A-201ENST00000263630 CARD19Q96LW7 228 aa11.44□□□□□ -0.58
CCDC88A-201ENST00000263630 A0A1B0GX51 115 aa11.44□□□□□ -0.58
CCDC88A-201ENST00000263630 HERVK_113P63121 156 aa11.44□□□□□ -0.58
CCDC88A-201ENST00000263630 ID3Q02535 119 aa11.44□□□□□ -0.58
CCDC88A-201ENST00000263630 SMIM20Q8N5G0 67 aa11.44□□□□□ -0.58
CCDC88A-201ENST00000263630 TP53TG1Q9Y2A0 90 aa11.44□□□□□ -0.58
CCDC88A-201ENST00000263630 IGKV1-8A0A0C4DH67 115 aa11.44□□□□□ -0.58
CCDC88A-201ENST00000263630 PROP1O75360 226 aa11.44□□□□□ -0.58
CCDC88A-201ENST00000263630 VWC2Q2TAL6 325 aa11.44□□□□□ -0.58
CCDC88A-201ENST00000263630 RNF126Q9BV68 326 aa11.44□□□□□ -0.58
CCDC88A-201ENST00000263630 A0A087WWL8 130 aa11.44□□□□□ -0.58
CCDC88A-201ENST00000263630 PPP1R32Q7Z5V6 425 aa11.44□□□□□ -0.58
CCDC88A-201ENST00000263630 GAGE12HA6NDE8 117 aa11.44□□□□□ -0.58
CCDC88A-201ENST00000263630 GREM1O60565 184 aa11.44□□□□□ -0.58
CCDC88A-201ENST00000263630 TAF1LQ8IZX4 1826 aa11.44□□□□□ -0.58
CCDC88A-201ENST00000263630 VMO1Q7Z5L0 202 aa11.44□□□□□ -0.58
CCDC88A-201ENST00000263630 VSIRQ9H7M9 311 aa11.44□□□□□ -0.58
CCDC88A-201ENST00000263630 DAZ1Q9NQZ3 744 aaKnown RBP11.44□□□□□ -0.58
CCDC88A-201ENST00000263630 CACNA1EQ15878 2313 aa11.44□□□□□ -0.58
CCDC88A-201ENST00000263630 LTBP4Q8N2S1 1624 aa11.44□□□□□ -0.58
CCDC88A-201ENST00000263630 UBE2E2Q96LR5 201 aa11.44□□□□□ -0.58
CCDC88A-201ENST00000263630 IGHV2-26A0A0B4J1V2 119 aa11.43□□□□□ -0.58
CCDC88A-201ENST00000263630 C1orf53Q5VUE5 145 aa11.43□□□□□ -0.58
CCDC88A-201ENST00000263630 LCNL1Q6ZST4 164 aa11.43□□□□□ -0.58
CCDC88A-201ENST00000263630 TMEM75Q8N9X5 138 aa11.43□□□□□ -0.58
CCDC88A-201ENST00000263630 C3orf79P0CE67 100 aa11.43□□□□□ -0.58
CCDC88A-201ENST00000263630 SAP25Q8TEE9 199 aa11.43□□□□□ -0.58
CCDC88A-201ENST00000263630 CNOT1A5YKK6 2376 aaKnown RBP11.43□□□□□ -0.58
CCDC88A-201ENST00000263630 CFPP27918 469 aa11.43□□□□□ -0.58
CCDC88A-201ENST00000263630 C20orf204Q6ZNR8 217 aa11.43□□□□□ -0.58
CCDC88A-201ENST00000263630 AMN1Q8IY45 258 aa11.43□□□□□ -0.58
CCDC88A-201ENST00000263630 TREML4Q6UXN2 200 aa11.43□□□□□ -0.58
CCDC88A-201ENST00000263630 DKK4Q9UBT3 224 aa11.43□□□□□ -0.58
CCDC88A-201ENST00000263630 LINC01551Q86U37 167 aa11.43□□□□□ -0.58
CCDC88A-201ENST00000263630 SIGLEC12Q96PQ1 595 aa11.43□□□□□ -0.58
CCDC88A-201ENST00000263630 ZMAT4Q9H898 229 aa11.43□□□□□ -0.58
CCDC88A-201ENST00000263630 FAM201AQ5SY85 155 aa11.43□□□□□ -0.58
CCDC88A-201ENST00000263630 FAM231BA6NCW3 169 aa11.42□□□□□ -0.58
CCDC88A-201ENST00000263630 CD24P25063 80 aa11.42□□□□□ -0.58
CCDC88A-201ENST00000263630 ATOX1O00244 68 aa11.42□□□□□ -0.58
CCDC88A-201ENST00000263630 BMPERQ8N8U9 685 aa11.42□□□□□ -0.58
CCDC88A-201ENST00000263630 NRXN3Q9Y4C0 1643 aa11.42□□□□□ -0.58
CCDC88A-201ENST00000263630 WDR83OSQ9Y284 106 aa11.42□□□□□ -0.58
CCDC88A-201ENST00000263630 A0A1W2PR77 199 aa11.42□□□□□ -0.58
CCDC88A-201ENST00000263630 PRSS29PA6NIE9 313 aa11.42□□□□□ -0.58
CCDC88A-201ENST00000263630 FNDC10F2Z333 226 aa11.42□□□□□ -0.58
CCDC88A-201ENST00000263630 M0R1W7 72 aa11.42□□□□□ -0.58
CCDC88A-201ENST00000263630 CDKN1AP38936 164 aa11.42□□□□□ -0.58
CCDC88A-201ENST00000263630 CEND1Q8N111 149 aa11.42□□□□□ -0.58
CCDC88A-201ENST00000263630 RNASE2P10153 161 aaKnown RBP11.42□□□□□ -0.58
CCDC88A-201ENST00000263630 TET1Q8NFU7 2136 aa11.42□□□□□ -0.58
CCDC88A-201ENST00000263630 J3KT08 172 aa11.42□□□□□ -0.58
CCDC88A-201ENST00000263630 LINC01545Q5VT33 79 aa11.42□□□□□ -0.58
CCDC88A-201ENST00000263630 NRTNQ99748 197 aa11.42□□□□□ -0.58
CCDC88A-201ENST00000263630 KLHDC3Q9BQ90 382 aa11.42□□□□□ -0.58
CCDC88A-201ENST00000263630 LOC101059948A0A1B0GTJ6 334 aa11.41□□□□□ -0.58
CCDC88A-201ENST00000263630 CFHR4Q92496 578 aa11.41□□□□□ -0.58
CCDC88A-201ENST00000263630 NYNRINQ9P2P1 1898 aaKnown RBP11.41□□□□□ -0.58
CCDC88A-201ENST00000263630 ARHGAP21Q5T5U3 1957 aa11.41□□□□□ -0.58
CCDC88A-201ENST00000263630 AZU1P20160 251 aa11.41□□□□□ -0.58
CCDC88A-201ENST00000263630 TINCRA0A1B0GVN0 87 aa11.41□□□□□ -0.58
CCDC88A-201ENST00000263630 ATRAIDQ6UW56 229 aa11.41□□□□□ -0.58
CCDC88A-201ENST00000263630 CXCL1P09341 107 aa11.4□□□□□ -0.58
CCDC88A-201ENST00000263630 CTHRC1Q96CG8 243 aa11.4□□□□□ -0.58
CCDC88A-201ENST00000263630 PSPNO60542 156 aa11.4□□□□□ -0.58
CCDC88A-201ENST00000263630 TRPM3Q9HCF6 1732 aaPredicted RBP11.4□□□□□ -0.58
CCDC88A-201ENST00000263630 B4DSR2 109 aa11.4□□□□□ -0.58
CCDC88A-201ENST00000263630 K7EP13 123 aa11.4□□□□□ -0.58
CCDC88A-201ENST00000263630 SLC25A45Q8N413 288 aa11.4□□□□□ -0.58
CCDC88A-201ENST00000263630 CHCHD2Q9Y6H1 151 aaPredicted RBP11.4□□□□□ -0.58
CCDC88A-201ENST00000263630 A0A1B0GTI1 187 aa11.4□□□□□ -0.58
CCDC88A-201ENST00000263630 MSRB2Q9Y3D2 182 aa11.4□□□□□ -0.59
CCDC88A-201ENST00000263630 MRPL55Q7Z7F7 128 aaKnown RBP11.4□□□□□ -0.59
CCDC88A-201ENST00000263630 A8MWP6 167 aa11.39□□□□□ -0.59
CCDC88A-201ENST00000263630 DEFB105AQ8NG35 78 aa11.39□□□□□ -0.59
CCDC88A-201ENST00000263630 NDPQ00604 133 aa11.39□□□□□ -0.59
CCDC88A-201ENST00000263630 A0A1W2PPM0 123 aa11.39□□□□□ -0.59
CCDC88A-201ENST00000263630 SELENOKQ9Y6D0 94 aa11.39□□□□□ -0.59
CCDC88A-201ENST00000263630 TANC2Q9HCD6 1990 aa11.39□□□□□ -0.59
CCDC88A-201ENST00000263630 K7EP34 96 aa11.39□□□□□ -0.59
CCDC88A-201ENST00000263630 IGHV1-3A0A0C4DH29 117 aa11.39□□□□□ -0.59
CCDC88A-201ENST00000263630 DEFB104AQ8WTQ1 72 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms