RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 C5orf64Q2M2E5 130 aa6.78□□□□□ -1.32
VPS4B-201ENST00000238497 C1orf122Q6ZSJ8 110 aa6.78□□□□□ -1.32
VPS4B-201ENST00000238497 TCF24Q7RTU0 167 aa6.78□□□□□ -1.32
VPS4B-201ENST00000238497 BEND2Q8NDZ0 799 aa6.78□□□□□ -1.32
VPS4B-201ENST00000238497 OR4A5Q8NH83 315 aa6.78□□□□□ -1.32
VPS4B-201ENST00000238497 ARPC1AQ92747 370 aa6.78□□□□□ -1.32
VPS4B-201ENST00000238497 YPEL4Q96NS1 127 aa6.78□□□□□ -1.32
VPS4B-201ENST00000238497 MRPL18Q9H0U6 180 aaKnown RBP6.78□□□□□ -1.32
VPS4B-201ENST00000238497 CLPSL1A2RUU4 121 aa6.78□□□□□ -1.32
VPS4B-201ENST00000238497 LINC01548A6NM66 108 aa6.78□□□□□ -1.32
VPS4B-201ENST00000238497 PEX7O00628 323 aa6.78□□□□□ -1.32
VPS4B-201ENST00000238497 PMCHP20382 165 aa6.78□□□□□ -1.32
VPS4B-201ENST00000238497 NDPQ00604 133 aa6.78□□□□□ -1.32
VPS4B-201ENST00000238497 MAJINQ3KP22 176 aa6.78□□□□□ -1.32
VPS4B-201ENST00000238497 HIST2H2BDQ6DRA6 164 aa6.78□□□□□ -1.32
VPS4B-201ENST00000238497 FAM167A-AS1Q96KT0 104 aa6.78□□□□□ -1.32
VPS4B-201ENST00000238497 TMEM68Q96MH6 324 aa6.78□□□□□ -1.32
VPS4B-201ENST00000238497 TCEAL7Q9BRU2 100 aa6.78□□□□□ -1.32
VPS4B-201ENST00000238497 Q9H3A6 140 aa6.78□□□□□ -1.32
VPS4B-201ENST00000238497 ZNF331Q9NQX6 463 aaPredicted RBP6.78□□□□□ -1.32
VPS4B-201ENST00000238497 TEX22C9J3V5 150 aa6.77□□□□□ -1.33
VPS4B-201ENST00000238497 CRISP2P16562 243 aa6.77□□□□□ -1.33
VPS4B-201ENST00000238497 LCNL1Q6ZST4 164 aa6.77□□□□□ -1.33
VPS4B-201ENST00000238497 HIST3H2BBQ8N257 126 aa6.77□□□□□ -1.33
VPS4B-201ENST00000238497 TMEM86BQ8N661 226 aa6.77□□□□□ -1.33
VPS4B-201ENST00000238497 OR5R1Q8NH85 324 aa6.77□□□□□ -1.33
VPS4B-201ENST00000238497 TMEM242Q9NWH2 141 aa6.77□□□□□ -1.33
VPS4B-201ENST00000238497 FBXL7Q9UJT9 491 aa6.77□□□□□ -1.33
VPS4B-201ENST00000238497 PITPNC1Q9UKF7 332 aa6.77□□□□□ -1.33
VPS4B-201ENST00000238497 DMRT1Q9Y5R6 373 aa6.77□□□□□ -1.33
VPS4B-201ENST00000238497 TRRAPQ9Y4A5 3859 aa6.77□□□□□ -1.33
VPS4B-201ENST00000238497 H0Y8G0 127 aa6.77□□□□□ -1.33
VPS4B-201ENST00000238497 FAM106CPP0CH98 169 aa6.77□□□□□ -1.33
VPS4B-201ENST00000238497 HIST1H2BLQ99880 126 aa6.77□□□□□ -1.33
VPS4B-201ENST00000238497 ZNF747Q9BV97 191 aa6.77□□□□□ -1.33
VPS4B-201ENST00000238497 GSN-AS1Q9NRJ2 163 aa6.77□□□□□ -1.33
VPS4B-201ENST00000238497 ELOA3CA0A087WX78 387 aaPredicted RBP6.76□□□□□ -1.33
VPS4B-201ENST00000238497 NDUFB8O95169 186 aa6.76□□□□□ -1.33
VPS4B-201ENST00000238497 IGHV3-11P01762 117 aa6.76□□□□□ -1.33
VPS4B-201ENST00000238497 CCDC144NLQ6NUI1 221 aa6.76□□□□□ -1.33
VPS4B-201ENST00000238497 Q6ZSV7 163 aa6.76□□□□□ -1.33
VPS4B-201ENST00000238497 OR4F17Q8NGA8 305 aa6.76□□□□□ -1.33
VPS4B-201ENST00000238497 LINC01006Q8NI28 216 aa6.76□□□□□ -1.33
VPS4B-201ENST00000238497 PGLYRP4Q96LB8 373 aa6.76□□□□□ -1.33
VPS4B-201ENST00000238497 SLC25A39Q9BZJ4 359 aaPredicted RBP6.76□□□□□ -1.33
VPS4B-201ENST00000238497 F2Z2F3 143 aa6.76□□□□□ -1.33
VPS4B-201ENST00000238497 NUPR1O60356 82 aa6.76□□□□□ -1.33
VPS4B-201ENST00000238497 BRS3P32247 399 aa6.76□□□□□ -1.33
VPS4B-201ENST00000238497 FOXA3P55318 350 aaPredicted RBP6.76□□□□□ -1.33
VPS4B-201ENST00000238497 MRGPRG-AS1Q2M3A8 158 aa6.76□□□□□ -1.33
VPS4B-201ENST00000238497 CLEC19AQ6UXS0 136 aa6.76□□□□□ -1.33
VPS4B-201ENST00000238497 BTF3L4Q96K17 158 aa6.76□□□□□ -1.33
VPS4B-201ENST00000238497 IL36BQ9NZH7 164 aa6.76□□□□□ -1.33
VPS4B-201ENST00000238497 A0A087X0M5 115 aa6.76□□□□□ -1.33
VPS4B-201ENST00000238497 A0A1B0GX30 115 aa6.76□□□□□ -1.33
VPS4B-201ENST00000238497 ZNF253O75346 499 aa6.76□□□□□ -1.33
VPS4B-201ENST00000238497 IGLC1P0CG04 106 aa6.76□□□□□ -1.33
VPS4B-201ENST00000238497 RPL19P84098 196 aaKnown RBP6.76□□□□□ -1.33
VPS4B-201ENST00000238497 FXYD5Q96DB9 178 aa6.76□□□□□ -1.33
VPS4B-201ENST00000238497 NOL4LQ96MY1 436 aaPredicted RBP6.76□□□□□ -1.33
VPS4B-201ENST00000238497 HSPB9Q9BQS6 159 aa6.76□□□□□ -1.33
VPS4B-201ENST00000238497 MRPL32Q9BYC8 188 aaKnown RBP6.76□□□□□ -1.33
VPS4B-201ENST00000238497 EPDR1Q9UM22 224 aa6.76□□□□□ -1.33
VPS4B-201ENST00000238497 A0A1W2PRE2 83 aa6.75□□□□□ -1.33
VPS4B-201ENST00000238497 ZNF785A8K8V0 405 aa6.75□□□□□ -1.33
VPS4B-201ENST00000238497 IGKV1-17P01599 117 aa6.75□□□□□ -1.33
VPS4B-201ENST00000238497 CLEC3BP05452 202 aa6.75□□□□□ -1.33
VPS4B-201ENST00000238497 CSN3P07498 182 aa6.75□□□□□ -1.33
VPS4B-201ENST00000238497 SMIM6P0DI80 62 aa6.75□□□□□ -1.33
VPS4B-201ENST00000238497 MFAP4P55083 255 aa6.75□□□□□ -1.33
VPS4B-201ENST00000238497 KRTDAPP60985 99 aa6.75□□□□□ -1.33
VPS4B-201ENST00000238497 S100A12P80511 92 aa6.75□□□□□ -1.33
VPS4B-201ENST00000238497 ZNF329Q86UD4 541 aa6.75□□□□□ -1.33
VPS4B-201ENST00000238497 FAM110DQ8TAY7 271 aaPredicted RBP6.75□□□□□ -1.33
VPS4B-201ENST00000238497 RNF125Q96EQ8 232 aa6.75□□□□□ -1.33
VPS4B-201ENST00000238497 TXNDC17Q9BRA2 123 aa6.75□□□□□ -1.33
VPS4B-201ENST00000238497 NPFFR1Q9GZQ6 430 aa6.75□□□□□ -1.33
VPS4B-201ENST00000238497 C21orf62Q9NYP8 219 aa6.75□□□□□ -1.33
VPS4B-201ENST00000238497 AMBPP02760 352 aa6.75□□□□□ -1.33
VPS4B-201ENST00000238497 USF2Q15853 346 aaPredicted RBP6.75□□□□□ -1.33
VPS4B-201ENST00000238497 FAM19A2Q8N3H0 131 aa6.75□□□□□ -1.33
VPS4B-201ENST00000238497 NUDT10Q8NFP7 164 aa6.75□□□□□ -1.33
VPS4B-201ENST00000238497 NUDT11Q96G61 164 aa6.75□□□□□ -1.33
VPS4B-201ENST00000238497 RNF2Q99496 336 aa6.75□□□□□ -1.33
VPS4B-201ENST00000238497 PRDM13Q9H4Q3 707 aa6.75□□□□□ -1.33
VPS4B-201ENST00000238497 K7EIM0 57 aa6.75□□□□□ -1.33
VPS4B-201ENST00000238497 SRIP30626 198 aa6.75□□□□□ -1.33
VPS4B-201ENST00000238497 ATP5IP56385 69 aaPredicted RBP6.75□□□□□ -1.33
VPS4B-201ENST00000238497 C15orf32Q32M92 178 aa6.75□□□□□ -1.33
VPS4B-201ENST00000238497 FAM71F2Q6NXP2 309 aa6.75□□□□□ -1.33
VPS4B-201ENST00000238497 BPIFA4PQ86YQ2 179 aa6.75□□□□□ -1.33
VPS4B-201ENST00000238497 TMEM18Q96B42 140 aa6.75□□□□□ -1.33
VPS4B-201ENST00000238497 HIGD1CA8MV81 97 aa6.74□□□□□ -1.33
VPS4B-201ENST00000238497 ATP6V0E1O15342 81 aa6.74□□□□□ -1.33
VPS4B-201ENST00000238497 GGCTO75223 188 aaKnown RBP6.74□□□□□ -1.33
VPS4B-201ENST00000238497 P01737 135 aa6.74□□□□□ -1.33
VPS4B-201ENST00000238497 HLA-DMBP28068 263 aa6.74□□□□□ -1.33
VPS4B-201ENST00000238497 RHOGP84095 191 aa6.74□□□□□ -1.33
VPS4B-201ENST00000238497 IQCJQ1A5X6 159 aa6.74□□□□□ -1.33
VPS4B-201ENST00000238497 KHDC1LQ5JSQ8 128 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms