RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 TMEM213A2RRL7 107 aa9.8□□□□□ -0.84
NUP88-201ENST00000225696 COX8AP10176 69 aa9.8□□□□□ -0.84
NUP88-201ENST00000225696 HIST1H1AQ02539 215 aaPredicted RBP9.8□□□□□ -0.84
NUP88-201ENST00000225696 PPP1R27Q86WC6 154 aa9.8□□□□□ -0.84
NUP88-201ENST00000225696 C8orf31Q8N9H6 132 aa9.8□□□□□ -0.84
NUP88-201ENST00000225696 NAA38Q9BRA0 125 aaKnown RBP9.8□□□□□ -0.84
NUP88-201ENST00000225696 ARHGAP32A7KAX9 2087 aa9.79□□□□□ -0.84
NUP88-201ENST00000225696 RIF1Q5UIP0 2472 aaKnown RBP9.79□□□□□ -0.84
NUP88-201ENST00000225696 TRBV19A0A075B6N1 114 aa9.79□□□□□ -0.84
NUP88-201ENST00000225696 FGF6P10767 208 aa9.79□□□□□ -0.84
NUP88-201ENST00000225696 UQCRFS1P47985 274 aa9.79□□□□□ -0.84
NUP88-201ENST00000225696 SIGLEC15Q6ZMC9 328 aa9.79□□□□□ -0.84
NUP88-201ENST00000225696 OR8A1Q8NGG7 326 aa9.79□□□□□ -0.84
NUP88-201ENST00000225696 ZFHX3Q15911 3703 aa9.79□□□□□ -0.84
NUP88-201ENST00000225696 IGHV1-3A0A0C4DH29 117 aa9.78□□□□□ -0.84
NUP88-201ENST00000225696 A0A0G2JNJ9 132 aa9.78□□□□□ -0.84
NUP88-201ENST00000225696 LYNX1G3V0Z9 82 aa9.78□□□□□ -0.84
NUP88-201ENST00000225696 CD5LO43866 347 aa9.78□□□□□ -0.84
NUP88-201ENST00000225696 LYNX1P0DP58 116 aa9.78□□□□□ -0.84
NUP88-201ENST00000225696 KLF17Q5JT82 389 aaPredicted RBP9.78□□□□□ -0.84
NUP88-201ENST00000225696 PRSS3P2Q8NHM4 247 aa9.78□□□□□ -0.84
NUP88-201ENST00000225696 MS4A6AQ9H2W1 248 aa9.78□□□□□ -0.84
NUP88-201ENST00000225696 NGBQ9NPG2 151 aa9.78□□□□□ -0.84
NUP88-201ENST00000225696 TMEM14CQ9P0S9 112 aa9.78□□□□□ -0.84
NUP88-201ENST00000225696 Q9UFV3 132 aa9.78□□□□□ -0.84
NUP88-201ENST00000225696 SH3BGRL2Q9UJC5 107 aa9.78□□□□□ -0.84
NUP88-201ENST00000225696 PSG8Q9UQ74 426 aa9.78□□□□□ -0.84
NUP88-201ENST00000225696 GAGE12BA1L429 117 aa9.78□□□□□ -0.84
NUP88-201ENST00000225696 C7orf71A4D174 169 aa9.78□□□□□ -0.84
NUP88-201ENST00000225696 D6R8Y8 96 aa9.78□□□□□ -0.84
NUP88-201ENST00000225696 RASL11BQ9BPW5 248 aa9.78□□□□□ -0.84
NUP88-201ENST00000225696 INSIG2Q9Y5U4 225 aa9.78□□□□□ -0.84
NUP88-201ENST00000225696 SERTM2A0A1B0GWG4 89 aa9.77□□□□□ -0.85
NUP88-201ENST00000225696 IGLV1-47P01700 117 aa9.77□□□□□ -0.85
NUP88-201ENST00000225696 FA2HQ7L5A8 372 aa9.77□□□□□ -0.85
NUP88-201ENST00000225696 AMN1Q8IY45 258 aa9.77□□□□□ -0.85
NUP88-201ENST00000225696 SIGLEC8Q9NYZ4 499 aa9.77□□□□□ -0.85
NUP88-201ENST00000225696 ABCA4P78363 2273 aa9.77□□□□□ -0.85
NUP88-201ENST00000225696 C16orf97H3BN30 126 aa9.77□□□□□ -0.85
NUP88-201ENST00000225696 K7EIM0 57 aa9.77□□□□□ -0.85
NUP88-201ENST00000225696 SAP30O75446 220 aa9.77□□□□□ -0.85
NUP88-201ENST00000225696 PPBPP02775 128 aa9.77□□□□□ -0.85
NUP88-201ENST00000225696 COX7A1P24310 79 aa9.77□□□□□ -0.85
NUP88-201ENST00000225696 S100A7P31151 101 aa9.77□□□□□ -0.85
NUP88-201ENST00000225696 RBPJQ06330 500 aa9.77□□□□□ -0.85
NUP88-201ENST00000225696 PSG3Q16557 428 aa9.77□□□□□ -0.85
NUP88-201ENST00000225696 Q6ZS92 163 aa9.77□□□□□ -0.85
NUP88-201ENST00000225696 RNASE6Q93091 150 aaKnown RBP9.77□□□□□ -0.85
NUP88-201ENST00000225696 JMJD8Q96S16 334 aa9.77□□□□□ -0.85
NUP88-201ENST00000225696 VPS25Q9BRG1 176 aa9.77□□□□□ -0.85
NUP88-201ENST00000225696 RABAC1Q9UI14 185 aa9.77□□□□□ -0.85
NUP88-201ENST00000225696 WNK2Q9Y3S1 2297 aa9.76□□□□□ -0.85
NUP88-201ENST00000225696 SMKR1H3BMG3 65 aa9.76□□□□□ -0.85
NUP88-201ENST00000225696 RIGQ13278 110 aa9.76□□□□□ -0.85
NUP88-201ENST00000225696 IGF2-ASQ6U949 168 aa9.76□□□□□ -0.85
NUP88-201ENST00000225696 LYZL1Q6UWQ5 148 aa9.76□□□□□ -0.85
NUP88-201ENST00000225696 PRSS57Q6UWY2 283 aa9.76□□□□□ -0.85
NUP88-201ENST00000225696 BPIFA4PQ86YQ2 179 aa9.76□□□□□ -0.85
NUP88-201ENST00000225696 TMEM75Q8N9X5 138 aa9.76□□□□□ -0.85
NUP88-201ENST00000225696 OR10AG1Q8NH19 301 aa9.76□□□□□ -0.85
NUP88-201ENST00000225696 SHANK2-AS3Q9BTD1 123 aa9.76□□□□□ -0.85
NUP88-201ENST00000225696 HILPDAQ9Y5L2 63 aa9.76□□□□□ -0.85
NUP88-201ENST00000225696 BUB1B-PAK6H3BSN5 160 aa9.75□□□□□ -0.85
NUP88-201ENST00000225696 MRPS12O15235 138 aaKnown RBP9.75□□□□□ -0.85
NUP88-201ENST00000225696 TMEM97Q5BJF2 176 aa9.75□□□□□ -0.85
NUP88-201ENST00000225696 WFDC3Q8IUB2 231 aa9.75□□□□□ -0.85
NUP88-201ENST00000225696 ZNF491Q8N8L2 437 aa9.75□□□□□ -0.85
NUP88-201ENST00000225696 ZNF414Q96IQ9 312 aa9.75□□□□□ -0.85
NUP88-201ENST00000225696 CACNA1BQ00975 2339 aa9.75□□□□□ -0.85
NUP88-201ENST00000225696 H3BRN7 92 aa9.75□□□□□ -0.85
NUP88-201ENST00000225696 IL4P05112 153 aa9.75□□□□□ -0.85
NUP88-201ENST00000225696 FCGR2BP31994 310 aaPredicted RBP9.75□□□□□ -0.85
NUP88-201ENST00000225696 COTL1Q14019 142 aa9.75□□□□□ -0.85
NUP88-201ENST00000225696 IGFL3Q6UXB1 125 aa9.75□□□□□ -0.85
NUP88-201ENST00000225696 GATD1Q8NB37 220 aa9.75□□□□□ -0.85
NUP88-201ENST00000225696 FAM57AQ8TBR7 257 aa9.75□□□□□ -0.85
NUP88-201ENST00000225696 ZFHX2Q9C0A1 2572 aaPredicted RBP9.74□□□□□ -0.85
NUP88-201ENST00000225696 GAS8-AS1O95177 125 aa9.74□□□□□ -0.85
NUP88-201ENST00000225696 CSN1S1P47710 185 aa9.74□□□□□ -0.85
NUP88-201ENST00000225696 CACNG7P62955 275 aa9.74□□□□□ -0.85
NUP88-201ENST00000225696 PAX2Q02962 417 aa9.74□□□□□ -0.85
NUP88-201ENST00000225696 KAAG1Q9UBP8 84 aa9.74□□□□□ -0.85
NUP88-201ENST00000225696 TRBV6-1A0A0K0K1D8 114 aa9.74□□□□□ -0.85
NUP88-201ENST00000225696 E7EQL1 145 aa9.74□□□□□ -0.85
NUP88-201ENST00000225696 APOBEC3AP31941 199 aaPredicted RBP9.74□□□□□ -0.85
NUP88-201ENST00000225696 PLGLAQ15195 96 aa9.74□□□□□ -0.85
NUP88-201ENST00000225696 IGFL4Q6B9Z1 124 aa9.74□□□□□ -0.85
NUP88-201ENST00000225696 ZNF575Q86XF7 245 aa9.74□□□□□ -0.85
NUP88-201ENST00000225696 PCP2Q8IVA1 136 aa9.74□□□□□ -0.85
NUP88-201ENST00000225696 SCNM1Q9BWG6 230 aa9.74□□□□□ -0.85
NUP88-201ENST00000225696 PEF1Q9UBV8 284 aaKnown RBP9.74□□□□□ -0.85
NUP88-201ENST00000225696 MED13LQ71F56 2210 aa9.73□□□□□ -0.85
NUP88-201ENST00000225696 NHLH1Q02575 133 aa9.73□□□□□ -0.85
NUP88-201ENST00000225696 PAX8Q06710 450 aa9.73□□□□□ -0.85
NUP88-201ENST00000225696 ZNF493Q6ZR52 646 aa9.73□□□□□ -0.85
NUP88-201ENST00000225696 RNF125Q96EQ8 232 aa9.73□□□□□ -0.85
NUP88-201ENST00000225696 PRELID3AQ96N28 172 aa9.73□□□□□ -0.85
NUP88-201ENST00000225696 THYN1Q9P016 225 aa9.73□□□□□ -0.85
NUP88-201ENST00000225696 IGKV2-40A0A087WW87 121 aaPredicted RBP9.73□□□□□ -0.85
NUP88-201ENST00000225696 CNIH1O95406 144 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms