RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 TEX261Q6UWH6 196 aa20.4■□□□□ 0.86
CHMP4B-201ENST00000217402 K7EQG2 157 aa20.39■□□□□ 0.86
CHMP4B-201ENST00000217402 HIST1H1EP10412 219 aaKnown RBP20.39■□□□□ 0.86
CHMP4B-201ENST00000217402 FAM24BQ8N5W8 94 aa20.39■□□□□ 0.86
CHMP4B-201ENST00000217402 SFT2D1Q8WV19 159 aa20.39■□□□□ 0.86
CHMP4B-201ENST00000217402 A0A1B0GV50 99 aa20.38■□□□□ 0.85
CHMP4B-201ENST00000217402 ZNF705EA8MWA4 302 aaPredicted RBP20.38■□□□□ 0.85
CHMP4B-201ENST00000217402 CXorf1O96002 111 aa20.38■□□□□ 0.85
CHMP4B-201ENST00000217402 LRRC20Q8TCA0 184 aa20.38■□□□□ 0.85
CHMP4B-201ENST00000217402 SLC17A3O00476 420 aa20.38■□□□□ 0.85
CHMP4B-201ENST00000217402 H2AFB1P0C5Y9 115 aa20.38■□□□□ 0.85
CHMP4B-201ENST00000217402 MEOX2P50222 304 aa20.38■□□□□ 0.85
CHMP4B-201ENST00000217402 BEAN1Q3B7T3 259 aa20.38■□□□□ 0.85
CHMP4B-201ENST00000217402 C16orf92Q96LL3 132 aa20.38■□□□□ 0.85
CHMP4B-201ENST00000217402 PRR25Q96S07 402 aa20.38■□□□□ 0.85
CHMP4B-201ENST00000217402 TRAV2A0A0B4J234 112 aa20.37■□□□□ 0.85
CHMP4B-201ENST00000217402 SOCS3O14543 225 aa20.37■□□□□ 0.85
CHMP4B-201ENST00000217402 NBEAP1P0C6P0 100 aa20.37■□□□□ 0.85
CHMP4B-201ENST00000217402 GCHFRP30047 84 aa20.37■□□□□ 0.85
CHMP4B-201ENST00000217402 IGFL4Q6B9Z1 124 aa20.37■□□□□ 0.85
CHMP4B-201ENST00000217402 ZNF680Q8NEM1 530 aa20.37■□□□□ 0.85
CHMP4B-201ENST00000217402 TRBV19A0A075B6N1 114 aa20.36■□□□□ 0.85
CHMP4B-201ENST00000217402 ZNF688P0C7X2 276 aa20.36■□□□□ 0.85
CHMP4B-201ENST00000217402 GUK1Q16774 197 aa20.36■□□□□ 0.85
CHMP4B-201ENST00000217402 TMPRSS5Q9H3S3 457 aa20.36■□□□□ 0.85
CHMP4B-201ENST00000217402 CD7P09564 240 aa20.35■□□□□ 0.85
CHMP4B-201ENST00000217402 CD81P60033 236 aa20.35■□□□□ 0.85
CHMP4B-201ENST00000217402 MBD3L1Q8WWY6 194 aa20.35■□□□□ 0.85
CHMP4B-201ENST00000217402 ZMAT5Q9UDW3 170 aaKnown RBP20.35■□□□□ 0.85
CHMP4B-201ENST00000217402 UBQLN2Q9UHD9 624 aa20.35■□□□□ 0.85
CHMP4B-201ENST00000217402 NOTCH1P46531 2555 aa20.35■□□□□ 0.85
CHMP4B-201ENST00000217402 GTSCR1Q86UQ5 136 aa20.35■□□□□ 0.85
CHMP4B-201ENST00000217402 SAT2Q96F10 170 aaPredicted RBP20.35■□□□□ 0.85
CHMP4B-201ENST00000217402 IFNA7P01567 189 aa20.34■□□□□ 0.85
CHMP4B-201ENST00000217402 RNF182Q8N6D2 247 aa20.34■□□□□ 0.85
CHMP4B-201ENST00000217402 SORL1Q92673 2214 aa20.34■□□□□ 0.85
CHMP4B-201ENST00000217402 TRAV8-2A0A0B4J237 113 aa20.33■□□□□ 0.84
CHMP4B-201ENST00000217402 ISLRO14498 428 aa20.33■□□□□ 0.84
CHMP4B-201ENST00000217402 NDUFB4O95168 129 aa20.33■□□□□ 0.84
CHMP4B-201ENST00000217402 ID1P41134 155 aa20.33■□□□□ 0.84
CHMP4B-201ENST00000217402 SAMD13Q5VXD3 122 aa20.33■□□□□ 0.84
CHMP4B-201ENST00000217402 LINC00052Q96N35 136 aa20.33■□□□□ 0.84
CHMP4B-201ENST00000217402 ZNF331Q9NQX6 463 aaPredicted RBP20.33■□□□□ 0.84
CHMP4B-201ENST00000217402 NBEAL1Q6ZS30 2694 aa20.32■□□□□ 0.84
CHMP4B-201ENST00000217402 HLA-DMBP28068 263 aa20.32■□□□□ 0.84
CHMP4B-201ENST00000217402 PSMB3P49720 205 aa20.32■□□□□ 0.84
CHMP4B-201ENST00000217402 SNRPD3P62318 126 aaKnown RBP20.32■□□□□ 0.84
CHMP4B-201ENST00000217402 ODF3L2Q3SX64 289 aa20.32■□□□□ 0.84
CHMP4B-201ENST00000217402 PSMG4Q5JS54 123 aa20.32■□□□□ 0.84
CHMP4B-201ENST00000217402 KPRPQ5T749 579 aaPredicted RBP20.32■□□□□ 0.84
CHMP4B-201ENST00000217402 SLC50A1Q9BRV3 221 aa20.32■□□□□ 0.84
CHMP4B-201ENST00000217402 MAP6D1Q9H9H5 199 aa20.32■□□□□ 0.84
CHMP4B-201ENST00000217402 PDE6HQ13956 83 aa20.31■□□□□ 0.84
CHMP4B-201ENST00000217402 TMEM167BQ9NRX6 74 aa20.31■□□□□ 0.84
CHMP4B-201ENST00000217402 RANP62826 216 aaKnown RBP20.31■□□□□ 0.84
CHMP4B-201ENST00000217402 C20orf173Q96LM9 149 aa20.31■□□□□ 0.84
CHMP4B-201ENST00000217402 WFDC10AQ9H1F0 79 aa20.31■□□□□ 0.84
CHMP4B-201ENST00000217402 PRB2P02812 416 aaPredicted RBP20.3■□□□□ 0.84
CHMP4B-201ENST00000217402 DEFB131AP59861 70 aa20.3■□□□□ 0.84
CHMP4B-201ENST00000217402 EXOC3-AS1Q8N2X6 119 aa20.3■□□□□ 0.84
CHMP4B-201ENST00000217402 PCNPQ8WW12 178 aaKnown RBP20.3■□□□□ 0.84
CHMP4B-201ENST00000217402 OR11H12B2RN74 326 aa20.29■□□□□ 0.84
CHMP4B-201ENST00000217402 ZNF253O75346 499 aa20.29■□□□□ 0.84
CHMP4B-201ENST00000217402 PRB4P10163 310 aaPredicted RBP20.29■□□□□ 0.84
CHMP4B-201ENST00000217402 BLOC1S1P78537 153 aa20.28■□□□□ 0.84
CHMP4B-201ENST00000217402 PSG9Q00887 426 aa20.28■□□□□ 0.84
CHMP4B-201ENST00000217402 APRG1Q8IVJ8 170 aa20.28■□□□□ 0.84
CHMP4B-201ENST00000217402 SUN5Q8TC36 379 aa20.28■□□□□ 0.84
CHMP4B-201ENST00000217402 UBE2G2P60604 165 aa20.27■□□□□ 0.84
CHMP4B-201ENST00000217402 IFITM2Q01629 132 aa20.27■□□□□ 0.84
CHMP4B-201ENST00000217402 ZNF124Q15973 351 aa20.27■□□□□ 0.84
CHMP4B-201ENST00000217402 Q9H3A6 140 aa20.27■□□□□ 0.84
CHMP4B-201ENST00000217402 TRAV1-1A0A0B4J248 108 aa20.27■□□□□ 0.83
CHMP4B-201ENST00000217402 TEX46H3BTG2 121 aa20.27■□□□□ 0.83
CHMP4B-201ENST00000217402 HBE1P02100 147 aa20.27■□□□□ 0.83
CHMP4B-201ENST00000217402 CCL20P78556 96 aa20.27■□□□□ 0.83
CHMP4B-201ENST00000217402 ICAM4Q14773 271 aa20.27■□□□□ 0.83
CHMP4B-201ENST00000217402 AAMDCQ9H7C9 122 aa20.27■□□□□ 0.83
CHMP4B-201ENST00000217402 C19orf73Q9NVV2 129 aa20.27■□□□□ 0.83
CHMP4B-201ENST00000217402 DEFB1P60022 68 aa20.26■□□□□ 0.83
CHMP4B-201ENST00000217402 ZNF738Q8NE65 137 aa20.26■□□□□ 0.83
CHMP4B-201ENST00000217402 PSG3Q16557 428 aa20.25■□□□□ 0.83
CHMP4B-201ENST00000217402 Q8N1Y9 231 aa20.25■□□□□ 0.83
CHMP4B-201ENST00000217402 M0R3E3 92 aa20.24■□□□□ 0.83
CHMP4B-201ENST00000217402 CMC4P56277 68 aaPredicted RBP20.24■□□□□ 0.83
CHMP4B-201ENST00000217402 DEFB125Q8N687 156 aa20.24■□□□□ 0.83
CHMP4B-201ENST00000217402 AURKAIP1Q9NWT8 199 aaPredicted RBP20.24■□□□□ 0.83
CHMP4B-201ENST00000217402 YTHDF2Q9Y5A9 579 aaKnown RBP20.24■□□□□ 0.83
CHMP4B-201ENST00000217402 ZNF705FA8MVS1 300 aaPredicted RBP20.24■□□□□ 0.83
CHMP4B-201ENST00000217402 LYPD1Q8N2G4 141 aa20.23■□□□□ 0.83
CHMP4B-201ENST00000217402 FAM110AQ9BQ89 295 aa20.23■□□□□ 0.83
CHMP4B-201ENST00000217402 GNG13Q9P2W3 67 aa20.23■□□□□ 0.83
CHMP4B-201ENST00000217402 DNAH3Q8TD57 4116 aa20.22■□□□□ 0.83
CHMP4B-201ENST00000217402 F6UB75 175 aa20.22■□□□□ 0.83
CHMP4B-201ENST00000217402 OTORQ9NRC9 128 aa20.22■□□□□ 0.83
CHMP4B-201ENST00000217402 PGPA6NDG6 321 aa20.21■□□□□ 0.83
CHMP4B-201ENST00000217402 KNCNA6PVL3 124 aa20.21■□□□□ 0.83
CHMP4B-201ENST00000217402 GGTLC3B5MD39 225 aa20.21■□□□□ 0.83
CHMP4B-201ENST00000217402 ZNF767PQ75MW2 155 aa20.21■□□□□ 0.83
CHMP4B-201ENST00000217402 RPUSD4Q96CM3 377 aaKnown RBP20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms