RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 A0A0J9YX75 114 aa7.38□□□□□ -1.23
SCN1A-222ENST00000642141 CCSO14618 274 aa7.38□□□□□ -1.23
SCN1A-222ENST00000642141 HTN3P15516 51 aa7.38□□□□□ -1.23
SCN1A-222ENST00000642141 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.38□□□□□ -1.23
SCN1A-222ENST00000642141 ZNF705AQ6ZN79 300 aaPredicted RBP7.38□□□□□ -1.23
SCN1A-222ENST00000642141 SMIM8Q96KF7 97 aa7.38□□□□□ -1.23
SCN1A-222ENST00000642141 UHRF2Q96PU4 802 aa7.38□□□□□ -1.23
SCN1A-222ENST00000642141 C7orf50Q9BRJ6 194 aaKnown RBP7.38□□□□□ -1.23
SCN1A-222ENST00000642141 RPRMQ9NS64 109 aa7.38□□□□□ -1.23
SCN1A-222ENST00000642141 DNAH10Q8IVF4 4471 aa7.37□□□□□ -1.23
SCN1A-222ENST00000642141 TRAV6A0A075B6T7 132 aa7.37□□□□□ -1.23
SCN1A-222ENST00000642141 TRAV8-2A0A0B4J237 113 aa7.37□□□□□ -1.23
SCN1A-222ENST00000642141 PMS2P5A8MQ11 134 aa7.37□□□□□ -1.23
SCN1A-222ENST00000642141 ZNF705FA8MVS1 300 aaPredicted RBP7.37□□□□□ -1.23
SCN1A-222ENST00000642141 FAM25EA8MYX2 175 aa7.37□□□□□ -1.23
SCN1A-222ENST00000642141 PLA2G10O15496 165 aa7.37□□□□□ -1.23
SCN1A-222ENST00000642141 HYPMO75409 117 aa7.37□□□□□ -1.23
SCN1A-222ENST00000642141 CFDP00746 253 aaPredicted RBP7.37□□□□□ -1.23
SCN1A-222ENST00000642141 LINC00869P0C866 280 aa7.37□□□□□ -1.23
SCN1A-222ENST00000642141 SLC38A11Q08AI6 406 aa7.37□□□□□ -1.23
SCN1A-222ENST00000642141 TMEM144Q7Z5S9 345 aa7.37□□□□□ -1.23
SCN1A-222ENST00000642141 C1orf158Q8N1D5 194 aa7.37□□□□□ -1.23
SCN1A-222ENST00000642141 S100ZQ8WXG8 99 aa7.37□□□□□ -1.23
SCN1A-222ENST00000642141 SLC25A39Q9BZJ4 359 aaPredicted RBP7.37□□□□□ -1.23
SCN1A-222ENST00000642141 ARL6Q9H0F7 186 aa7.37□□□□□ -1.23
SCN1A-222ENST00000642141 HIGD1AQ9Y241 93 aa7.37□□□□□ -1.23
SCN1A-222ENST00000642141 M0R2Z0 102 aa7.36□□□□□ -1.23
SCN1A-222ENST00000642141 MBPP02686 304 aaPredicted RBP7.36□□□□□ -1.23
SCN1A-222ENST00000642141 SPART-AS1P0CW21 52 aa7.36□□□□□ -1.23
SCN1A-222ENST00000642141 MEOX2P50222 304 aa7.36□□□□□ -1.23
SCN1A-222ENST00000642141 CNN1P51911 297 aaKnown RBP7.36□□□□□ -1.23
SCN1A-222ENST00000642141 TCTAP57738 103 aa7.36□□□□□ -1.23
SCN1A-222ENST00000642141 RAP2BP61225 183 aa7.36□□□□□ -1.23
SCN1A-222ENST00000642141 ARL16Q0P5N6 197 aa7.36□□□□□ -1.23
SCN1A-222ENST00000642141 SPINK13Q1W4C9 94 aa7.36□□□□□ -1.23
SCN1A-222ENST00000642141 FAM222AQ5U5X8 452 aa7.36□□□□□ -1.23
SCN1A-222ENST00000642141 ZBTB8BQ8NAP8 495 aaPredicted RBP7.36□□□□□ -1.23
SCN1A-222ENST00000642141 ZNF738Q8NE65 137 aa7.36□□□□□ -1.23
SCN1A-222ENST00000642141 SHANK2-AS3Q9BTD1 123 aa7.36□□□□□ -1.23
SCN1A-222ENST00000642141 TMEM208Q9BTX3 173 aa7.36□□□□□ -1.23
SCN1A-222ENST00000642141 C20orf85Q9H1P6 137 aa7.36□□□□□ -1.23
SCN1A-222ENST00000642141 GOLT1BQ9Y3E0 138 aa7.36□□□□□ -1.23
SCN1A-222ENST00000642141 RFNGQ9Y644 331 aa7.36□□□□□ -1.23
SCN1A-222ENST00000642141 TRAV12-2A0A075B6T6 113 aa7.35□□□□□ -1.23
SCN1A-222ENST00000642141 ZNF705GA8MUZ8 300 aaPredicted RBP7.35□□□□□ -1.23
SCN1A-222ENST00000642141 H3BRN7 92 aa7.35□□□□□ -1.23
SCN1A-222ENST00000642141 H3BTX0 84 aa7.35□□□□□ -1.23
SCN1A-222ENST00000642141 M0R2N4 97 aa7.35□□□□□ -1.23
SCN1A-222ENST00000642141 HBE1P02100 147 aa7.35□□□□□ -1.23
SCN1A-222ENST00000642141 DLK1P80370 383 aa7.35□□□□□ -1.23
SCN1A-222ENST00000642141 SPATA31B1PQ5VZV4 182 aa7.35□□□□□ -1.23
SCN1A-222ENST00000642141 TMEM14EPQ6UXP3 125 aa7.35□□□□□ -1.23
SCN1A-222ENST00000642141 PATE2Q6UY27 113 aa7.35□□□□□ -1.23
SCN1A-222ENST00000642141 OR10P1Q8NGE3 313 aa7.35□□□□□ -1.23
SCN1A-222ENST00000642141 LRRC20Q8TCA0 184 aa7.35□□□□□ -1.23
SCN1A-222ENST00000642141 MITD1Q8WV92 249 aa7.35□□□□□ -1.23
SCN1A-222ENST00000642141 CLUHP3Q96NS8 147 aa7.35□□□□□ -1.23
SCN1A-222ENST00000642141 SEC22CQ9BRL7 303 aa7.35□□□□□ -1.23
SCN1A-222ENST00000642141 RNF126Q9BV68 326 aa7.35□□□□□ -1.23
SCN1A-222ENST00000642141 MGAT4CQ9UBM8 478 aa7.35□□□□□ -1.23
SCN1A-222ENST00000642141 DKK2Q9UBU2 259 aa7.35□□□□□ -1.23
SCN1A-222ENST00000642141 SLC45A2Q9UMX9 530 aa7.35□□□□□ -1.23
SCN1A-222ENST00000642141 RCL1Q9Y2P8 373 aaKnown RBP7.35□□□□□ -1.23
SCN1A-222ENST00000642141 LSM5Q9Y4Y9 91 aaKnown RBP7.35□□□□□ -1.23
SCN1A-222ENST00000642141 LOC102723971A0A1B0GUV8 181 aa7.34□□□□□ -1.23
SCN1A-222ENST00000642141 C7orf66A4D0T2 115 aa7.34□□□□□ -1.23
SCN1A-222ENST00000642141 C5orf51A6NDU8 294 aa7.34□□□□□ -1.23
SCN1A-222ENST00000642141 SMIM9A6NGZ8 99 aa7.34□□□□□ -1.23
SCN1A-222ENST00000642141 L7N2F9 121 aa7.34□□□□□ -1.23
SCN1A-222ENST00000642141 GOSR2O14653 212 aa7.34□□□□□ -1.23
SCN1A-222ENST00000642141 LYRM1O43325 122 aa7.34□□□□□ -1.23
SCN1A-222ENST00000642141 PFDN1O60925 122 aa7.34□□□□□ -1.23
SCN1A-222ENST00000642141 TCRBP04435 133 aa7.34□□□□□ -1.23
SCN1A-222ENST00000642141 HTN1P15515 57 aa7.34□□□□□ -1.23
SCN1A-222ENST00000642141 BCAP31P51572 246 aa7.34□□□□□ -1.23
SCN1A-222ENST00000642141 RHOBP62745 196 aa7.34□□□□□ -1.23
SCN1A-222ENST00000642141 VAMP2P63027 116 aa7.34□□□□□ -1.23
SCN1A-222ENST00000642141 ZNF846Q147U1 533 aa7.34□□□□□ -1.23
SCN1A-222ENST00000642141 SAMD13Q5VXD3 122 aa7.34□□□□□ -1.23
SCN1A-222ENST00000642141 AMTNQ6UX39 209 aa7.34□□□□□ -1.23
SCN1A-222ENST00000642141 BAP18Q8IXM2 172 aa7.34□□□□□ -1.23
SCN1A-222ENST00000642141 OR11H7Q8NGC8 314 aa7.34□□□□□ -1.23
SCN1A-222ENST00000642141 FAM210AQ96ND0 272 aa7.34□□□□□ -1.23
SCN1A-222ENST00000642141 GPR82Q96P67 336 aa7.34□□□□□ -1.23
SCN1A-222ENST00000642141 NEU1Q99519 415 aa7.34□□□□□ -1.23
SCN1A-222ENST00000642141 NIPSNAP3BQ9BS92 247 aa7.34□□□□□ -1.23
SCN1A-222ENST00000642141 NDUFAF3Q9BU61 184 aa7.34□□□□□ -1.23
SCN1A-222ENST00000642141 NPVFQ9HCQ7 196 aa7.34□□□□□ -1.23
SCN1A-222ENST00000642141 NUDT15Q9NV35 164 aa7.34□□□□□ -1.23
SCN1A-222ENST00000642141 YTHDF2Q9Y5A9 579 aaKnown RBP7.34□□□□□ -1.23
SCN1A-222ENST00000642141 DNAH6Q9C0G6 4158 aa7.33□□□□□ -1.24
SCN1A-222ENST00000642141 TMEM189A5PLL7 270 aa7.33□□□□□ -1.24
SCN1A-222ENST00000642141 AGPAT2O15120 278 aa7.33□□□□□ -1.24
SCN1A-222ENST00000642141 CST7O76096 145 aa7.33□□□□□ -1.24
SCN1A-222ENST00000642141 RPL7P18124 248 aaKnown RBP7.33□□□□□ -1.24
SCN1A-222ENST00000642141 S100A7P31151 101 aa7.33□□□□□ -1.24
SCN1A-222ENST00000642141 SELENOTP62341 195 aa7.33□□□□□ -1.24
SCN1A-222ENST00000642141 HIST1H1AQ02539 215 aaPredicted RBP7.33□□□□□ -1.24
SCN1A-222ENST00000642141 FCN2Q15485 313 aa7.33□□□□□ -1.24
SCN1A-222ENST00000642141 RRN3P1Q2M238 152 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms