RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 NAA50Q9GZZ1 169 aaKnown RBP10.48□□□□□ -0.73
SYNE2-228ENST00000639659 Q9H8V8 135 aa10.48□□□□□ -0.73
SYNE2-228ENST00000639659 DNAH5Q8TE73 4624 aa10.47□□□□□ -0.73
SYNE2-228ENST00000639659 A8MTW9 85 aa10.47□□□□□ -0.73
SYNE2-228ENST00000639659 B2MP61769 119 aa10.47□□□□□ -0.73
SYNE2-228ENST00000639659 PRRT1Q99946 306 aa10.47□□□□□ -0.73
SYNE2-228ENST00000639659 TMEM147Q9BVK8 224 aa10.47□□□□□ -0.73
SYNE2-228ENST00000639659 IGKV1OR2-108A0A075B7D4 117 aa10.46□□□□□ -0.73
SYNE2-228ENST00000639659 A0A0B4J2A0 478 aa10.46□□□□□ -0.73
SYNE2-228ENST00000639659 A0A0J9YY99 117 aa10.46□□□□□ -0.73
SYNE2-228ENST00000639659 PLAC8L1A1L4L8 177 aa10.46□□□□□ -0.73
SYNE2-228ENST00000639659 CBY3A6NI87 242 aa10.46□□□□□ -0.73
SYNE2-228ENST00000639659 TSPOP30536 169 aa10.46□□□□□ -0.73
SYNE2-228ENST00000639659 AKR1C1Q04828 323 aa10.46□□□□□ -0.73
SYNE2-228ENST00000639659 TTC32Q5I0X7 151 aa10.46□□□□□ -0.73
SYNE2-228ENST00000639659 GGNBP1Q5YKI7 109 aa10.46□□□□□ -0.73
SYNE2-228ENST00000639659 BPIFCQ8NFQ6 507 aa10.46□□□□□ -0.73
SYNE2-228ENST00000639659 GNPNAT1Q96EK6 184 aaPredicted RBP10.46□□□□□ -0.73
SYNE2-228ENST00000639659 C17orf77Q96MU5 243 aa10.46□□□□□ -0.73
SYNE2-228ENST00000639659 KRTAP1-5Q9BYS1 174 aa10.46□□□□□ -0.73
SYNE2-228ENST00000639659 NOP10Q9NPE3 64 aaKnown RBP10.46□□□□□ -0.73
SYNE2-228ENST00000639659 MCUBQ9NWR8 336 aa10.46□□□□□ -0.73
SYNE2-228ENST00000639659 SHPKQ9UHJ6 478 aa10.46□□□□□ -0.73
SYNE2-228ENST00000639659 HERC1Q15751 4861 aa10.46□□□□□ -0.74
SYNE2-228ENST00000639659 TRAV26-1A0A087WT03 109 aa10.45□□□□□ -0.74
SYNE2-228ENST00000639659 TRAV8-2A0A0B4J237 113 aa10.45□□□□□ -0.74
SYNE2-228ENST00000639659 ANXA3P12429 323 aa10.45□□□□□ -0.74
SYNE2-228ENST00000639659 SSBP1Q04837 148 aaKnown RBP10.45□□□□□ -0.74
SYNE2-228ENST00000639659 IL18Q14116 193 aa10.45□□□□□ -0.74
SYNE2-228ENST00000639659 THAP8Q8NA92 274 aa10.45□□□□□ -0.74
SYNE2-228ENST00000639659 SMIM4Q8WVI0 70 aa10.45□□□□□ -0.74
SYNE2-228ENST00000639659 C16orf74Q96GX8 76 aa10.45□□□□□ -0.74
SYNE2-228ENST00000639659 MIXL1Q9H2W2 232 aa10.45□□□□□ -0.74
SYNE2-228ENST00000639659 TIMM8BQ9Y5J9 83 aaPredicted RBP10.45□□□□□ -0.74
SYNE2-228ENST00000639659 SMCO3A2RU48 225 aa10.44□□□□□ -0.74
SYNE2-228ENST00000639659 EPM2AB3EWF7 344 aa10.44□□□□□ -0.74
SYNE2-228ENST00000639659 ATP5IP56385 69 aaPredicted RBP10.44□□□□□ -0.74
SYNE2-228ENST00000639659 MRPS10P82664 201 aaKnown RBP10.44□□□□□ -0.74
SYNE2-228ENST00000639659 TMEM144Q7Z5S9 345 aa10.44□□□□□ -0.74
SYNE2-228ENST00000639659 LRRC20Q8TCA0 184 aa10.44□□□□□ -0.74
SYNE2-228ENST00000639659 GPR82Q96P67 336 aa10.44□□□□□ -0.74
SYNE2-228ENST00000639659 ZNF586Q9NXT0 402 aa10.44□□□□□ -0.74
SYNE2-228ENST00000639659 WRBO00258 174 aa10.43□□□□□ -0.74
SYNE2-228ENST00000639659 CFDP00746 253 aaPredicted RBP10.43□□□□□ -0.74
SYNE2-228ENST00000639659 S100A7P31151 101 aa10.43□□□□□ -0.74
SYNE2-228ENST00000639659 FUSP35637 526 aaKnown RBP eCLIP10.43□□□□□ -0.74
SYNE2-228ENST00000639659 TAS2R60P59551 318 aa10.43□□□□□ -0.74
SYNE2-228ENST00000639659 SRPXP78539 464 aa10.43□□□□□ -0.74
SYNE2-228ENST00000639659 TMEM182Q6ZP80 229 aaPredicted RBP10.43□□□□□ -0.74
SYNE2-228ENST00000639659 TMEM256Q8N2U0 113 aa10.43□□□□□ -0.74
SYNE2-228ENST00000639659 SCGB3A2Q96PL1 93 aa10.43□□□□□ -0.74
SYNE2-228ENST00000639659 SCP2D1Q9UJQ7 156 aa10.43□□□□□ -0.74
SYNE2-228ENST00000639659 H3BP45 60 aa10.42□□□□□ -0.74
SYNE2-228ENST00000639659 CTDSP2O14595 271 aa10.42□□□□□ -0.74
SYNE2-228ENST00000639659 RAP2BP61225 183 aa10.42□□□□□ -0.74
SYNE2-228ENST00000639659 TMED4Q7Z7H5 227 aa10.42□□□□□ -0.74
SYNE2-228ENST00000639659 OR8A1Q8NGG7 326 aa10.42□□□□□ -0.74
SYNE2-228ENST00000639659 OR4D5Q8NGN0 318 aa10.42□□□□□ -0.74
SYNE2-228ENST00000639659 OR10J6PQ8NGY7 276 aa10.42□□□□□ -0.74
SYNE2-228ENST00000639659 Q9H3A6 140 aa10.42□□□□□ -0.74
SYNE2-228ENST00000639659 SLC45A2Q9UMX9 530 aa10.42□□□□□ -0.74
SYNE2-228ENST00000639659 GAGE12BA1L429 117 aa10.41□□□□□ -0.74
SYNE2-228ENST00000639659 H3BRN7 92 aa10.41□□□□□ -0.74
SYNE2-228ENST00000639659 GAGE7O76087 117 aa10.41□□□□□ -0.74
SYNE2-228ENST00000639659 OR5G3P0C626 314 aa10.41□□□□□ -0.74
SYNE2-228ENST00000639659 GAGE12FP0CL80 117 aa10.41□□□□□ -0.74
SYNE2-228ENST00000639659 GAGE12GP0CL81 117 aa10.41□□□□□ -0.74
SYNE2-228ENST00000639659 GAGE12IP0CL82 117 aa10.41□□□□□ -0.74
SYNE2-228ENST00000639659 M6PRP20645 277 aa10.41□□□□□ -0.74
SYNE2-228ENST00000639659 RPP30P78346 268 aaKnown RBP10.41□□□□□ -0.74
SYNE2-228ENST00000639659 CTF1Q16619 201 aa10.41□□□□□ -0.74
SYNE2-228ENST00000639659 SPANXN5Q5MJ07 72 aa10.41□□□□□ -0.74
SYNE2-228ENST00000639659 ACOT7LQ6ZUV0 252 aa10.41□□□□□ -0.74
SYNE2-228ENST00000639659 DIRAS2Q96HU8 199 aa10.41□□□□□ -0.74
SYNE2-228ENST00000639659 HIGD1AQ9Y241 93 aa10.41□□□□□ -0.74
SYNE2-228ENST00000639659 J3KRW8 73 aa10.4□□□□□ -0.74
SYNE2-228ENST00000639659 MED6O75586 246 aa10.4□□□□□ -0.74
SYNE2-228ENST00000639659 IL5P05113 134 aa10.4□□□□□ -0.74
SYNE2-228ENST00000639659 INAFM2P0DMQ5 153 aa10.4□□□□□ -0.74
SYNE2-228ENST00000639659 VAMP1P23763 118 aa10.4□□□□□ -0.74
SYNE2-228ENST00000639659 ESRGQ1W209 222 aa10.4□□□□□ -0.74
SYNE2-228ENST00000639659 RXFP4Q8TDU9 374 aa10.4□□□□□ -0.74
SYNE2-228ENST00000639659 TMEM263Q8WUH6 116 aaKnown RBP10.4□□□□□ -0.74
SYNE2-228ENST00000639659 PARD6GQ9BYG4 376 aaPredicted RBP10.4□□□□□ -0.74
SYNE2-228ENST00000639659 ANKRD20A5PA0PJZ0 165 aa10.39□□□□□ -0.75
SYNE2-228ENST00000639659 ZNF701M0R085 212 aaPredicted RBP10.39□□□□□ -0.75
SYNE2-228ENST00000639659 ADAP1O75689 374 aa10.39□□□□□ -0.75
SYNE2-228ENST00000639659 RLN2P04090 185 aa10.39□□□□□ -0.75
SYNE2-228ENST00000639659 SNRPCP09234 159 aaKnown RBP10.39□□□□□ -0.75
SYNE2-228ENST00000639659 RPL7P18124 248 aaKnown RBP10.39□□□□□ -0.75
SYNE2-228ENST00000639659 CXCL3P19876 107 aa10.39□□□□□ -0.75
SYNE2-228ENST00000639659 HOXA5P20719 270 aa10.39□□□□□ -0.75
SYNE2-228ENST00000639659 CDKN1BP46527 198 aa10.39□□□□□ -0.75
SYNE2-228ENST00000639659 PSG3Q16557 428 aa10.39□□□□□ -0.75
SYNE2-228ENST00000639659 CCDC190Q86UF4 302 aa10.39□□□□□ -0.75
SYNE2-228ENST00000639659 CCDC28AQ8IWP9 274 aa10.39□□□□□ -0.75
SYNE2-228ENST00000639659 RNASE8Q8TDE3 154 aaKnown RBP10.39□□□□□ -0.75
SYNE2-228ENST00000639659 RPUSD4Q96CM3 377 aaKnown RBP10.39□□□□□ -0.75
SYNE2-228ENST00000639659 CIB3Q96Q77 187 aaPredicted RBP10.39□□□□□ -0.75
SYNE2-228ENST00000639659 SHANK2-AS3Q9BTD1 123 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms