RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 MRPL27Q9P0M9 148 aaKnown RBP7.45□□□□□ -1.22
CLN3-261ENST00000637686 SORL1Q92673 2214 aa7.45□□□□□ -1.22
CLN3-261ENST00000637686 ZNF705EA8MWA4 302 aaPredicted RBP7.44□□□□□ -1.22
CLN3-261ENST00000637686 ZNF207O43670 478 aaKnown RBP7.44□□□□□ -1.22
CLN3-261ENST00000637686 COX7A2P2O60397 106 aa7.44□□□□□ -1.22
CLN3-261ENST00000637686 IL4P05112 153 aa7.44□□□□□ -1.22
CLN3-261ENST00000637686 GATA2P23769 480 aaPredicted RBP7.44□□□□□ -1.22
CLN3-261ENST00000637686 RAB2AP61019 212 aa7.44□□□□□ -1.22
CLN3-261ENST00000637686 C10orf113Q5VZT2 155 aa7.44□□□□□ -1.22
CLN3-261ENST00000637686 TOMM20LQ6UXN7 152 aa7.44□□□□□ -1.22
CLN3-261ENST00000637686 PQLC2Q6ZP29 291 aa7.44□□□□□ -1.22
CLN3-261ENST00000637686 OR2K2Q8NGT1 345 aa7.44□□□□□ -1.22
CLN3-261ENST00000637686 TMEM37Q8WXS4 190 aa7.44□□□□□ -1.22
CLN3-261ENST00000637686 MLXQ9UH92 298 aa7.44□□□□□ -1.22
CLN3-261ENST00000637686 FUT9Q9Y231 359 aa7.44□□□□□ -1.22
CLN3-261ENST00000637686 HIGD1AQ9Y241 93 aa7.44□□□□□ -1.22
CLN3-261ENST00000637686 PUS1Q9Y606 427 aaKnown RBP eCLIP7.44□□□□□ -1.22
CLN3-261ENST00000637686 A0A1W2PPV4 95 aa7.43□□□□□ -1.22
CLN3-261ENST00000637686 NDUFS6O75380 124 aaKnown RBP7.43□□□□□ -1.22
CLN3-261ENST00000637686 H2AFB1P0C5Y9 115 aa7.43□□□□□ -1.22
CLN3-261ENST00000637686 STAG3L2P0CL84 134 aa7.43□□□□□ -1.22
CLN3-261ENST00000637686 STAG3L3P0CL85 134 aa7.43□□□□□ -1.22
CLN3-261ENST00000637686 C8orf88P0DMB2 117 aa7.43□□□□□ -1.22
CLN3-261ENST00000637686 CRYBB3P26998 211 aa7.43□□□□□ -1.22
CLN3-261ENST00000637686 TAGLN2P37802 199 aaKnown RBP7.43□□□□□ -1.22
CLN3-261ENST00000637686 PPT1P50897 306 aa7.43□□□□□ -1.22
CLN3-261ENST00000637686 LYZP61626 148 aa7.43□□□□□ -1.22
CLN3-261ENST00000637686 KHDC3LQ587J8 217 aa7.43□□□□□ -1.22
CLN3-261ENST00000637686 FAM74A1Q5RGS3 127 aa7.43□□□□□ -1.22
CLN3-261ENST00000637686 C1orf194Q5T5A4 169 aa7.43□□□□□ -1.22
CLN3-261ENST00000637686 FAM78BQ5VT40 261 aa7.43□□□□□ -1.22
CLN3-261ENST00000637686 PATE2Q6UY27 113 aa7.43□□□□□ -1.22
CLN3-261ENST00000637686 FAM213BQ8TBF2 198 aa7.43□□□□□ -1.22
CLN3-261ENST00000637686 RAB24Q969Q5 203 aa7.43□□□□□ -1.22
CLN3-261ENST00000637686 MARC2Q969Z3 335 aa7.43□□□□□ -1.22
CLN3-261ENST00000637686 GPR82Q96P67 336 aa7.43□□□□□ -1.22
CLN3-261ENST00000637686 METTL26Q96S19 204 aa7.43□□□□□ -1.22
CLN3-261ENST00000637686 SHANK2-AS3Q9BTD1 123 aa7.43□□□□□ -1.22
CLN3-261ENST00000637686 DAZ1Q9NQZ3 744 aaKnown RBP7.43□□□□□ -1.22
CLN3-261ENST00000637686 RABAC1Q9UI14 185 aa7.43□□□□□ -1.22
CLN3-261ENST00000637686 RFNGQ9Y644 331 aa7.43□□□□□ -1.22
CLN3-261ENST00000637686 U3KQE9 123 aa7.43□□□□□ -1.22
CLN3-261ENST00000637686 ARL2-SNX15V9GYD0 113 aa7.43□□□□□ -1.22
CLN3-261ENST00000637686 A0A1W2PS18 150 aa7.42□□□□□ -1.22
CLN3-261ENST00000637686 MAP1LC3B2A6NCE7 125 aa7.42□□□□□ -1.22
CLN3-261ENST00000637686 ZNF785A8K8V0 405 aa7.42□□□□□ -1.22
CLN3-261ENST00000637686 H3BRN7 92 aa7.42□□□□□ -1.22
CLN3-261ENST00000637686 ORM2P19652 201 aa7.42□□□□□ -1.22
CLN3-261ENST00000637686 BMI1P35226 326 aa7.42□□□□□ -1.22
CLN3-261ENST00000637686 PSMB3P49720 205 aa7.42□□□□□ -1.22
CLN3-261ENST00000637686 USF2Q15853 346 aaPredicted RBP7.42□□□□□ -1.22
CLN3-261ENST00000637686 ZNF726P1Q15940 193 aa7.42□□□□□ -1.22
CLN3-261ENST00000637686 GUCA2BQ16661 112 aa7.42□□□□□ -1.22
CLN3-261ENST00000637686 FAM122CQ6P4D5 195 aa7.42□□□□□ -1.22
CLN3-261ENST00000637686 LINC00305Q7Z4B0 112 aa7.42□□□□□ -1.22
CLN3-261ENST00000637686 Q8N1Y9 231 aa7.42□□□□□ -1.22
CLN3-261ENST00000637686 OR1B1Q8NGR6 318 aa7.42□□□□□ -1.22
CLN3-261ENST00000637686 SUN5Q8TC36 379 aa7.42□□□□□ -1.22
CLN3-261ENST00000637686 NARS2Q96I59 477 aaKnown RBP7.42□□□□□ -1.22
CLN3-261ENST00000637686 SLC25A39Q9BZJ4 359 aaPredicted RBP7.42□□□□□ -1.22
CLN3-261ENST00000637686 MAP1LC3BQ9GZQ8 125 aa7.42□□□□□ -1.22
CLN3-261ENST00000637686 VSIRQ9H7M9 311 aa7.42□□□□□ -1.22
CLN3-261ENST00000637686 SEPSECSQ9HD40 501 aaKnown RBP7.42□□□□□ -1.22
CLN3-261ENST00000637686 TMEM167BQ9NRX6 74 aa7.42□□□□□ -1.22
CLN3-261ENST00000637686 TMEM14CQ9P0S9 112 aa7.42□□□□□ -1.22
CLN3-261ENST00000637686 SMAD5-AS1Q9Y6J3 95 aa7.42□□□□□ -1.22
CLN3-261ENST00000637686 IGHV3-49A0A0A0MS15 119 aa7.41□□□□□ -1.22
CLN3-261ENST00000637686 CXorf1O96002 111 aa7.41□□□□□ -1.22
CLN3-261ENST00000637686 CD5P06127 495 aa7.41□□□□□ -1.22
CLN3-261ENST00000637686 NPPCP23582 126 aa7.41□□□□□ -1.22
CLN3-261ENST00000637686 FHITP49789 147 aa7.41□□□□□ -1.22
CLN3-261ENST00000637686 MEOX2P50222 304 aa7.41□□□□□ -1.22
CLN3-261ENST00000637686 NDUFA5Q16718 116 aa7.41□□□□□ -1.22
CLN3-261ENST00000637686 GCSAMLQ5JQS6 135 aa7.41□□□□□ -1.22
CLN3-261ENST00000637686 GTSCR1Q86UQ5 136 aa7.41□□□□□ -1.22
CLN3-261ENST00000637686 TMEM61Q8N0U2 210 aa7.41□□□□□ -1.22
CLN3-261ENST00000637686 SFT2D1Q8WV19 159 aa7.41□□□□□ -1.22
CLN3-261ENST00000637686 FAM167A-AS1Q96KT0 104 aa7.41□□□□□ -1.22
CLN3-261ENST00000637686 B9D2Q9BPU9 175 aa7.41□□□□□ -1.22
CLN3-261ENST00000637686 SMDT1Q9H4I9 107 aa7.41□□□□□ -1.22
CLN3-261ENST00000637686 TMEM231Q9H6L2 316 aa7.41□□□□□ -1.22
CLN3-261ENST00000637686 SLC25A22Q9H936 323 aa7.41□□□□□ -1.22
CLN3-261ENST00000637686 SMPXQ9UHP9 88 aa7.41□□□□□ -1.22
CLN3-261ENST00000637686 IGHV7-4-1A0A0J9YVY3 117 aa7.4□□□□□ -1.22
CLN3-261ENST00000637686 LINC00862A6NCI5 91 aa7.4□□□□□ -1.22
CLN3-261ENST00000637686 ZNF98A6NK75 572 aa7.4□□□□□ -1.22
CLN3-261ENST00000637686 CHEK1O14757 476 aa7.4□□□□□ -1.22
CLN3-261ENST00000637686 BUB3O43684 328 aa7.4□□□□□ -1.22
CLN3-261ENST00000637686 RPL7P18124 248 aaKnown RBP7.4□□□□□ -1.22
CLN3-261ENST00000637686 RBPMS2Q6ZRY4 209 aaKnown RBP7.4□□□□□ -1.22
CLN3-261ENST00000637686 MIR17HGQ75NE6 70 aa7.4□□□□□ -1.22
CLN3-261ENST00000637686 BPIFA4PQ86YQ2 179 aa7.4□□□□□ -1.22
CLN3-261ENST00000637686 GRAMD2BQ96HH9 432 aa7.4□□□□□ -1.22
CLN3-261ENST00000637686 TXNDC17Q9BRA2 123 aa7.4□□□□□ -1.22
CLN3-261ENST00000637686 PBDC1Q9BVG4 233 aa7.4□□□□□ -1.22
CLN3-261ENST00000637686 RHPN1-AS1Q9BWJ2 59 aa7.4□□□□□ -1.22
CLN3-261ENST00000637686 MANBALQ9NQG1 85 aa7.4□□□□□ -1.22
CLN3-261ENST00000637686 IGHV3OR16-13A0A075B7E8 117 aa7.39□□□□□ -1.23
CLN3-261ENST00000637686 IGHV3-74A0A0B4J1X5 117 aa7.39□□□□□ -1.23
CLN3-261ENST00000637686 TRAV25A0A0B4J276 109 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms