RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 SEC11CQ9BY50 192 aa14.15□□□□□ -0.14
CLN3-254ENST00000637050 RNF24Q9Y225 148 aa14.15□□□□□ -0.14
CLN3-254ENST00000637050 C11orf94C9JXX5 98 aa14.14□□□□□ -0.15
CLN3-254ENST00000637050 CDX1P47902 265 aaPredicted RBP14.14□□□□□ -0.15
CLN3-254ENST00000637050 CST9LP1Q5W188 147 aa14.14□□□□□ -0.15
CLN3-254ENST00000637050 BPIFA4PQ86YQ2 179 aa14.14□□□□□ -0.15
CLN3-254ENST00000637050 NSD1Q96L73 2696 aaPredicted RBP14.14□□□□□ -0.15
CLN3-254ENST00000637050 CUBNO60494 3623 aa14.14□□□□□ -0.15
CLN3-254ENST00000637050 A0A1W2PRE2 83 aa14.14□□□□□ -0.15
CLN3-254ENST00000637050 F8W036 122 aa14.14□□□□□ -0.15
CLN3-254ENST00000637050 MRPS12O15235 138 aaKnown RBP14.14□□□□□ -0.15
CLN3-254ENST00000637050 CRYBB3P26998 211 aa14.14□□□□□ -0.15
CLN3-254ENST00000637050 ATP5G3P48201 142 aa14.14□□□□□ -0.15
CLN3-254ENST00000637050 UNQ9165/PRO28630Q6UXU0 137 aa14.14□□□□□ -0.15
CLN3-254ENST00000637050 CYB561D1Q8N8Q1 229 aa14.14□□□□□ -0.15
CLN3-254ENST00000637050 U3KQE9 123 aa14.14□□□□□ -0.15
CLN3-254ENST00000637050 FN1P02751 2386 aaKnown RBP14.13□□□□□ -0.15
CLN3-254ENST00000637050 NBEAP1P0C6P0 100 aa14.13□□□□□ -0.15
CLN3-254ENST00000637050 GPHB5Q86YW7 130 aa14.13□□□□□ -0.15
CLN3-254ENST00000637050 OR4F5Q8NH21 305 aa14.13□□□□□ -0.15
CLN3-254ENST00000637050 OR4F4Q96R69 305 aa14.13□□□□□ -0.15
CLN3-254ENST00000637050 METTL26Q96S19 204 aa14.13□□□□□ -0.15
CLN3-254ENST00000637050 C20orf24Q9BUV8 137 aa14.13□□□□□ -0.15
CLN3-254ENST00000637050 CARHSP1Q9Y2V2 147 aaKnown RBP14.13□□□□□ -0.15
CLN3-254ENST00000637050 TMEM250H0YL14 139 aa14.12□□□□□ -0.15
CLN3-254ENST00000637050 HIST1H1EP10412 219 aaKnown RBP14.12□□□□□ -0.15
CLN3-254ENST00000637050 NPPCP23582 126 aa14.12□□□□□ -0.15
CLN3-254ENST00000637050 WFDC12Q8WWY7 111 aa14.12□□□□□ -0.15
CLN3-254ENST00000637050 TMEM190Q8WZ59 177 aa14.12□□□□□ -0.15
CLN3-254ENST00000637050 BUB3O43684 328 aa14.11□□□□□ -0.15
CLN3-254ENST00000637050 PDE6DO43924 150 aa14.11□□□□□ -0.15
CLN3-254ENST00000637050 SCO1O75880 301 aa14.11□□□□□ -0.15
CLN3-254ENST00000637050 IGLC2P0DOY2 106 aa14.11□□□□□ -0.15
CLN3-254ENST00000637050 SETXQ7Z333 2677 aaKnown RBP14.11□□□□□ -0.15
CLN3-254ENST00000637050 H3BQ15 152 aa14.1□□□□□ -0.15
CLN3-254ENST00000637050 ZNF207O43670 478 aaKnown RBP14.1□□□□□ -0.15
CLN3-254ENST00000637050 RPL7P18124 248 aaKnown RBP14.1□□□□□ -0.15
CLN3-254ENST00000637050 FAM106AQ4KMX7 169 aa14.1□□□□□ -0.15
CLN3-254ENST00000637050 SOHLH1Q5JUK2 328 aa14.1□□□□□ -0.15
CLN3-254ENST00000637050 C1orf194Q5T5A4 169 aa14.1□□□□□ -0.15
CLN3-254ENST00000637050 FAM90A2PQ658T7 463 aa14.1□□□□□ -0.15
CLN3-254ENST00000637050 OR4F17Q8NGA8 305 aa14.1□□□□□ -0.15
CLN3-254ENST00000637050 C4orf3Q8WVX3 66 aa14.1□□□□□ -0.15
CLN3-254ENST00000637050 ZNF586Q9NXT0 402 aa14.1□□□□□ -0.15
CLN3-254ENST00000637050 IGHV4OR15-8A0A075B7B6 117 aa14.1□□□□□ -0.15
CLN3-254ENST00000637050 A0A087WW49 117 aa14.1□□□□□ -0.15
CLN3-254ENST00000637050 GGTLC3B5MD39 225 aa14.1□□□□□ -0.15
CLN3-254ENST00000637050 F6UZH7 168 aa14.1□□□□□ -0.15
CLN3-254ENST00000637050 APOHP02749 345 aaPredicted RBP14.1□□□□□ -0.15
CLN3-254ENST00000637050 SNRPCP09234 159 aaKnown RBP14.1□□□□□ -0.15
CLN3-254ENST00000637050 RPEL1Q2QD12 228 aa14.1□□□□□ -0.15
CLN3-254ENST00000637050 C18orf65Q6ZTR6 163 aa14.1□□□□□ -0.15
CLN3-254ENST00000637050 OR8I2Q8N0Y5 310 aa14.1□□□□□ -0.15
CLN3-254ENST00000637050 BLNKQ8WV28 456 aa14.1□□□□□ -0.15
CLN3-254ENST00000637050 NKX6-2Q9C056 277 aaPredicted RBP14.1□□□□□ -0.15
CLN3-254ENST00000637050 RNF114Q9Y508 228 aa14.1□□□□□ -0.15
CLN3-254ENST00000637050 ZNF320A2RRD8 509 aa14.09□□□□□ -0.15
CLN3-254ENST00000637050 APOC3P02656 99 aa14.09□□□□□ -0.15
CLN3-254ENST00000637050 CEBPGP53567 150 aa14.09□□□□□ -0.15
CLN3-254ENST00000637050 PROK1P58294 105 aa14.09□□□□□ -0.15
CLN3-254ENST00000637050 SRSF2Q01130 221 aaKnown RBP14.09□□□□□ -0.15
CLN3-254ENST00000637050 TRBV19A0A075B6N1 114 aa14.08□□□□□ -0.16
CLN3-254ENST00000637050 K7EMT4 169 aa14.08□□□□□ -0.16
CLN3-254ENST00000637050 MYCNOSP40205 109 aa14.08□□□□□ -0.16
CLN3-254ENST00000637050 SUMO1P63165 101 aaKnown RBP14.08□□□□□ -0.16
CLN3-254ENST00000637050 GPR82Q96P67 336 aa14.08□□□□□ -0.16
CLN3-254ENST00000637050 F8P00451 2351 aa14.08□□□□□ -0.16
CLN3-254ENST00000637050 CD28P10747 220 aa14.07□□□□□ -0.16
CLN3-254ENST00000637050 RANP62826 216 aaKnown RBP14.07□□□□□ -0.16
CLN3-254ENST00000637050 KHDC1LQ5JSQ8 128 aa14.07□□□□□ -0.16
CLN3-254ENST00000637050 C11orf52Q96A22 123 aa14.07□□□□□ -0.16
CLN3-254ENST00000637050 DAZ1Q9NQZ3 744 aaKnown RBP14.07□□□□□ -0.16
CLN3-254ENST00000637050 SMAD5-AS1Q9Y6J3 95 aa14.07□□□□□ -0.16
CLN3-254ENST00000637050 H3BTX0 84 aa14.07□□□□□ -0.16
CLN3-254ENST00000637050 NDUFB4O95168 129 aa14.07□□□□□ -0.16
CLN3-254ENST00000637050 GUCA2BQ16661 112 aa14.07□□□□□ -0.16
CLN3-254ENST00000637050 C17orf77Q96MU5 243 aa14.07□□□□□ -0.16
CLN3-254ENST00000637050 ELOVL1Q9BW60 279 aa14.07□□□□□ -0.16
CLN3-254ENST00000637050 NF1P21359 2839 aa14.06□□□□□ -0.16
CLN3-254ENST00000637050 IGHV3OR16-13A0A075B7E8 117 aa14.06□□□□□ -0.16
CLN3-254ENST00000637050 IGHV3-49A0A0A0MS15 119 aa14.06□□□□□ -0.16
CLN3-254ENST00000637050 IGHV3-74A0A0B4J1X5 117 aa14.06□□□□□ -0.16
CLN3-254ENST00000637050 IGHV3-66A0A0C4DH42 116 aa14.06□□□□□ -0.16
CLN3-254ENST00000637050 SCO2A0A1W2PP80 73 aa14.06□□□□□ -0.16
CLN3-254ENST00000637050 HAX1O00165 279 aa14.06□□□□□ -0.16
CLN3-254ENST00000637050 LGALS9O00182 355 aa14.06□□□□□ -0.16
CLN3-254ENST00000637050 HOXD3P31249 432 aaPredicted RBP14.06□□□□□ -0.16
CLN3-254ENST00000637050 PDE6HQ13956 83 aa14.06□□□□□ -0.16
CLN3-254ENST00000637050 TM4SF20Q53R12 229 aa14.06□□□□□ -0.16
CLN3-254ENST00000637050 C16orf54Q6UWD8 224 aa14.06□□□□□ -0.16
CLN3-254ENST00000637050 REC114Q7Z4M0 266 aa14.06□□□□□ -0.16
CLN3-254ENST00000637050 KLHL30-AS1Q8NEE0 82 aa14.06□□□□□ -0.16
CLN3-254ENST00000637050 UFC1Q9Y3C8 167 aa14.06□□□□□ -0.16
CLN3-254ENST00000637050 DEFB136Q30KP8 78 aa14.05□□□□□ -0.16
CLN3-254ENST00000637050 SVBPQ8N300 66 aa14.05□□□□□ -0.16
CLN3-254ENST00000637050 GLMPQ8WWB7 406 aa14.05□□□□□ -0.16
CLN3-254ENST00000637050 PARLQ9H300 379 aa14.05□□□□□ -0.16
CLN3-254ENST00000637050 Q9H3A6 140 aa14.05□□□□□ -0.16
CLN3-254ENST00000637050 A0A087X0K7 114 aa14.04□□□□□ -0.16
CLN3-254ENST00000637050 IGHV7-4-1A0A0J9YVY3 117 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms