RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 CD300CQ08708 224 aa9.87□□□□□ -0.83
CLN3-249ENST00000636685 BSXQ3C1V8 233 aa9.87□□□□□ -0.83
CLN3-249ENST00000636685 DEDD2Q8WXF8 326 aa9.87□□□□□ -0.83
CLN3-249ENST00000636685 TRIM63Q969Q1 353 aa9.87□□□□□ -0.83
CLN3-249ENST00000636685 LINC01587Q99440 93 aa9.87□□□□□ -0.83
CLN3-249ENST00000636685 AUNIPQ9H7T9 357 aa9.87□□□□□ -0.83
CLN3-249ENST00000636685 ENY2Q9NPA8 101 aa9.87□□□□□ -0.83
CLN3-249ENST00000636685 DIABLOQ9NR28 239 aa9.87□□□□□ -0.83
CLN3-249ENST00000636685 GABARAPH6UMI1 98 aa9.86□□□□□ -0.83
CLN3-249ENST00000636685 OXTP01178 125 aa9.86□□□□□ -0.83
CLN3-249ENST00000636685 PSG1P11464 419 aa9.86□□□□□ -0.83
CLN3-249ENST00000636685 OR10J6PQ8NGY7 276 aa9.86□□□□□ -0.83
CLN3-249ENST00000636685 SMIM4Q8WVI0 70 aa9.86□□□□□ -0.83
CLN3-249ENST00000636685 PBDC1Q9BVG4 233 aa9.86□□□□□ -0.83
CLN3-249ENST00000636685 A0A096LPF7 62 aa9.85□□□□□ -0.83
CLN3-249ENST00000636685 NXPH4O95158 308 aa9.85□□□□□ -0.83
CLN3-249ENST00000636685 CBX5P45973 191 aa9.85□□□□□ -0.83
CLN3-249ENST00000636685 CNN1P51911 297 aaKnown RBP9.85□□□□□ -0.83
CLN3-249ENST00000636685 TAS2R20P59543 309 aa9.85□□□□□ -0.83
CLN3-249ENST00000636685 NPIPB3Q92617 1050 aa9.85□□□□□ -0.83
CLN3-249ENST00000636685 SLC25A38Q96DW6 304 aa9.85□□□□□ -0.83
CLN3-249ENST00000636685 C16orf74Q96GX8 76 aa9.85□□□□□ -0.83
CLN3-249ENST00000636685 ST6GAL2Q96JF0 529 aa9.85□□□□□ -0.83
CLN3-249ENST00000636685 PDCD10Q9BUL8 212 aa9.85□□□□□ -0.83
CLN3-249ENST00000636685 IFT46Q9NQC8 304 aa9.85□□□□□ -0.83
CLN3-249ENST00000636685 H3BNG1 76 aa9.84□□□□□ -0.83
CLN3-249ENST00000636685 SLC25A4P12235 298 aa9.84□□□□□ -0.83
CLN3-249ENST00000636685 NUP62P37198 522 aaPredicted RBP9.84□□□□□ -0.83
CLN3-249ENST00000636685 TAS2R60P59551 318 aa9.84□□□□□ -0.83
CLN3-249ENST00000636685 ZFP69Q49AA0 526 aa9.84□□□□□ -0.83
CLN3-249ENST00000636685 ACY3Q96HD9 319 aa9.84□□□□□ -0.83
CLN3-249ENST00000636685 C16orf92Q96LL3 132 aa9.84□□□□□ -0.83
CLN3-249ENST00000636685 ALG5Q9Y673 324 aa9.84□□□□□ -0.83
CLN3-249ENST00000636685 A0A0A6YYH2 397 aa9.83□□□□□ -0.84
CLN3-249ENST00000636685 A6NJ64 397 aa9.83□□□□□ -0.84
CLN3-249ENST00000636685 TCRBP04435 133 aa9.83□□□□□ -0.84
CLN3-249ENST00000636685 H2AFB2P0C5Z0 115 aa9.83□□□□□ -0.84
CLN3-249ENST00000636685 S100GP29377 79 aa9.83□□□□□ -0.84
CLN3-249ENST00000636685 RRAS2P62070 204 aaPredicted RBP9.83□□□□□ -0.84
CLN3-249ENST00000636685 SUPT4H1P63272 117 aaKnown RBP9.83□□□□□ -0.84
CLN3-249ENST00000636685 SSBP1Q04837 148 aaKnown RBP9.83□□□□□ -0.84
CLN3-249ENST00000636685 KLF9Q13886 244 aaPredicted RBP9.83□□□□□ -0.84
CLN3-249ENST00000636685 TMEM144Q7Z5S9 345 aa9.83□□□□□ -0.84
CLN3-249ENST00000636685 TCTE3Q8IZS6 198 aa9.83□□□□□ -0.84
CLN3-249ENST00000636685 LINC00612Q8N6U2 182 aa9.83□□□□□ -0.84
CLN3-249ENST00000636685 OR5H2Q8NGV7 314 aa9.83□□□□□ -0.84
CLN3-249ENST00000636685 ZNF486Q96H40 463 aaPredicted RBP9.83□□□□□ -0.84
CLN3-249ENST00000636685 SLC25A39Q9BZJ4 359 aaPredicted RBP9.83□□□□□ -0.84
CLN3-249ENST00000636685 GAGE12BA1L429 117 aa9.82□□□□□ -0.84
CLN3-249ENST00000636685 GAGE7O76087 117 aa9.82□□□□□ -0.84
CLN3-249ENST00000636685 DUSP14O95147 198 aaKnown RBP9.82□□□□□ -0.84
CLN3-249ENST00000636685 GAGE12FP0CL80 117 aa9.82□□□□□ -0.84
CLN3-249ENST00000636685 GAGE12GP0CL81 117 aa9.82□□□□□ -0.84
CLN3-249ENST00000636685 GAGE12IP0CL82 117 aa9.82□□□□□ -0.84
CLN3-249ENST00000636685 UCP1P25874 307 aa9.82□□□□□ -0.84
CLN3-249ENST00000636685 AKR1C2P52895 323 aa9.82□□□□□ -0.84
CLN3-249ENST00000636685 OR8G2PQ6IF36 304 aa9.82□□□□□ -0.84
CLN3-249ENST00000636685 TMED4Q7Z7H5 227 aa9.82□□□□□ -0.84
CLN3-249ENST00000636685 RNASE8Q8TDE3 154 aaKnown RBP9.82□□□□□ -0.84
CLN3-249ENST00000636685 VSIG2Q96IQ7 327 aa9.82□□□□□ -0.84
CLN3-249ENST00000636685 PFDN2Q9UHV9 154 aa9.82□□□□□ -0.84
CLN3-249ENST00000636685 ANKRD20A5PA0PJZ0 165 aa9.81□□□□□ -0.84
CLN3-249ENST00000636685 C7orf66A4D0T2 115 aa9.81□□□□□ -0.84
CLN3-249ENST00000636685 PRAF2O60831 178 aa9.81□□□□□ -0.84
CLN3-249ENST00000636685 ADAP1O75689 374 aa9.81□□□□□ -0.84
CLN3-249ENST00000636685 FAUP35544 74 aaKnown RBP9.81□□□□□ -0.84
CLN3-249ENST00000636685 HTR2BP41595 481 aa9.81□□□□□ -0.84
CLN3-249ENST00000636685 C1orf194Q5T5A4 169 aa9.81□□□□□ -0.84
CLN3-249ENST00000636685 IGFL4Q6B9Z1 124 aa9.81□□□□□ -0.84
CLN3-249ENST00000636685 NOXA1Q86UR1 476 aa9.81□□□□□ -0.84
CLN3-249ENST00000636685 OR8I2Q8N0Y5 310 aa9.81□□□□□ -0.84
CLN3-249ENST00000636685 TMEM256Q8N2U0 113 aa9.81□□□□□ -0.84
CLN3-249ENST00000636685 OR52I2Q8NH67 350 aa9.81□□□□□ -0.84
CLN3-249ENST00000636685 RNASEH2CQ8TDP1 164 aaKnown RBP9.81□□□□□ -0.84
CLN3-249ENST00000636685 TMEM170AQ8WVE7 144 aa9.81□□□□□ -0.84
CLN3-249ENST00000636685 FAM210AQ96ND0 272 aa9.81□□□□□ -0.84
CLN3-249ENST00000636685 MED28Q9H204 178 aa9.81□□□□□ -0.84
CLN3-249ENST00000636685 A0A0G2JRQ6 117 aa9.8□□□□□ -0.84
CLN3-249ENST00000636685 NPIPB6E9PJ23 425 aa9.8□□□□□ -0.84
CLN3-249ENST00000636685 PRSS3P35030 304 aa9.8□□□□□ -0.84
CLN3-249ENST00000636685 BTCP35070 178 aa9.8□□□□□ -0.84
CLN3-249ENST00000636685 TAS2R46P59540 309 aa9.8□□□□□ -0.84
CLN3-249ENST00000636685 C2orf83Q53S99 150 aa9.8□□□□□ -0.84
CLN3-249ENST00000636685 ZNF493Q6ZR52 646 aa9.8□□□□□ -0.84
CLN3-249ENST00000636685 NTN5Q8WTR8 489 aaPredicted RBP9.8□□□□□ -0.84
CLN3-249ENST00000636685 TMEM263Q8WUH6 116 aaKnown RBP9.8□□□□□ -0.84
CLN3-249ENST00000636685 TMPRSS5Q9H3S3 457 aa9.8□□□□□ -0.84
CLN3-249ENST00000636685 HEYLQ9NQ87 328 aaPredicted RBP9.8□□□□□ -0.84
CLN3-249ENST00000636685 MSRB1Q9NZV6 116 aa9.8□□□□□ -0.84
CLN3-249ENST00000636685 MTFP1Q9UDX5 166 aa9.8□□□□□ -0.84
CLN3-249ENST00000636685 ANAPC10Q9UM13 185 aa9.8□□□□□ -0.84
CLN3-249ENST00000636685 C1QBP02746 253 aa9.79□□□□□ -0.84
CLN3-249ENST00000636685 HRH1P35367 487 aa9.79□□□□□ -0.84
CLN3-249ENST00000636685 KRTAP10-4P60372 401 aaPredicted RBP9.79□□□□□ -0.84
CLN3-249ENST00000636685 LYZP61626 148 aa9.79□□□□□ -0.84
CLN3-249ENST00000636685 NDUFA5Q16718 116 aa9.79□□□□□ -0.84
CLN3-249ENST00000636685 SAMD13Q5VXD3 122 aa9.79□□□□□ -0.84
CLN3-249ENST00000636685 LPCAT3Q6P1A2 487 aa9.79□□□□□ -0.84
CLN3-249ENST00000636685 SLC24A4Q8NFF2 622 aa9.79□□□□□ -0.84
CLN3-249ENST00000636685 TNXBP22105 4242 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms