RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 ZNF664Q8N3J9 261 aa11.07□□□□□ -0.64
CLN3-242ENST00000635958 OR5T1Q8NG75 326 aa11.07□□□□□ -0.64
CLN3-242ENST00000635958 GATAD1Q8WUU5 269 aa11.07□□□□□ -0.64
CLN3-242ENST00000635958 C11orf52Q96A22 123 aa11.07□□□□□ -0.64
CLN3-242ENST00000635958 JMJD8Q96S16 334 aa11.07□□□□□ -0.64
CLN3-242ENST00000635958 C19orf24Q9BVV8 132 aa11.07□□□□□ -0.64
CLN3-242ENST00000635958 NDUFB4O95168 129 aa11.06□□□□□ -0.64
CLN3-242ENST00000635958 ESDP10768 282 aa11.06□□□□□ -0.64
CLN3-242ENST00000635958 DEFA4P12838 97 aa11.06□□□□□ -0.64
CLN3-242ENST00000635958 RPL29P47914 159 aaKnown RBP11.06□□□□□ -0.64
CLN3-242ENST00000635958 ECSCRQ19T08 205 aa11.06□□□□□ -0.64
CLN3-242ENST00000635958 TREML4Q6UXN2 200 aa11.06□□□□□ -0.64
CLN3-242ENST00000635958 ELOVL1Q9BW60 279 aa11.06□□□□□ -0.64
CLN3-242ENST00000635958 FNDC4Q9H6D8 234 aaPredicted RBP11.06□□□□□ -0.64
CLN3-242ENST00000635958 FAM181BA6NEQ2 426 aa11.05□□□□□ -0.64
CLN3-242ENST00000635958 ZNF705GA8MUZ8 300 aaPredicted RBP11.05□□□□□ -0.64
CLN3-242ENST00000635958 ARSJQ5FYB0 599 aaPredicted RBP11.05□□□□□ -0.64
CLN3-242ENST00000635958 GGTLC1Q9BX51 225 aa11.05□□□□□ -0.64
CLN3-242ENST00000635958 IL36BQ9NZH7 164 aa11.05□□□□□ -0.64
CLN3-242ENST00000635958 I3L2K1 104 aa11.05□□□□□ -0.64
CLN3-242ENST00000635958 ERVFC1-1P60608 527 aa11.05□□□□□ -0.64
CLN3-242ENST00000635958 RANP62826 216 aaKnown RBP11.05□□□□□ -0.64
CLN3-242ENST00000635958 CFHR3Q02985 330 aa11.05□□□□□ -0.64
CLN3-242ENST00000635958 MLANAQ16655 118 aa11.05□□□□□ -0.64
CLN3-242ENST00000635958 C1orf194Q5T5A4 169 aa11.05□□□□□ -0.64
CLN3-242ENST00000635958 ETFRF1Q6IPR1 90 aa11.05□□□□□ -0.64
CLN3-242ENST00000635958 TEPPQ6URK8 271 aa11.05□□□□□ -0.64
CLN3-242ENST00000635958 TMEM167BQ9NRX6 74 aa11.05□□□□□ -0.64
CLN3-242ENST00000635958 LSM4Q9Y4Z0 139 aaKnown RBP11.05□□□□□ -0.64
CLN3-242ENST00000635958 TPPP2P59282 170 aa11.04□□□□□ -0.64
CLN3-242ENST00000635958 MISP3Q96FF7 219 aa11.04□□□□□ -0.64
CLN3-242ENST00000635958 THYN1Q9P016 225 aa11.04□□□□□ -0.64
CLN3-242ENST00000635958 LINC00527Q9UJ94 153 aa11.04□□□□□ -0.64
CLN3-242ENST00000635958 H3BUA1 57 aa11.03□□□□□ -0.64
CLN3-242ENST00000635958 K7EIM0 57 aa11.03□□□□□ -0.64
CLN3-242ENST00000635958 IGLV1-40P01703 118 aa11.03□□□□□ -0.64
CLN3-242ENST00000635958 GCHFRP30047 84 aa11.03□□□□□ -0.64
CLN3-242ENST00000635958 ATP5G3P48201 142 aa11.03□□□□□ -0.64
CLN3-242ENST00000635958 SLC35E1Q96K37 410 aa11.03□□□□□ -0.64
CLN3-242ENST00000635958 MGST2Q99735 147 aa11.03□□□□□ -0.64
CLN3-242ENST00000635958 MT-ND6P03923 174 aa11.02□□□□□ -0.64
CLN3-242ENST00000635958 OR10J4P0C629 311 aa11.02□□□□□ -0.64
CLN3-242ENST00000635958 ARL14EPLP0DKL9 152 aa11.02□□□□□ -0.64
CLN3-242ENST00000635958 WDR73Q6P4I2 378 aa11.02□□□□□ -0.64
CLN3-242ENST00000635958 TEX38Q6PEX7 206 aa11.02□□□□□ -0.64
CLN3-242ENST00000635958 Q6ZSV7 163 aa11.02□□□□□ -0.64
CLN3-242ENST00000635958 TMEM116Q8NCL8 245 aa11.02□□□□□ -0.64
CLN3-242ENST00000635958 SERTAD4Q9NUC0 356 aa11.02□□□□□ -0.64
CLN3-242ENST00000635958 NAGKQ9UJ70 344 aa11.02□□□□□ -0.64
CLN3-242ENST00000635958 SLC45A2Q9UMX9 530 aa11.02□□□□□ -0.64
CLN3-242ENST00000635958 A0A1B0GV90 55 aa11.02□□□□□ -0.65
CLN3-242ENST00000635958 TMEM89A2RUT3 159 aa11.02□□□□□ -0.65
CLN3-242ENST00000635958 UBE2G2P60604 165 aa11.02□□□□□ -0.65
CLN3-242ENST00000635958 Q0VG73 95 aa11.02□□□□□ -0.65
CLN3-242ENST00000635958 TMEM95Q3KNT9 176 aa11.02□□□□□ -0.65
CLN3-242ENST00000635958 OR2T6Q8NHC8 308 aa11.02□□□□□ -0.65
CLN3-242ENST00000635958 MS4A10Q96PG2 267 aa11.02□□□□□ -0.65
CLN3-242ENST00000635958 RNF2Q99496 336 aa11.02□□□□□ -0.65
CLN3-242ENST00000635958 KIR2DL5BA0A0G2JN68 375 aa11.01□□□□□ -0.65
CLN3-242ENST00000635958 KIR2DL5BA0A0G2JPC4 375 aa11.01□□□□□ -0.65
CLN3-242ENST00000635958 M0R143 59 aa11.01□□□□□ -0.65
CLN3-242ENST00000635958 TCF21O43680 179 aa11.01□□□□□ -0.65
CLN3-242ENST00000635958 NDUFB8O95169 186 aa11.01□□□□□ -0.65
CLN3-242ENST00000635958 SCGB1D1O95968 90 aa11.01□□□□□ -0.65
CLN3-242ENST00000635958 IGHG4P01861 327 aa11.01□□□□□ -0.65
CLN3-242ENST00000635958 ZNF90Q03938 601 aa11.01□□□□□ -0.65
CLN3-242ENST00000635958 USF2Q15853 346 aaPredicted RBP11.01□□□□□ -0.65
CLN3-242ENST00000635958 KIR2DL5AQ8N109 375 aa11.01□□□□□ -0.65
CLN3-242ENST00000635958 CMTM2Q8TAZ6 248 aa11.01□□□□□ -0.65
CLN3-242ENST00000635958 VN1R17PQ8TDU5 208 aa11.01□□□□□ -0.65
CLN3-242ENST00000635958 GNB1LQ9BYB4 327 aa11.01□□□□□ -0.65
CLN3-242ENST00000635958 C16orf95Q9H693 158 aa11.01□□□□□ -0.65
CLN3-242ENST00000635958 MRPL36Q9P0J6 103 aaKnown RBP11.01□□□□□ -0.65
CLN3-242ENST00000635958 FBXL7Q9UJT9 491 aa11.01□□□□□ -0.65
CLN3-242ENST00000635958 CUBNO60494 3623 aa11.01□□□□□ -0.65
CLN3-242ENST00000635958 OR2J3O76001 311 aa11□□□□□ -0.65
CLN3-242ENST00000635958 FCGR2BP31994 310 aaPredicted RBP11□□□□□ -0.65
CLN3-242ENST00000635958 TAS2R45P59539 299 aa11□□□□□ -0.65
CLN3-242ENST00000635958 RHOGP84095 191 aa11□□□□□ -0.65
CLN3-242ENST00000635958 RPEL1Q2QD12 228 aa11□□□□□ -0.65
CLN3-242ENST00000635958 THAP8Q8NA92 274 aa11□□□□□ -0.65
CLN3-242ENST00000635958 OCC1Q8TAD7 63 aa11□□□□□ -0.65
CLN3-242ENST00000635958 IGKV1OR2-108A0A075B7D4 117 aa11□□□□□ -0.65
CLN3-242ENST00000635958 NUTF2P61970 127 aaKnown RBP11□□□□□ -0.65
CLN3-242ENST00000635958 PRR20EP86478 221 aa11□□□□□ -0.65
CLN3-242ENST00000635958 PRR20CP86479 221 aa11□□□□□ -0.65
CLN3-242ENST00000635958 PRR20DP86480 221 aa11□□□□□ -0.65
CLN3-242ENST00000635958 PRR20BP86481 221 aa11□□□□□ -0.65
CLN3-242ENST00000635958 PRR20AP86496 221 aa11□□□□□ -0.65
CLN3-242ENST00000635958 MIC13Q5XKP0 118 aa11□□□□□ -0.65
CLN3-242ENST00000635958 PQLC2Q6ZP29 291 aa11□□□□□ -0.65
CLN3-242ENST00000635958 NPIPB3Q92617 1050 aa11□□□□□ -0.65
CLN3-242ENST00000635958 OSTCQ9NRP0 149 aa11□□□□□ -0.65
CLN3-242ENST00000635958 ZNF355PQ9NSJ1 428 aa11□□□□□ -0.65
CLN3-242ENST00000635958 TECRQ9NZ01 308 aaKnown RBP11□□□□□ -0.65
CLN3-242ENST00000635958 FAM223BA6NKX1 122 aa10.99□□□□□ -0.65
CLN3-242ENST00000635958 NDUFA7O95182 113 aa10.99□□□□□ -0.65
CLN3-242ENST00000635958 IGHV3-48P01763 117 aa10.99□□□□□ -0.65
CLN3-242ENST00000635958 CRISP2P16562 243 aa10.99□□□□□ -0.65
CLN3-242ENST00000635958 PSMB8P28062 276 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms