RNA–Protein interactions for RNA: ENST00000631420.1

LIMS3-206, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 1,580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-206ENST00000631420 A0A1B0GV50 99 aa11.19□□□□□ -0.62
LIMS3-206ENST00000631420 M0QZ24 198 aa11.19□□□□□ -0.62
LIMS3-206ENST00000631420 FGF8P55075 233 aaPredicted RBP11.19□□□□□ -0.62
LIMS3-206ENST00000631420 DPPA3Q6W0C5 159 aa11.19□□□□□ -0.62
LIMS3-206ENST00000631420 OR8I2Q8N0Y5 310 aa11.19□□□□□ -0.62
LIMS3-206ENST00000631420 SFT2D1Q8WV19 159 aa11.19□□□□□ -0.62
LIMS3-206ENST00000631420 TECRQ9NZ01 308 aaKnown RBP11.19□□□□□ -0.62
LIMS3-206ENST00000631420 MLXQ9UH92 298 aa11.19□□□□□ -0.62
LIMS3-206ENST00000631420 SMAD5-AS1Q9Y6J3 95 aa11.19□□□□□ -0.62
LIMS3-206ENST00000631420 A0A1W2PS18 150 aa11.18□□□□□ -0.62
LIMS3-206ENST00000631420 MRPS12O15235 138 aaKnown RBP11.18□□□□□ -0.62
LIMS3-206ENST00000631420 H2AFB1P0C5Y9 115 aa11.18□□□□□ -0.62
LIMS3-206ENST00000631420 STAG3L2P0CL84 134 aa11.18□□□□□ -0.62
LIMS3-206ENST00000631420 STAG3L3P0CL85 134 aa11.18□□□□□ -0.62
LIMS3-206ENST00000631420 PYYP10082 97 aa11.18□□□□□ -0.62
LIMS3-206ENST00000631420 S100A7AQ86SG5 101 aa11.18□□□□□ -0.62
LIMS3-206ENST00000631420 GLMPQ8WWB7 406 aa11.18□□□□□ -0.62
LIMS3-206ENST00000631420 MBD3L1Q8WWY6 194 aa11.18□□□□□ -0.62
LIMS3-206ENST00000631420 NARS2Q96I59 477 aaKnown RBP11.18□□□□□ -0.62
LIMS3-206ENST00000631420 PFDN2Q9UHV9 154 aa11.18□□□□□ -0.62
LIMS3-206ENST00000631420 MAP1LC3B2A6NCE7 125 aa11.17□□□□□ -0.62
LIMS3-206ENST00000631420 ZNF767PQ75MW2 155 aa11.17□□□□□ -0.62
LIMS3-206ENST00000631420 MARC2Q969Z3 335 aa11.17□□□□□ -0.62
LIMS3-206ENST00000631420 C17orf77Q96MU5 243 aa11.17□□□□□ -0.62
LIMS3-206ENST00000631420 MAP1LC3BQ9GZQ8 125 aa11.17□□□□□ -0.62
LIMS3-206ENST00000631420 OR51M1Q9H341 326 aa11.17□□□□□ -0.62
LIMS3-206ENST00000631420 TMPRSS5Q9H3S3 457 aa11.17□□□□□ -0.62
LIMS3-206ENST00000631420 VWFP04275 2813 aa11.17□□□□□ -0.62
LIMS3-206ENST00000631420 H3BTX0 84 aa11.16□□□□□ -0.62
LIMS3-206ENST00000631420 OR7C2O60412 319 aa11.16□□□□□ -0.62
LIMS3-206ENST00000631420 OR10J4P0C629 311 aa11.16□□□□□ -0.62
LIMS3-206ENST00000631420 ARL14EPLP0DKL9 152 aa11.16□□□□□ -0.62
LIMS3-206ENST00000631420 GP9P14770 177 aa11.16□□□□□ -0.62
LIMS3-206ENST00000631420 S100A7P31151 101 aa11.16□□□□□ -0.62
LIMS3-206ENST00000631420 TAS2R45P59539 299 aa11.16□□□□□ -0.62
LIMS3-206ENST00000631420 CCL20P78556 96 aa11.16□□□□□ -0.62
LIMS3-206ENST00000631420 C1orf194Q5T5A4 169 aa11.16□□□□□ -0.62
LIMS3-206ENST00000631420 GRAMD2BQ96HH9 432 aa11.16□□□□□ -0.62
LIMS3-206ENST00000631420 PAXXQ9BUH6 204 aa11.16□□□□□ -0.62
LIMS3-206ENST00000631420 ANK2Q01484 3957 aa11.16□□□□□ -0.62
LIMS3-206ENST00000631420 IGKV3-7A0A075B6H7 116 aa11.16□□□□□ -0.62
LIMS3-206ENST00000631420 H3BQ15 152 aa11.16□□□□□ -0.62
LIMS3-206ENST00000631420 SAP30O75446 220 aa11.16□□□□□ -0.62
LIMS3-206ENST00000631420 NMBP08949 121 aa11.16□□□□□ -0.62
LIMS3-206ENST00000631420 BLOC1S1P78537 153 aa11.16□□□□□ -0.62
LIMS3-206ENST00000631420 DEFB114Q30KQ6 69 aa11.16□□□□□ -0.62
LIMS3-206ENST00000631420 KHDC3LQ587J8 217 aa11.16□□□□□ -0.62
LIMS3-206ENST00000631420 FAM90A2PQ658T7 463 aa11.16□□□□□ -0.62
LIMS3-206ENST00000631420 TCF24Q7RTU0 167 aa11.16□□□□□ -0.62
LIMS3-206ENST00000631420 BPIFA4PQ86YQ2 179 aa11.16□□□□□ -0.62
LIMS3-206ENST00000631420 WFDC9Q8NEX5 89 aa11.16□□□□□ -0.62
LIMS3-206ENST00000631420 SAT2Q96F10 170 aaPredicted RBP11.16□□□□□ -0.62
LIMS3-206ENST00000631420 RPL7P18124 248 aaKnown RBP11.15□□□□□ -0.62
LIMS3-206ENST00000631420 CD33P20138 364 aa11.15□□□□□ -0.62
LIMS3-206ENST00000631420 RPL11P62913 178 aaKnown RBP11.15□□□□□ -0.62
LIMS3-206ENST00000631420 SIGLEC15Q6ZMC9 328 aa11.15□□□□□ -0.62
LIMS3-206ENST00000631420 IQCF2Q8IXL9 164 aa11.15□□□□□ -0.62
LIMS3-206ENST00000631420 LRRC20Q8TCA0 184 aa11.15□□□□□ -0.62
LIMS3-206ENST00000631420 DYNLRB2Q8TF09 96 aa11.15□□□□□ -0.62
LIMS3-206ENST00000631420 FXYD5Q96DB9 178 aa11.15□□□□□ -0.62
LIMS3-206ENST00000631420 HRH4Q9H3N8 390 aa11.15□□□□□ -0.62
LIMS3-206ENST00000631420 TMEM231Q9H6L2 316 aa11.15□□□□□ -0.62
LIMS3-206ENST00000631420 ZNF586Q9NXT0 402 aa11.15□□□□□ -0.62
LIMS3-206ENST00000631420 SIGLEC8Q9NYZ4 499 aa11.15□□□□□ -0.62
LIMS3-206ENST00000631420 TMEM14CQ9P0S9 112 aa11.15□□□□□ -0.62
LIMS3-206ENST00000631420 ZNF785A8K8V0 405 aa11.14□□□□□ -0.63
LIMS3-206ENST00000631420 RGS13O14921 159 aa11.14□□□□□ -0.63
LIMS3-206ENST00000631420 CXorf1O96002 111 aa11.14□□□□□ -0.63
LIMS3-206ENST00000631420 IGLC2P0DOY2 106 aa11.14□□□□□ -0.63
LIMS3-206ENST00000631420 GCHFRP30047 84 aa11.14□□□□□ -0.63
LIMS3-206ENST00000631420 PQLC2Q6ZP29 291 aa11.14□□□□□ -0.63
LIMS3-206ENST00000631420 TRAV1-1A0A0B4J248 108 aa11.13□□□□□ -0.63
LIMS3-206ENST00000631420 IZUMO1RA6ND01 250 aa11.13□□□□□ -0.63
LIMS3-206ENST00000631420 HIST1H1EP10412 219 aaKnown RBP11.13□□□□□ -0.63
LIMS3-206ENST00000631420 BMI1P35226 326 aa11.13□□□□□ -0.63
LIMS3-206ENST00000631420 GALR1P47211 349 aa11.13□□□□□ -0.63
LIMS3-206ENST00000631420 KRTAP21-3Q3LHN1 58 aa11.13□□□□□ -0.63
LIMS3-206ENST00000631420 CD300EQ496F6 205 aaPredicted RBP11.13□□□□□ -0.63
LIMS3-206ENST00000631420 GBGT1Q8N5D6 347 aa11.13□□□□□ -0.63
LIMS3-206ENST00000631420 STXBP6Q8NFX7 210 aa11.13□□□□□ -0.63
LIMS3-206ENST00000631420 BLNKQ8WV28 456 aa11.13□□□□□ -0.63
LIMS3-206ENST00000631420 RNF24Q9Y225 148 aa11.13□□□□□ -0.63
LIMS3-206ENST00000631420 TEX46H3BTG2 121 aa11.12□□□□□ -0.63
LIMS3-206ENST00000631420 NBEAP1P0C6P0 100 aa11.12□□□□□ -0.63
LIMS3-206ENST00000631420 IGLL1P15814 213 aa11.12□□□□□ -0.63
LIMS3-206ENST00000631420 UBE2L3P68036 154 aaKnown RBP11.12□□□□□ -0.63
LIMS3-206ENST00000631420 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.12□□□□□ -0.63
LIMS3-206ENST00000631420 TMEM61Q8N0U2 210 aa11.12□□□□□ -0.63
LIMS3-206ENST00000631420 LYPD6BQ8NI32 183 aa11.12□□□□□ -0.63
LIMS3-206ENST00000631420 GPR82Q96P67 336 aa11.12□□□□□ -0.63
LIMS3-206ENST00000631420 HELTA6NFD8 242 aa11.11□□□□□ -0.63
LIMS3-206ENST00000631420 ATF4P18848 351 aaPredicted RBP11.11□□□□□ -0.63
LIMS3-206ENST00000631420 RAB14P61106 215 aa11.11□□□□□ -0.63
LIMS3-206ENST00000631420 IGFL4Q6B9Z1 124 aa11.11□□□□□ -0.63
LIMS3-206ENST00000631420 WFDC3Q8IUB2 231 aa11.11□□□□□ -0.63
LIMS3-206ENST00000631420 SUN5Q8TC36 379 aa11.11□□□□□ -0.63
LIMS3-206ENST00000631420 TRBV19A0A075B6N1 114 aa11.11□□□□□ -0.63
LIMS3-206ENST00000631420 A0A087X0K7 114 aa11.11□□□□□ -0.63
LIMS3-206ENST00000631420 SLC17A3O00476 420 aa11.11□□□□□ -0.63
LIMS3-206ENST00000631420 NDUFB4O95168 129 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms