RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 SIRPDQ9H106 197 aa8.38□□□□□ -1.07
CUX1-221ENST00000622516 PTPN13Q12923 2485 aa8.38□□□□□ -1.07
CUX1-221ENST00000622516 F2Z2F3 143 aa8.37□□□□□ -1.07
CUX1-221ENST00000622516 NDUFA3O95167 84 aa8.37□□□□□ -1.07
CUX1-221ENST00000622516 IL4P05112 153 aa8.37□□□□□ -1.07
CUX1-221ENST00000622516 LMO4P61968 165 aa8.37□□□□□ -1.07
CUX1-221ENST00000622516 ARPC1AQ92747 370 aa8.37□□□□□ -1.07
CUX1-221ENST00000622516 FANCD2OSQ96PS1 177 aa8.37□□□□□ -1.07
CUX1-221ENST00000622516 TBX15Q96SF7 602 aa8.37□□□□□ -1.07
CUX1-221ENST00000622516 MRPL18Q9H0U6 180 aaKnown RBP8.37□□□□□ -1.07
CUX1-221ENST00000622516 ZNF586Q9NXT0 402 aa8.37□□□□□ -1.07
CUX1-221ENST00000622516 CDC42EP3Q9UKI2 254 aa8.37□□□□□ -1.07
CUX1-221ENST00000622516 EPDR1Q9UM22 224 aa8.37□□□□□ -1.07
CUX1-221ENST00000622516 OR2J3O76001 311 aa8.37□□□□□ -1.07
CUX1-221ENST00000622516 IGHV4-39P01824 125 aa8.37□□□□□ -1.07
CUX1-221ENST00000622516 SAA4P35542 130 aa8.37□□□□□ -1.07
CUX1-221ENST00000622516 PAX2Q02962 417 aa8.37□□□□□ -1.07
CUX1-221ENST00000622516 BTF3L4Q96K17 158 aa8.37□□□□□ -1.07
CUX1-221ENST00000622516 Q9H3A6 140 aa8.37□□□□□ -1.07
CUX1-221ENST00000622516 LY96Q9Y6Y9 160 aa8.37□□□□□ -1.07
CUX1-221ENST00000622516 LINC01548A6NM66 108 aa8.37□□□□□ -1.07
CUX1-221ENST00000622516 FCGR2BP31994 310 aaPredicted RBP8.37□□□□□ -1.07
CUX1-221ENST00000622516 MYCNOSP40205 109 aa8.37□□□□□ -1.07
CUX1-221ENST00000622516 UBE2G1P62253 170 aa8.37□□□□□ -1.07
CUX1-221ENST00000622516 ZNF664Q8N3J9 261 aa8.37□□□□□ -1.07
CUX1-221ENST00000622516 PIP4P2Q8N4L2 257 aa8.37□□□□□ -1.07
CUX1-221ENST00000622516 HSPB9Q9BQS6 159 aa8.37□□□□□ -1.07
CUX1-221ENST00000622516 FBN2P35556 2912 aa8.36□□□□□ -1.07
CUX1-221ENST00000622516 IGHV2-70DA0A0C4DH43 119 aa8.36□□□□□ -1.07
CUX1-221ENST00000622516 GNG7O60262 68 aa8.36□□□□□ -1.07
CUX1-221ENST00000622516 ZNF562Q6V9R5 426 aa8.36□□□□□ -1.07
CUX1-221ENST00000622516 LINC00322Q6ZN03 302 aaPredicted RBP8.36□□□□□ -1.07
CUX1-221ENST00000622516 NRGNQ92686 78 aa8.36□□□□□ -1.07
CUX1-221ENST00000622516 SNHG12Q9BXW3 62 aa8.36□□□□□ -1.07
CUX1-221ENST00000622516 OR2T8A6NH00 312 aa8.36□□□□□ -1.07
CUX1-221ENST00000622516 NDUFB8O95169 186 aa8.36□□□□□ -1.07
CUX1-221ENST00000622516 PRB1P04280 392 aa8.36□□□□□ -1.07
CUX1-221ENST00000622516 S100A7P31151 101 aa8.36□□□□□ -1.07
CUX1-221ENST00000622516 Q56UQ5 140 aa8.36□□□□□ -1.07
CUX1-221ENST00000622516 NUDT11Q96G61 164 aa8.36□□□□□ -1.07
CUX1-221ENST00000622516 TMUB1Q9BVT8 246 aa8.36□□□□□ -1.07
CUX1-221ENST00000622516 NAT8BQ9UHF3 227 aa8.36□□□□□ -1.07
CUX1-221ENST00000622516 ANKRD17O75179 2603 aaKnown RBP8.35□□□□□ -1.07
CUX1-221ENST00000622516 M0R143 59 aa8.35□□□□□ -1.07
CUX1-221ENST00000622516 ECSCRQ19T08 205 aa8.35□□□□□ -1.07
CUX1-221ENST00000622516 CCDC144NLQ6NUI1 221 aa8.35□□□□□ -1.07
CUX1-221ENST00000622516 ZNF491Q8N8L2 437 aa8.35□□□□□ -1.07
CUX1-221ENST00000622516 STXBP6Q8NFX7 210 aa8.35□□□□□ -1.07
CUX1-221ENST00000622516 AJUBAQ96IF1 538 aa8.35□□□□□ -1.07
CUX1-221ENST00000622516 OSTCQ9NRP0 149 aa8.35□□□□□ -1.07
CUX1-221ENST00000622516 SOX21Q9Y651 276 aaPredicted RBP8.35□□□□□ -1.07
CUX1-221ENST00000622516 IGHV7-81A0A0B4J1V7 117 aa8.35□□□□□ -1.07
CUX1-221ENST00000622516 YPEL3P61236 119 aaPredicted RBP8.35□□□□□ -1.07
CUX1-221ENST00000622516 BRD3OSQ6XYD6 125 aa8.35□□□□□ -1.07
CUX1-221ENST00000622516 TMEM219Q86XT9 240 aa8.35□□□□□ -1.07
CUX1-221ENST00000622516 EGR2P11161 476 aaPredicted RBP8.34□□□□□ -1.07
CUX1-221ENST00000622516 JOSD1Q15040 202 aaPredicted RBP8.34□□□□□ -1.07
CUX1-221ENST00000622516 RNF125Q96EQ8 232 aa8.34□□□□□ -1.07
CUX1-221ENST00000622516 CLEC5AQ9NY25 188 aa8.34□□□□□ -1.07
CUX1-221ENST00000622516 MRPL27Q9P0M9 148 aaKnown RBP8.34□□□□□ -1.07
CUX1-221ENST00000622516 LINC00527Q9UJ94 153 aa8.34□□□□□ -1.07
CUX1-221ENST00000622516 TP53TG3Q9ULZ0 132 aa8.34□□□□□ -1.07
CUX1-221ENST00000622516 NBPF19A0A087WUL8 3843 aa8.34□□□□□ -1.07
CUX1-221ENST00000622516 F8W735 103 aaPredicted RBP8.34□□□□□ -1.07
CUX1-221ENST00000622516 G3V318 75 aa8.34□□□□□ -1.07
CUX1-221ENST00000622516 PDLIM4P50479 330 aa8.34□□□□□ -1.07
CUX1-221ENST00000622516 PLP1P60201 277 aa8.34□□□□□ -1.07
CUX1-221ENST00000622516 COA6Q5JTJ3 125 aaKnown RBP8.34□□□□□ -1.07
CUX1-221ENST00000622516 GOLT1AQ6ZVE7 132 aa8.34□□□□□ -1.07
CUX1-221ENST00000622516 Q8N6K4 173 aa8.34□□□□□ -1.07
CUX1-221ENST00000622516 Q8N9W7 124 aa8.34□□□□□ -1.07
CUX1-221ENST00000622516 IGLV11-55A0A075B6I3 123 aa8.34□□□□□ -1.08
CUX1-221ENST00000622516 M0R3E3 92 aa8.34□□□□□ -1.08
CUX1-221ENST00000622516 TCRAP04437 139 aa8.34□□□□□ -1.08
CUX1-221ENST00000622516 GZMBP10144 247 aa8.34□□□□□ -1.08
CUX1-221ENST00000622516 TMEM183BQ1AE95 376 aa8.34□□□□□ -1.08
CUX1-221ENST00000622516 CIARTQ8N365 385 aaPredicted RBP8.34□□□□□ -1.08
CUX1-221ENST00000622516 DOPEY2Q9Y3R5 2298 aa8.33□□□□□ -1.08
CUX1-221ENST00000622516 IGHV4-61A0A0C4DH41 118 aa8.33□□□□□ -1.08
CUX1-221ENST00000622516 CBY3A6NI87 242 aa8.33□□□□□ -1.08
CUX1-221ENST00000622516 TCF21O43680 179 aa8.33□□□□□ -1.08
CUX1-221ENST00000622516 FAM106CPP0CH98 169 aa8.33□□□□□ -1.08
CUX1-221ENST00000622516 CRISP2P16562 243 aa8.33□□□□□ -1.08
CUX1-221ENST00000622516 CAMPP49913 170 aa8.33□□□□□ -1.08
CUX1-221ENST00000622516 UBE2E1P51965 193 aa8.33□□□□□ -1.08
CUX1-221ENST00000622516 TCF24Q7RTU0 167 aa8.33□□□□□ -1.08
CUX1-221ENST00000622516 S100A7AQ86SG5 101 aa8.33□□□□□ -1.08
CUX1-221ENST00000622516 PRNTQ86SH4 94 aa8.33□□□□□ -1.08
CUX1-221ENST00000622516 MS4A10Q96PG2 267 aa8.33□□□□□ -1.08
CUX1-221ENST00000622516 CENPVL3A0A0U1RRI6 287 aa8.33□□□□□ -1.08
CUX1-221ENST00000622516 VWC2LB2RUY7 222 aa8.33□□□□□ -1.08
CUX1-221ENST00000622516 MINOS1Q5TGZ0 78 aa8.33□□□□□ -1.08
CUX1-221ENST00000622516 IGFL4Q6B9Z1 124 aa8.33□□□□□ -1.08
CUX1-221ENST00000622516 GBGT1Q8N5D6 347 aa8.33□□□□□ -1.08
CUX1-221ENST00000622516 CHRDL1Q9BU40 450 aa8.33□□□□□ -1.08
CUX1-221ENST00000622516 SSBP4Q9BWG4 385 aaPredicted RBP8.33□□□□□ -1.08
CUX1-221ENST00000622516 C21orf62Q9NYP8 219 aa8.33□□□□□ -1.08
CUX1-221ENST00000622516 MINOS1-NBL1R4GNA1 71 aa8.33□□□□□ -1.08
CUX1-221ENST00000622516 TLN2Q9Y4G6 2542 aa8.33□□□□□ -1.08
CUX1-221ENST00000622516 SMIM27A0A1W2PRY6 76 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 137.1 ms