RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 HIGD1AQ9Y241 93 aa16.76■□□□□ 0.27
LIME1-210ENST00000621325 IGHV3OR16-10A0A075B7F0 116 aa16.75■□□□□ 0.27
LIME1-210ENST00000621325 TRAV34A0A0B4J273 112 aa16.75■□□□□ 0.27
LIME1-210ENST00000621325 EGR2P11161 476 aaPredicted RBP16.75■□□□□ 0.27
LIME1-210ENST00000621325 MYCNOSP40205 109 aa16.75■□□□□ 0.27
LIME1-210ENST00000621325 FAM168AQ92567 244 aa16.75■□□□□ 0.27
LIME1-210ENST00000621325 RNASE7Q9H1E1 156 aaKnown RBP16.75■□□□□ 0.27
LIME1-210ENST00000621325 ZNF462Q96JM2 2506 aa16.75■□□□□ 0.27
LIME1-210ENST00000621325 IGLV11-55A0A075B6I3 123 aa16.75■□□□□ 0.27
LIME1-210ENST00000621325 IGHV7-81A0A0B4J1V7 117 aa16.75■□□□□ 0.27
LIME1-210ENST00000621325 NPIPB5A8MRT5 1133 aa16.75■□□□□ 0.27
LIME1-210ENST00000621325 NUPR1O60356 82 aa16.75■□□□□ 0.27
LIME1-210ENST00000621325 FAM106CPP0CH98 169 aa16.75■□□□□ 0.27
LIME1-210ENST00000621325 STXBP6Q8NFX7 210 aa16.75■□□□□ 0.27
LIME1-210ENST00000621325 BBC3Q96PG8 261 aaPredicted RBP16.75■□□□□ 0.27
LIME1-210ENST00000621325 CRYBG3Q68DQ2 2970 aa16.74■□□□□ 0.27
LIME1-210ENST00000621325 MAP1AP78559 2803 aaPredicted RBP16.74■□□□□ 0.27
LIME1-210ENST00000621325 CENPVL3A0A0U1RRI6 287 aa16.74■□□□□ 0.27
LIME1-210ENST00000621325 NBEAP1P0C6P0 100 aa16.74■□□□□ 0.27
LIME1-210ENST00000621325 TMEM256Q8N2U0 113 aa16.74■□□□□ 0.27
LIME1-210ENST00000621325 CELSR1Q9NYQ6 3014 aa16.74■□□□□ 0.27
LIME1-210ENST00000621325 NPFFO15130 113 aa16.74■□□□□ 0.27
LIME1-210ENST00000621325 HSPB9Q9BQS6 159 aa16.74■□□□□ 0.27
LIME1-210ENST00000621325 SLC25A39Q9BZJ4 359 aaPredicted RBP16.74■□□□□ 0.27
LIME1-210ENST00000621325 V9GYV3 84 aa16.74■□□□□ 0.27
LIME1-210ENST00000621325 PEX7O00628 323 aa16.73■□□□□ 0.27
LIME1-210ENST00000621325 ACTL10Q5JWF8 245 aa16.73■□□□□ 0.27
LIME1-210ENST00000621325 TTC9CQ8N5M4 171 aa16.73■□□□□ 0.27
LIME1-210ENST00000621325 ZFHX3Q15911 3703 aa16.73■□□□□ 0.27
LIME1-210ENST00000621325 MGST1P10620 155 aaKnown RBP16.72■□□□□ 0.27
LIME1-210ENST00000621325 OR4C5Q8NGB2 326 aa16.72■□□□□ 0.27
LIME1-210ENST00000621325 C10orf105Q8TEF2 133 aa16.72■□□□□ 0.27
LIME1-210ENST00000621325 PIMREGQ9BSJ6 248 aa16.72■□□□□ 0.27
LIME1-210ENST00000621325 IL36BQ9NZH7 164 aa16.72■□□□□ 0.27
LIME1-210ENST00000621325 MRPL27Q9P0M9 148 aaKnown RBP16.72■□□□□ 0.27
LIME1-210ENST00000621325 CDC42EP3Q9UKI2 254 aa16.72■□□□□ 0.27
LIME1-210ENST00000621325 TOMM40O96008 361 aa16.72■□□□□ 0.27
LIME1-210ENST00000621325 IGHV3-23P01764 117 aa16.72■□□□□ 0.27
LIME1-210ENST00000621325 Q5PR19 223 aa16.72■□□□□ 0.27
LIME1-210ENST00000621325 TEX43Q6ZNM6 134 aa16.72■□□□□ 0.27
LIME1-210ENST00000621325 SGK494Q96LW2 274 aa16.72■□□□□ 0.27
LIME1-210ENST00000621325 LOC102724200A0A096LPH7 203 aaPredicted RBP16.71■□□□□ 0.27
LIME1-210ENST00000621325 PGPA6NDG6 321 aa16.71■□□□□ 0.27
LIME1-210ENST00000621325 SH2D7A6NKC9 451 aaPredicted RBP16.71■□□□□ 0.27
LIME1-210ENST00000621325 F8W735 103 aaPredicted RBP16.71■□□□□ 0.27
LIME1-210ENST00000621325 ISLRO14498 428 aa16.71■□□□□ 0.27
LIME1-210ENST00000621325 ATP5J2P56134 94 aa16.71■□□□□ 0.27
LIME1-210ENST00000621325 RPL19P84098 196 aaKnown RBP16.71■□□□□ 0.27
LIME1-210ENST00000621325 UNQ5815/PRO19632Q6UWF5 114 aa16.71■□□□□ 0.27
LIME1-210ENST00000621325 BCL6BQ8N143 479 aaPredicted RBP16.71■□□□□ 0.27
LIME1-210ENST00000621325 NRGNQ92686 78 aa16.71■□□□□ 0.27
LIME1-210ENST00000621325 BMI1P35226 326 aa16.71■□□□□ 0.27
LIME1-210ENST00000621325 CNN1P51911 297 aaKnown RBP16.71■□□□□ 0.27
LIME1-210ENST00000621325 RPL15P61313 204 aaKnown RBP16.71■□□□□ 0.27
LIME1-210ENST00000621325 S100A7AQ86SG5 101 aa16.71■□□□□ 0.27
LIME1-210ENST00000621325 SLC25A5P05141 298 aaKnown RBP16.7■□□□□ 0.26
LIME1-210ENST00000621325 PAX8Q06710 450 aa16.7■□□□□ 0.26
LIME1-210ENST00000621325 ZNF491Q8N8L2 437 aa16.7■□□□□ 0.26
LIME1-210ENST00000621325 EPDR1Q9UM22 224 aa16.7■□□□□ 0.26
LIME1-210ENST00000621325 IGHV4-30-2A0A087WSY4 118 aa16.7■□□□□ 0.26
LIME1-210ENST00000621325 OR2J3O76001 311 aa16.7■□□□□ 0.26
LIME1-210ENST00000621325 TMEM183BQ1AE95 376 aa16.7■□□□□ 0.26
LIME1-210ENST00000621325 GNG7O60262 68 aa16.69■□□□□ 0.26
LIME1-210ENST00000621325 IL4P05112 153 aa16.69■□□□□ 0.26
LIME1-210ENST00000621325 FRMD6-AS1P0C7T7 363 aa16.69■□□□□ 0.26
LIME1-210ENST00000621325 VAMP8Q9BV40 100 aa16.69■□□□□ 0.26
LIME1-210ENST00000621325 ZNF586Q9NXT0 402 aa16.69■□□□□ 0.26
LIME1-210ENST00000621325 C1RLQ9NZP8 487 aa16.69■□□□□ 0.26
LIME1-210ENST00000621325 VWC2LB2RUY7 222 aa16.69■□□□□ 0.26
LIME1-210ENST00000621325 HLA-DRB1P01911 266 aa16.69■□□□□ 0.26
LIME1-210ENST00000621325 CELSR2Q9HCU4 2923 aa16.69■□□□□ 0.26
LIME1-210ENST00000621325 FAM208BQ5VWN6 2430 aa16.69■□□□□ 0.26
LIME1-210ENST00000621325 BRD3OSQ6XYD6 125 aa16.68■□□□□ 0.26
LIME1-210ENST00000621325 RNF125Q96EQ8 232 aa16.68■□□□□ 0.26
LIME1-210ENST00000621325 Q9H3A6 140 aa16.68■□□□□ 0.26
LIME1-210ENST00000621325 CSMD2Q7Z408 3487 aa16.68■□□□□ 0.26
LIME1-210ENST00000621325 LINC01548A6NM66 108 aa16.68■□□□□ 0.26
LIME1-210ENST00000621325 MFAP4P55083 255 aa16.68■□□□□ 0.26
LIME1-210ENST00000621325 Q56UQ5 140 aa16.68■□□□□ 0.26
LIME1-210ENST00000621325 OCIAD2Q56VL3 154 aa16.68■□□□□ 0.26
LIME1-210ENST00000621325 Q6ZWC4 215 aa16.68■□□□□ 0.26
LIME1-210ENST00000621325 BAGE2Q86Y30 109 aa16.68■□□□□ 0.26
LIME1-210ENST00000621325 WFDC12Q8WWY7 111 aa16.68■□□□□ 0.26
LIME1-210ENST00000621325 OSTCQ9NRP0 149 aa16.68■□□□□ 0.26
LIME1-210ENST00000621325 TRAPPC1Q9Y5R8 145 aa16.68■□□□□ 0.26
LIME1-210ENST00000621325 COX11Q9Y6N1 276 aa16.68■□□□□ 0.26
LIME1-210ENST00000621325 RPEL1Q2QD12 228 aa16.67■□□□□ 0.26
LIME1-210ENST00000621325 OR8I2Q8N0Y5 310 aa16.67■□□□□ 0.26
LIME1-210ENST00000621325 VN1R17PQ8TDU5 208 aa16.67■□□□□ 0.26
LIME1-210ENST00000621325 SHANK2-AS3Q9BTD1 123 aa16.67■□□□□ 0.26
LIME1-210ENST00000621325 C21orf62Q9NYP8 219 aa16.67■□□□□ 0.26
LIME1-210ENST00000621325 GOSR1O95249 250 aa16.67■□□□□ 0.26
LIME1-210ENST00000621325 ECSCRQ19T08 205 aa16.67■□□□□ 0.26
LIME1-210ENST00000621325 IBA57Q5T440 356 aaKnown RBP16.67■□□□□ 0.26
LIME1-210ENST00000621325 ATP6V0E1O15342 81 aa16.66■□□□□ 0.26
LIME1-210ENST00000621325 CA1P00915 261 aaPredicted RBP16.66■□□□□ 0.26
LIME1-210ENST00000621325 TCL1AP56279 114 aa16.66■□□□□ 0.26
LIME1-210ENST00000621325 C17orf77Q96MU5 243 aa16.66■□□□□ 0.26
LIME1-210ENST00000621325 TMUB1Q9BVT8 246 aa16.66■□□□□ 0.26
LIME1-210ENST00000621325 CST9LQ9H4G1 147 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms