RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 TMEM167AQ8TBQ9 72 aa3.6□□□□□ -1.83
VPS29-212ENST00000621131 PCNPQ8WW12 178 aaKnown RBP3.6□□□□□ -1.83
VPS29-212ENST00000621131 ST6GALNAC6Q969X2 333 aa3.6□□□□□ -1.83
VPS29-212ENST00000621131 RBMXL1Q96E39 390 aaKnown RBP3.6□□□□□ -1.83
VPS29-212ENST00000621131 SLC35E1Q96K37 410 aa3.6□□□□□ -1.83
VPS29-212ENST00000621131 OR4C12Q96R67 309 aa3.6□□□□□ -1.83
VPS29-212ENST00000621131 BPESC1Q9GZL8 116 aa3.6□□□□□ -1.83
VPS29-212ENST00000621131 TREM1Q9NP99 234 aa3.6□□□□□ -1.83
VPS29-212ENST00000621131 SIRT7Q9NRC8 400 aa3.6□□□□□ -1.83
VPS29-212ENST00000621131 PRO0461Q9UI25 63 aa3.6□□□□□ -1.83
VPS29-212ENST00000621131 ZNF256Q9Y2P7 627 aaPredicted RBP3.6□□□□□ -1.83
VPS29-212ENST00000621131 ARFGEF3Q5TH69 2177 aa3.6□□□□□ -1.83
VPS29-212ENST00000621131 KMT2CQ8NEZ4 4911 aaKnown RBP3.6□□□□□ -1.83
VPS29-212ENST00000621131 PRKDCP78527 4128 aaKnown RBP3.59□□□□□ -1.83
VPS29-212ENST00000621131 FNDC10F2Z333 226 aa3.59□□□□□ -1.83
VPS29-212ENST00000621131 FCN3O75636 299 aa3.59□□□□□ -1.83
VPS29-212ENST00000621131 CNIH1O95406 144 aa3.59□□□□□ -1.83
VPS29-212ENST00000621131 TMEM50AO95807 157 aa3.59□□□□□ -1.83
VPS29-212ENST00000621131 MOSP00540 346 aa3.59□□□□□ -1.83
VPS29-212ENST00000621131 IGKV1-16P04430 117 aa3.59□□□□□ -1.83
VPS29-212ENST00000621131 TAGLN2P37802 199 aaKnown RBP3.59□□□□□ -1.83
VPS29-212ENST00000621131 RPL27AP46776 148 aaKnown RBP3.59□□□□□ -1.83
VPS29-212ENST00000621131 PPT1P50897 306 aa3.59□□□□□ -1.83
VPS29-212ENST00000621131 UBE2E1P51965 193 aa3.59□□□□□ -1.83
VPS29-212ENST00000621131 MMDQ15546 238 aa3.59□□□□□ -1.83
VPS29-212ENST00000621131 TNXAQ16473 311 aa3.59□□□□□ -1.83
VPS29-212ENST00000621131 Q1RN00 199 aa3.59□□□□□ -1.83
VPS29-212ENST00000621131 C2orf83Q53S99 150 aa3.59□□□□□ -1.83
VPS29-212ENST00000621131 BTNL8Q6UX41 500 aa3.59□□□□□ -1.83
VPS29-212ENST00000621131 OR4P4Q8NGL7 312 aa3.59□□□□□ -1.83
VPS29-212ENST00000621131 OR1L6Q8NGR2 347 aa3.59□□□□□ -1.83
VPS29-212ENST00000621131 MRAPQ8TCY5 172 aa3.59□□□□□ -1.83
VPS29-212ENST00000621131 C10orf105Q8TEF2 133 aa3.59□□□□□ -1.83
VPS29-212ENST00000621131 WDR61Q9GZS3 305 aaKnown RBP3.59□□□□□ -1.83
VPS29-212ENST00000621131 EIF5A2Q9GZV4 153 aaKnown RBP3.59□□□□□ -1.83
VPS29-212ENST00000621131 SH3BGRL3Q9H299 93 aa3.59□□□□□ -1.83
VPS29-212ENST00000621131 SMDT1Q9H4I9 107 aa3.59□□□□□ -1.83
VPS29-212ENST00000621131 WFDC1Q9HC57 220 aa3.59□□□□□ -1.83
VPS29-212ENST00000621131 NPVFQ9HCQ7 196 aa3.59□□□□□ -1.83
VPS29-212ENST00000621131 METTL1Q9UBP6 276 aaKnown RBP3.59□□□□□ -1.83
VPS29-212ENST00000621131 USF3Q68DE3 2245 aa3.59□□□□□ -1.84
VPS29-212ENST00000621131 HRNRQ86YZ3 2850 aaPredicted RBP3.58□□□□□ -1.84
VPS29-212ENST00000621131 KIAA2026Q5HYC2 2103 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.58□□□□□ -1.842e-11■■■■■ 31.7
VPS29-212ENST00000621131 SVEP1Q4LDE5 3571 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 SONP18583 2426 aaKnown RBP3.58□□□□□ -1.84
VPS29-212ENST00000621131 IGHV3-72A0A0B4J1Y9 119 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 TRAV3A0A0B4J244 114 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 TEX50A0A1B0GTY4 177 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 A0A1W2PPV4 95 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 ODF3BA8MYP8 253 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 B4DSR2 109 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 INS-IGF2F8WCM5 200 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 NBR2O15453 112 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 VENTXO95231 258 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 CA2P00918 260 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 IGKV1D-33P01593 117 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 IGKV1-33P01594 117 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 FABP1P07148 127 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 GPX4P36969 197 aaPredicted RBP3.58□□□□□ -1.84
VPS29-212ENST00000621131 OPRK1P41145 380 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 VDAC2P45880 294 aaPredicted RBP3.58□□□□□ -1.84
VPS29-212ENST00000621131 LYZP61626 148 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 RUNX1Q01196 453 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 KLRD1Q13241 179 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 PSG5Q15238 335 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 PRSS8Q16651 343 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 CLEC12BQ2HXU8 276 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 S100A7AQ86SG5 101 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 PPP1R27Q86WC6 154 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 LRRC75A-AS1Q8N1F1 130 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 C11orf42Q8N5U0 333 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 NANPQ8TBE9 248 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 RNASEH2CQ8TDP1 164 aaKnown RBP3.58□□□□□ -1.84
VPS29-212ENST00000621131 NRGNQ92686 78 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 MALSU1Q96EH3 234 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 BSCL2Q96G97 398 aaPredicted RBP3.58□□□□□ -1.84
VPS29-212ENST00000621131 RNF2Q99496 336 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 RASL11BQ9BPW5 248 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 RSG1Q9BU20 258 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 NPCDR1Q9BY65 106 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 ACTR3CQ9C0K3 210 aaPredicted RBP3.58□□□□□ -1.84
VPS29-212ENST00000621131 SIRPDQ9H106 197 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 ZNF430Q9H8G1 570 aaPredicted RBP3.58□□□□□ -1.84
VPS29-212ENST00000621131 NDUFA4L2Q9NRX3 87 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 SLC39A9Q9NUM3 307 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 ANAPC11Q9NYG5 84 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 ZNRD1Q9P1U0 126 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 HILPDAQ9Y5L2 63 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 YLPM1P49750 1951 aaKnown RBP3.58□□□□□ -1.84
VPS29-212ENST00000621131 HIVEP2P31629 2446 aa3.58□□□□□ -1.84
VPS29-212ENST00000621131 CTXND1A0A1B0GTU2 59 aa3.57□□□□□ -1.84
VPS29-212ENST00000621131 A0A1W2PRD5 423 aa3.57□□□□□ -1.84
VPS29-212ENST00000621131 A0A1W2PRF3 423 aa3.57□□□□□ -1.84
VPS29-212ENST00000621131 A0A1W2PRM7 423 aa3.57□□□□□ -1.84
VPS29-212ENST00000621131 MAP1LC3B2A6NCE7 125 aa3.57□□□□□ -1.84
VPS29-212ENST00000621131 NCBP2LA6PVI3 153 aaKnown RBP3.57□□□□□ -1.84
VPS29-212ENST00000621131 SRRM4A7MD48 611 aaKnown RBP3.57□□□□□ -1.84
VPS29-212ENST00000621131 F8W036 122 aa3.57□□□□□ -1.84
VPS29-212ENST00000621131 LY6LH3BQJ8 138 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms