RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 TEX43Q6ZNM6 134 aa9.21□□□□□ -0.94
CLIP1-219ENST00000620786 LHFPL1Q86WI0 220 aa9.21□□□□□ -0.94
CLIP1-219ENST00000620786 NPC2P61916 151 aa9.21□□□□□ -0.94
CLIP1-219ENST00000620786 CD300EQ496F6 205 aaPredicted RBP9.21□□□□□ -0.94
CLIP1-219ENST00000620786 C10orf126Q8N4M7 172 aa9.21□□□□□ -0.94
CLIP1-219ENST00000620786 JPT2Q9H910 190 aa9.21□□□□□ -0.94
CLIP1-219ENST00000620786 ZNF562Q6V9R5 426 aa9.21□□□□□ -0.94
CLIP1-219ENST00000620786 RNASE2P10153 161 aaKnown RBP9.2□□□□□ -0.94
CLIP1-219ENST00000620786 NMSQ5H8A3 153 aa9.2□□□□□ -0.94
CLIP1-219ENST00000620786 ATP5L2Q7Z4Y8 100 aa9.2□□□□□ -0.94
CLIP1-219ENST00000620786 PLNP26678 52 aa9.2□□□□□ -0.94
CLIP1-219ENST00000620786 FOXL1Q12952 345 aa9.2□□□□□ -0.94
CLIP1-219ENST00000620786 MBD3L1Q8WWY6 194 aa9.2□□□□□ -0.94
CLIP1-219ENST00000620786 ASXL3Q9C0F0 2248 aa9.2□□□□□ -0.94
CLIP1-219ENST00000620786 A0A087WWL8 130 aa9.2□□□□□ -0.94
CLIP1-219ENST00000620786 G3V318 75 aa9.2□□□□□ -0.94
CLIP1-219ENST00000620786 PROK2Q9HC23 129 aa9.2□□□□□ -0.94
CLIP1-219ENST00000620786 NRN1Q9NPD7 142 aa9.2□□□□□ -0.94
CLIP1-219ENST00000620786 KIAA1671Q9BY89 1806 aa9.2□□□□□ -0.94
CLIP1-219ENST00000620786 D6R8Y8 96 aa9.2□□□□□ -0.94
CLIP1-219ENST00000620786 CDK2AP2O75956 126 aa9.2□□□□□ -0.94
CLIP1-219ENST00000620786 NTF4P34130 210 aa9.2□□□□□ -0.94
CLIP1-219ENST00000620786 SS18Q15532 418 aa9.2□□□□□ -0.94
CLIP1-219ENST00000620786 C14orf178Q8N769 122 aaPredicted RBP9.2□□□□□ -0.94
CLIP1-219ENST00000620786 C1orf159Q96HA4 380 aa9.2□□□□□ -0.94
CLIP1-219ENST00000620786 TYMSP04818 313 aa9.2□□□□□ -0.94
CLIP1-219ENST00000620786 PRR31Q5SQ13 230 aa9.2□□□□□ -0.94
CLIP1-219ENST00000620786 NIT1Q86X76 327 aa9.2□□□□□ -0.94
CLIP1-219ENST00000620786 GNB1LQ9BYB4 327 aa9.2□□□□□ -0.94
CLIP1-219ENST00000620786 AMBPP02760 352 aa9.19□□□□□ -0.94
CLIP1-219ENST00000620786 MST1LQ2TV78 715 aa9.19□□□□□ -0.94
CLIP1-219ENST00000620786 ZMAT4Q9H898 229 aa9.19□□□□□ -0.94
CLIP1-219ENST00000620786 LINC01549A6NIU2 74 aa9.19□□□□□ -0.94
CLIP1-219ENST00000620786 SRSF3P84103 164 aaKnown RBP9.19□□□□□ -0.94
CLIP1-219ENST00000620786 RASL10AQ92737 203 aa9.19□□□□□ -0.94
CLIP1-219ENST00000620786 FAM215AQ9Y5M1 114 aa9.19□□□□□ -0.94
CLIP1-219ENST00000620786 RFNGQ9Y644 331 aa9.19□□□□□ -0.94
CLIP1-219ENST00000620786 FRMPD3Q5JV73 1810 aa9.19□□□□□ -0.94
CLIP1-219ENST00000620786 CHCHD1Q96BP2 118 aaKnown RBP9.19□□□□□ -0.94
CLIP1-219ENST00000620786 A0A1W2PPI3 338 aa9.19□□□□□ -0.94
CLIP1-219ENST00000620786 DUX4L9Q6RFH8 374 aaPredicted RBP9.19□□□□□ -0.94
CLIP1-219ENST00000620786 TMEM170AQ8WVE7 144 aa9.19□□□□□ -0.94
CLIP1-219ENST00000620786 CSTL1Q9H114 145 aa9.19□□□□□ -0.94
CLIP1-219ENST00000620786 TMEM95Q3KNT9 176 aa9.18□□□□□ -0.94
CLIP1-219ENST00000620786 LYPD1Q8N2G4 141 aa9.18□□□□□ -0.94
CLIP1-219ENST00000620786 A0A1B0GWB2 263 aa9.18□□□□□ -0.94
CLIP1-219ENST00000620786 VCYO14598 125 aa9.18□□□□□ -0.94
CLIP1-219ENST00000620786 NDUFB8O95169 186 aa9.18□□□□□ -0.94
CLIP1-219ENST00000620786 TMEM14EPQ6UXP3 125 aa9.18□□□□□ -0.94
CLIP1-219ENST00000620786 MRAPQ8TCY5 172 aa9.18□□□□□ -0.94
CLIP1-219ENST00000620786 AGMATQ9BSE5 352 aa9.18□□□□□ -0.94
CLIP1-219ENST00000620786 CACNA1IQ9P0X4 2223 aa9.18□□□□□ -0.94
CLIP1-219ENST00000620786 PAX4O43316 350 aa9.18□□□□□ -0.94
CLIP1-219ENST00000620786 DKK1O94907 266 aa9.18□□□□□ -0.94
CLIP1-219ENST00000620786 MLANAQ16655 118 aa9.18□□□□□ -0.94
CLIP1-219ENST00000620786 Q6ZR03 302 aa9.18□□□□□ -0.94
CLIP1-219ENST00000620786 WISP1O95388 367 aa9.18□□□□□ -0.94
CLIP1-219ENST00000620786 C6orf226Q5I0X4 101 aa9.18□□□□□ -0.94
CLIP1-219ENST00000620786 SHANK2-AS3Q9BTD1 123 aa9.18□□□□□ -0.94
CLIP1-219ENST00000620786 EREGO14944 169 aa9.18□□□□□ -0.94
CLIP1-219ENST00000620786 QRFPP83859 136 aa9.18□□□□□ -0.94
CLIP1-219ENST00000620786 DEFB113Q30KQ7 82 aa9.18□□□□□ -0.94
CLIP1-219ENST00000620786 SFTA2Q6UW10 78 aa9.18□□□□□ -0.94
CLIP1-219ENST00000620786 IFI27L1Q96BM0 104 aa9.17□□□□□ -0.94
CLIP1-219ENST00000620786 TANC1Q9C0D5 1861 aa9.17□□□□□ -0.94
CLIP1-219ENST00000620786 SPINK13Q1W4C9 94 aa9.17□□□□□ -0.94
CLIP1-219ENST00000620786 HS3ST6Q96QI5 342 aa9.17□□□□□ -0.94
CLIP1-219ENST00000620786 RP1P56715 2156 aa9.17□□□□□ -0.94
CLIP1-219ENST00000620786 TRAV13-1A0A0B4J241 112 aa9.17□□□□□ -0.94
CLIP1-219ENST00000620786 LOXP28300 417 aaPredicted RBP9.17□□□□□ -0.94
CLIP1-219ENST00000620786 SRSF4Q08170 494 aaKnown RBP9.17□□□□□ -0.94
CLIP1-219ENST00000620786 FAM120AOSQ5T036 256 aa9.17□□□□□ -0.94
CLIP1-219ENST00000620786 ZNF833PQ6ZTB9 187 aa9.17□□□□□ -0.94
CLIP1-219ENST00000620786 KLK9Q9UKQ9 250 aa9.17□□□□□ -0.94
CLIP1-219ENST00000620786 C15orf62A8K5M9 175 aa9.17□□□□□ -0.94
CLIP1-219ENST00000620786 LINC00587B1AMM8 73 aa9.17□□□□□ -0.94
CLIP1-219ENST00000620786 ITGB1BP1O14713 200 aa9.17□□□□□ -0.94
CLIP1-219ENST00000620786 TCTEX1D4Q5JR98 221 aa9.17□□□□□ -0.94
CLIP1-219ENST00000620786 OR2K2Q8NGT1 345 aa9.17□□□□□ -0.94
CLIP1-219ENST00000620786 GATD1Q8NB37 220 aa9.16□□□□□ -0.94
CLIP1-219ENST00000620786 Q6ZS49 121 aa9.16□□□□□ -0.94
CLIP1-219ENST00000620786 KNCNA6PVL3 124 aa9.16□□□□□ -0.94
CLIP1-219ENST00000620786 F8WEM9 126 aa9.16□□□□□ -0.94
CLIP1-219ENST00000620786 SLC25A2Q9BXI2 301 aa9.16□□□□□ -0.94
CLIP1-219ENST00000620786 NHP2Q9NX24 153 aaKnown RBP9.16□□□□□ -0.94
CLIP1-219ENST00000620786 ICE1Q9Y2F5 2266 aa9.16□□□□□ -0.94
CLIP1-219ENST00000620786 SPTA1P02549 2419 aa9.16□□□□□ -0.94
CLIP1-219ENST00000620786 GAGE12JA6NER3 117 aa9.16□□□□□ -0.94
CLIP1-219ENST00000620786 M0R2P5 195 aa9.16□□□□□ -0.94
CLIP1-219ENST00000620786 CGB3P0DN86 165 aa9.16□□□□□ -0.94
CLIP1-219ENST00000620786 GAGE1Q13065 139 aa9.16□□□□□ -0.94
CLIP1-219ENST00000620786 GAGE4Q13068 117 aa9.16□□□□□ -0.94
CLIP1-219ENST00000620786 GAGE5Q13069 117 aa9.16□□□□□ -0.94
CLIP1-219ENST00000620786 GAGE13Q4V321 117 aa9.16□□□□□ -0.94
CLIP1-219ENST00000620786 RLFQ13129 1914 aa9.16□□□□□ -0.94
CLIP1-219ENST00000620786 ARHGEF17Q96PE2 2063 aaPredicted RBP9.16□□□□□ -0.94
CLIP1-219ENST00000620786 TRAV8-1A0A0A6YYK1 113 aa9.15□□□□□ -0.94
CLIP1-219ENST00000620786 TEX36Q5VZQ5 186 aa9.15□□□□□ -0.94
CLIP1-219ENST00000620786 DMRT1Q9Y5R6 373 aa9.15□□□□□ -0.94
CLIP1-219ENST00000620786 IGHV3-16A0A0C4DH30 117 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms