RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 MYOD1P15172 320 aa8.7□□□□□ -1.02
UPF3A-212ENST00000619079 MEF2CQ06413 473 aaPredicted RBP8.7□□□□□ -1.02
UPF3A-212ENST00000619079 TCTEX1D4Q5JR98 221 aa8.7□□□□□ -1.02
UPF3A-212ENST00000619079 C16orf54Q6UWD8 224 aa8.7□□□□□ -1.02
UPF3A-212ENST00000619079 LINC00322Q6ZN03 302 aaPredicted RBP8.7□□□□□ -1.02
UPF3A-212ENST00000619079 OR10W1Q8NGF6 305 aa8.7□□□□□ -1.02
UPF3A-212ENST00000619079 BLNKQ8WV28 456 aa8.7□□□□□ -1.02
UPF3A-212ENST00000619079 ITLN1Q8WWA0 313 aa8.7□□□□□ -1.02
UPF3A-212ENST00000619079 SPATA25Q9BR10 227 aa8.7□□□□□ -1.02
UPF3A-212ENST00000619079 INS-IGF2F8WCM5 200 aa8.7□□□□□ -1.02
UPF3A-212ENST00000619079 GOSR1O95249 250 aa8.7□□□□□ -1.02
UPF3A-212ENST00000619079 MEOX1P50221 254 aa8.7□□□□□ -1.02
UPF3A-212ENST00000619079 PRR31Q5SQ13 230 aa8.7□□□□□ -1.02
UPF3A-212ENST00000619079 MTURNQ8N3F0 131 aa8.7□□□□□ -1.02
UPF3A-212ENST00000619079 OR8A1Q8NGG7 326 aa8.7□□□□□ -1.02
UPF3A-212ENST00000619079 VGLL1Q99990 258 aa8.7□□□□□ -1.02
UPF3A-212ENST00000619079 TIMM8AO60220 97 aaPredicted RBP8.69□□□□□ -1.02
UPF3A-212ENST00000619079 FSTL3O95633 263 aa8.69□□□□□ -1.02
UPF3A-212ENST00000619079 CELA3AP09093 270 aa8.69□□□□□ -1.02
UPF3A-212ENST00000619079 Q6AWC8 147 aa8.69□□□□□ -1.02
UPF3A-212ENST00000619079 PATE2Q6UY27 113 aa8.69□□□□□ -1.02
UPF3A-212ENST00000619079 LINC00305Q7Z4B0 112 aa8.69□□□□□ -1.02
UPF3A-212ENST00000619079 TLN1Q9Y490 2541 aaKnown RBP8.69□□□□□ -1.02
UPF3A-212ENST00000619079 ZFYVE26Q68DK2 2539 aa8.69□□□□□ -1.02
UPF3A-212ENST00000619079 IGHV3-13P01766 116 aa8.69□□□□□ -1.02
UPF3A-212ENST00000619079 TCRAP04437 139 aa8.69□□□□□ -1.02
UPF3A-212ENST00000619079 MLANAQ16655 118 aa8.69□□□□□ -1.02
UPF3A-212ENST00000619079 THAP8Q8NA92 274 aa8.69□□□□□ -1.02
UPF3A-212ENST00000619079 PIFOQ8TCI5 191 aa8.69□□□□□ -1.02
UPF3A-212ENST00000619079 HIGD1BQ9P298 99 aa8.69□□□□□ -1.02
UPF3A-212ENST00000619079 TSSC4Q9Y5U2 329 aaPredicted RBP8.69□□□□□ -1.02
UPF3A-212ENST00000619079 SELENOKQ9Y6D0 94 aa8.69□□□□□ -1.02
UPF3A-212ENST00000619079 SUB1P53999 127 aaKnown RBP eCLIP8.68□□□□□ -1.02
UPF3A-212ENST00000619079 C1orf229Q6ZS94 237 aaPredicted RBP8.68□□□□□ -1.02
UPF3A-212ENST00000619079 ZNF414Q96IQ9 312 aa8.68□□□□□ -1.02
UPF3A-212ENST00000619079 INSIG2Q9Y5U4 225 aa8.68□□□□□ -1.02
UPF3A-212ENST00000619079 KALRNO60229 2985 aa8.68□□□□□ -1.02
UPF3A-212ENST00000619079 IGKV1D-17A0A075B6S4 117 aa8.68□□□□□ -1.02
UPF3A-212ENST00000619079 MAGEA5P43359 124 aa8.68□□□□□ -1.02
UPF3A-212ENST00000619079 KIR2DL2P43627 348 aaPredicted RBP8.68□□□□□ -1.02
UPF3A-212ENST00000619079 RAB9AP51151 201 aa8.68□□□□□ -1.02
UPF3A-212ENST00000619079 CKS1BP61024 79 aa8.68□□□□□ -1.02
UPF3A-212ENST00000619079 HOXA4Q00056 320 aaPredicted RBP8.68□□□□□ -1.02
UPF3A-212ENST00000619079 TMEM30BQ3MIR4 351 aa8.68□□□□□ -1.02
UPF3A-212ENST00000619079 S100A7AQ86SG5 101 aa8.68□□□□□ -1.02
UPF3A-212ENST00000619079 Q86TA4 180 aa8.68□□□□□ -1.02
UPF3A-212ENST00000619079 SGK494Q96LW2 274 aa8.68□□□□□ -1.02
UPF3A-212ENST00000619079 PRRC2CQ9Y520 2896 aaKnown RBP8.67□□□□□ -1.02
UPF3A-212ENST00000619079 CACNG7P62955 275 aa8.67□□□□□ -1.02
UPF3A-212ENST00000619079 TMEM108Q6UXF1 575 aa8.67□□□□□ -1.02
UPF3A-212ENST00000619079 TTTY12Q9BZ98 90 aa8.67□□□□□ -1.02
UPF3A-212ENST00000619079 NDUFA4L2Q9NRX3 87 aa8.67□□□□□ -1.02
UPF3A-212ENST00000619079 SRRM5B3KS81 715 aa8.66□□□□□ -1.02
UPF3A-212ENST00000619079 HBDP02042 147 aa8.66□□□□□ -1.02
UPF3A-212ENST00000619079 PRB1P04280 392 aa8.66□□□□□ -1.02
UPF3A-212ENST00000619079 CGB3P0DN86 165 aa8.66□□□□□ -1.02
UPF3A-212ENST00000619079 CGB7P0DN87 165 aa8.66□□□□□ -1.02
UPF3A-212ENST00000619079 FCGR2BP31994 310 aaPredicted RBP8.66□□□□□ -1.02
UPF3A-212ENST00000619079 NMUP48645 174 aa8.66□□□□□ -1.02
UPF3A-212ENST00000619079 Q5PR19 223 aa8.66□□□□□ -1.02
UPF3A-212ENST00000619079 Q8NA96 180 aa8.66□□□□□ -1.02
UPF3A-212ENST00000619079 OSR1Q8TAX0 266 aaPredicted RBP8.66□□□□□ -1.02
UPF3A-212ENST00000619079 NPIPB3Q92617 1050 aa8.66□□□□□ -1.02
UPF3A-212ENST00000619079 BBC3Q96PG8 261 aaPredicted RBP8.66□□□□□ -1.02
UPF3A-212ENST00000619079 SPANXB1Q9NS25 103 aaPredicted RBP8.66□□□□□ -1.02
UPF3A-212ENST00000619079 RALYQ9UKM9 306 aaKnown RBP8.66□□□□□ -1.02
UPF3A-212ENST00000619079 TRBV6-1A0A0K0K1D8 114 aa8.66□□□□□ -1.02
UPF3A-212ENST00000619079 KBTBD11-OT1A0A1B0GTJ5 212 aa8.66□□□□□ -1.02
UPF3A-212ENST00000619079 SHISA9B4DS77 424 aa8.66□□□□□ -1.02
UPF3A-212ENST00000619079 SAA1P0DJI8 122 aaPredicted RBP8.66□□□□□ -1.02
UPF3A-212ENST00000619079 TMEM116Q8NCL8 245 aa8.66□□□□□ -1.02
UPF3A-212ENST00000619079 MRAP2Q96G30 205 aa8.66□□□□□ -1.02
UPF3A-212ENST00000619079 A0A096LNJ9 63 aa8.65□□□□□ -1.02
UPF3A-212ENST00000619079 GCSHP23434 173 aa8.65□□□□□ -1.02
UPF3A-212ENST00000619079 PRR30Q53SZ7 412 aaPredicted RBP8.65□□□□□ -1.02
UPF3A-212ENST00000619079 ZNF788Q6ZQV5 615 aa8.65□□□□□ -1.02
UPF3A-212ENST00000619079 ZCCHC24Q8N2G6 241 aaKnown RBP8.65□□□□□ -1.02
UPF3A-212ENST00000619079 PIP4P2Q8N4L2 257 aa8.65□□□□□ -1.02
UPF3A-212ENST00000619079 LEAP2Q969E1 77 aa8.65□□□□□ -1.02
UPF3A-212ENST00000619079 Q9H3A6 140 aa8.65□□□□□ -1.02
UPF3A-212ENST00000619079 IGSF10Q6WRI0 2623 aa8.65□□□□□ -1.02
UPF3A-212ENST00000619079 IGKV1D-37A0A075B6S9 117 aa8.65□□□□□ -1.02
UPF3A-212ENST00000619079 C22orf46C9J442 243 aa8.65□□□□□ -1.02
UPF3A-212ENST00000619079 CFHR2P36980 270 aa8.65□□□□□ -1.02
UPF3A-212ENST00000619079 IFI27P40305 119 aaPredicted RBP8.65□□□□□ -1.02
UPF3A-212ENST00000619079 C17orf58Q2M2W7 97 aa8.65□□□□□ -1.02
UPF3A-212ENST00000619079 CCDC144NLQ6NUI1 221 aa8.65□□□□□ -1.02
UPF3A-212ENST00000619079 ZNF493Q6ZR52 646 aa8.65□□□□□ -1.02
UPF3A-212ENST00000619079 BCL6BQ8N143 479 aaPredicted RBP8.65□□□□□ -1.02
UPF3A-212ENST00000619079 IFI27L1Q96BM0 104 aa8.65□□□□□ -1.02
UPF3A-212ENST00000619079 ZNF48Q96MX3 618 aaPredicted RBP8.65□□□□□ -1.02
UPF3A-212ENST00000619079 DEFB127Q9H1M4 99 aa8.65□□□□□ -1.02
UPF3A-212ENST00000619079 OTORQ9NRC9 128 aa8.65□□□□□ -1.02
UPF3A-212ENST00000619079 AGFG2O95081 481 aa8.64□□□□□ -1.03
UPF3A-212ENST00000619079 PLAUP00749 431 aa8.64□□□□□ -1.03
UPF3A-212ENST00000619079 IGKV1-16P04430 117 aa8.64□□□□□ -1.03
UPF3A-212ENST00000619079 ARMS2P0C7Q2 107 aa8.64□□□□□ -1.03
UPF3A-212ENST00000619079 SSBP2P81877 361 aaPredicted RBP8.64□□□□□ -1.03
UPF3A-212ENST00000619079 PCP2Q8IVA1 136 aa8.64□□□□□ -1.03
UPF3A-212ENST00000619079 A0A1W2PRD5 423 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms