RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 CDX1P47902 265 aaPredicted RBP10.93□□□□□ -0.66
USP39-220ENST00000613444 CCDC28AQ8IWP9 274 aa10.93□□□□□ -0.66
USP39-220ENST00000613444 TMEM190Q8WZ59 177 aa10.93□□□□□ -0.66
USP39-220ENST00000613444 SEC11CQ9BY50 192 aa10.93□□□□□ -0.66
USP39-220ENST00000613444 H3BQ15 152 aa10.92□□□□□ -0.66
USP39-220ENST00000613444 APOHP02749 345 aaPredicted RBP10.92□□□□□ -0.66
USP39-220ENST00000613444 IGLC2P0DOY2 106 aa10.92□□□□□ -0.66
USP39-220ENST00000613444 CST9LP1Q5W188 147 aa10.92□□□□□ -0.66
USP39-220ENST00000613444 S100A7AQ86SG5 101 aa10.92□□□□□ -0.66
USP39-220ENST00000613444 ZNF586Q9NXT0 402 aa10.92□□□□□ -0.66
USP39-220ENST00000613444 A0A1W2PRE2 83 aa10.92□□□□□ -0.66
USP39-220ENST00000613444 GGTLC3B5MD39 225 aa10.92□□□□□ -0.66
USP39-220ENST00000613444 ZNF207O43670 478 aaKnown RBP10.92□□□□□ -0.66
USP39-220ENST00000613444 NBEAP1P0C6P0 100 aa10.92□□□□□ -0.66
USP39-220ENST00000613444 NPPCP23582 126 aa10.92□□□□□ -0.66
USP39-220ENST00000613444 FAM90A2PQ658T7 463 aa10.92□□□□□ -0.66
USP39-220ENST00000613444 HIST2H2BDQ6DRA6 164 aa10.92□□□□□ -0.66
USP39-220ENST00000613444 BPIFA4PQ86YQ2 179 aa10.92□□□□□ -0.66
USP39-220ENST00000613444 GPHB5Q86YW7 130 aa10.92□□□□□ -0.66
USP39-220ENST00000613444 OR4F5Q8NH21 305 aa10.92□□□□□ -0.66
USP39-220ENST00000613444 OR4F4Q96R69 305 aa10.92□□□□□ -0.66
USP39-220ENST00000613444 C20orf24Q9BUV8 137 aa10.92□□□□□ -0.66
USP39-220ENST00000613444 CARHSP1Q9Y2V2 147 aaKnown RBP10.92□□□□□ -0.66
USP39-220ENST00000613444 IGHV4OR15-8A0A075B7B6 117 aa10.91□□□□□ -0.66
USP39-220ENST00000613444 A0A087WW49 117 aa10.91□□□□□ -0.66
USP39-220ENST00000613444 F8W036 122 aa10.91□□□□□ -0.66
USP39-220ENST00000613444 HIST1H1EP10412 219 aaKnown RBP10.91□□□□□ -0.66
USP39-220ENST00000613444 MYCNOSP40205 109 aa10.91□□□□□ -0.66
USP39-220ENST00000613444 PROK1P58294 105 aa10.91□□□□□ -0.66
USP39-220ENST00000613444 C17orf77Q96MU5 243 aa10.91□□□□□ -0.66
USP39-220ENST00000613444 METTL26Q96S19 204 aa10.91□□□□□ -0.66
USP39-220ENST00000613444 TXNDC17Q9BRA2 123 aa10.91□□□□□ -0.66
USP39-220ENST00000613444 MAST4O15021 2626 aa10.91□□□□□ -0.66
USP39-220ENST00000613444 SMAD5-AS1Q9Y6J3 95 aa10.9□□□□□ -0.66
USP39-220ENST00000613444 JMJD1CQ15652 2540 aa10.9□□□□□ -0.66
USP39-220ENST00000613444 TMEM250H0YL14 139 aa10.9□□□□□ -0.66
USP39-220ENST00000613444 NDUFB4O95168 129 aa10.9□□□□□ -0.66
USP39-220ENST00000613444 CD28P10747 220 aa10.9□□□□□ -0.66
USP39-220ENST00000613444 C4orf3Q8WVX3 66 aa10.9□□□□□ -0.66
USP39-220ENST00000613444 WFDC12Q8WWY7 111 aa10.9□□□□□ -0.66
USP39-220ENST00000613444 H3BTX0 84 aa10.89□□□□□ -0.67
USP39-220ENST00000613444 GUCA2BQ16661 112 aa10.89□□□□□ -0.67
USP39-220ENST00000613444 BLNKQ8WV28 456 aa10.89□□□□□ -0.67
USP39-220ENST00000613444 RNF114Q9Y508 228 aa10.89□□□□□ -0.67
USP39-220ENST00000613444 TRBV19A0A075B6N1 114 aa10.89□□□□□ -0.67
USP39-220ENST00000613444 IGHV3OR16-13A0A075B7E8 117 aa10.89□□□□□ -0.67
USP39-220ENST00000613444 IGHV3-49A0A0A0MS15 119 aa10.89□□□□□ -0.67
USP39-220ENST00000613444 IGHV3-74A0A0B4J1X5 117 aa10.89□□□□□ -0.67
USP39-220ENST00000613444 IGHV3-66A0A0C4DH42 116 aa10.89□□□□□ -0.67
USP39-220ENST00000613444 PDE6DO43924 150 aa10.89□□□□□ -0.67
USP39-220ENST00000613444 APOC3P02656 99 aa10.89□□□□□ -0.67
USP39-220ENST00000613444 RPL7P18124 248 aaKnown RBP10.89□□□□□ -0.67
USP39-220ENST00000613444 S100A7P31151 101 aa10.89□□□□□ -0.67
USP39-220ENST00000613444 DEFB136Q30KP8 78 aa10.89□□□□□ -0.67
USP39-220ENST00000613444 SOHLH1Q5JUK2 328 aa10.89□□□□□ -0.67
USP39-220ENST00000613444 C1orf194Q5T5A4 169 aa10.89□□□□□ -0.67
USP39-220ENST00000613444 OR8I2Q8N0Y5 310 aa10.89□□□□□ -0.67
USP39-220ENST00000613444 RNF24Q9Y225 148 aa10.89□□□□□ -0.67
USP39-220ENST00000613444 ZNF320A2RRD8 509 aa10.88□□□□□ -0.67
USP39-220ENST00000613444 SUMO1P63165 101 aaKnown RBP10.88□□□□□ -0.67
USP39-220ENST00000613444 RPEL1Q2QD12 228 aa10.88□□□□□ -0.67
USP39-220ENST00000613444 OR4F17Q8NGA8 305 aa10.88□□□□□ -0.67
USP39-220ENST00000613444 ELOVL1Q9BW60 279 aa10.88□□□□□ -0.67
USP39-220ENST00000613444 SCO2A0A1W2PP80 73 aa10.87□□□□□ -0.67
USP39-220ENST00000613444 K7EMT4 169 aa10.87□□□□□ -0.67
USP39-220ENST00000613444 HAX1O00165 279 aa10.87□□□□□ -0.67
USP39-220ENST00000613444 HOXD3P31249 432 aaPredicted RBP10.87□□□□□ -0.67
USP39-220ENST00000613444 CEBPGP53567 150 aa10.87□□□□□ -0.67
USP39-220ENST00000613444 RANP62826 216 aaKnown RBP10.87□□□□□ -0.67
USP39-220ENST00000613444 FAM106AQ4KMX7 169 aa10.87□□□□□ -0.67
USP39-220ENST00000613444 TM4SF20Q53R12 229 aa10.87□□□□□ -0.67
USP39-220ENST00000613444 C11orf44Q8N8P7 122 aa10.87□□□□□ -0.67
USP39-220ENST00000613444 C11orf52Q96A22 123 aa10.87□□□□□ -0.67
USP39-220ENST00000613444 DAZ1Q9NQZ3 744 aaKnown RBP10.87□□□□□ -0.67
USP39-220ENST00000613444 F6UZH7 168 aa10.87□□□□□ -0.67
USP39-220ENST00000613444 SLC17A3O00476 420 aa10.87□□□□□ -0.67
USP39-220ENST00000613444 EDN2P20800 178 aa10.87□□□□□ -0.67
USP39-220ENST00000613444 C16orf54Q6UWD8 224 aa10.87□□□□□ -0.67
USP39-220ENST00000613444 REC114Q7Z4M0 266 aa10.87□□□□□ -0.67
USP39-220ENST00000613444 KLHL30-AS1Q8NEE0 82 aa10.87□□□□□ -0.67
USP39-220ENST00000613444 GLMPQ8WWB7 406 aa10.87□□□□□ -0.67
USP39-220ENST00000613444 CITED2Q99967 270 aaPredicted RBP10.87□□□□□ -0.67
USP39-220ENST00000613444 NKX6-2Q9C056 277 aaPredicted RBP10.87□□□□□ -0.67
USP39-220ENST00000613444 KLF5Q13887 457 aaPredicted RBP10.86□□□□□ -0.67
USP39-220ENST00000613444 KHDC1LQ5JSQ8 128 aa10.86□□□□□ -0.67
USP39-220ENST00000613444 SIGLEC15Q6ZMC9 328 aa10.86□□□□□ -0.67
USP39-220ENST00000613444 DERL1Q9BUN8 251 aa10.86□□□□□ -0.67
USP39-220ENST00000613444 PARLQ9H300 379 aa10.86□□□□□ -0.67
USP39-220ENST00000613444 Q9H3A6 140 aa10.86□□□□□ -0.67
USP39-220ENST00000613444 IGHV7-4-1A0A0J9YVY3 117 aa10.86□□□□□ -0.67
USP39-220ENST00000613444 TMEM213A2RRL7 107 aa10.86□□□□□ -0.67
USP39-220ENST00000613444 A8MWP6 167 aa10.86□□□□□ -0.67
USP39-220ENST00000613444 LGALS9O00182 355 aa10.86□□□□□ -0.67
USP39-220ENST00000613444 PDE6HQ13956 83 aa10.86□□□□□ -0.67
USP39-220ENST00000613444 OR11H1Q8NG94 326 aa10.86□□□□□ -0.67
USP39-220ENST00000613444 GPR82Q96P67 336 aa10.86□□□□□ -0.67
USP39-220ENST00000613444 A0A087X0K7 114 aa10.85□□□□□ -0.67
USP39-220ENST00000613444 SYNJ2BPP57105 145 aa10.85□□□□□ -0.67
USP39-220ENST00000613444 KRTAP10-3P60369 221 aa10.85□□□□□ -0.67
USP39-220ENST00000613444 ATRAIDQ6UW56 229 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms