RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 TRAV9-2A0A087WT02 112 aa11.19□□□□□ -0.62
COL6A1-207ENST00000612273 C2orf70A6NJV1 201 aa11.19□□□□□ -0.62
COL6A1-207ENST00000612273 CEACAM4O75871 244 aa11.19□□□□□ -0.62
COL6A1-207ENST00000612273 MRGPRG-AS1Q2M3A8 158 aa11.19□□□□□ -0.62
COL6A1-207ENST00000612273 MPV17L2Q567V2 206 aa11.19□□□□□ -0.62
COL6A1-207ENST00000612273 OR8B3Q8NGG8 313 aa11.19□□□□□ -0.62
COL6A1-207ENST00000612273 CELSR1Q9NYQ6 3014 aa11.19□□□□□ -0.62
COL6A1-207ENST00000612273 FAM90A27PA6NNH2 459 aa11.19□□□□□ -0.62
COL6A1-207ENST00000612273 GRNP28799 593 aaKnown RBP11.19□□□□□ -0.62
COL6A1-207ENST00000612273 IGHV1-24A0A0C4DH33 117 aa11.19□□□□□ -0.62
COL6A1-207ENST00000612273 CBY3A6NI87 242 aa11.19□□□□□ -0.62
COL6A1-207ENST00000612273 ARMS2P0C7Q2 107 aa11.19□□□□□ -0.62
COL6A1-207ENST00000612273 FCGR2BP31994 310 aaPredicted RBP11.19□□□□□ -0.62
COL6A1-207ENST00000612273 MC5RP33032 325 aa11.19□□□□□ -0.62
COL6A1-207ENST00000612273 TMEM155Q4W5P6 130 aa11.19□□□□□ -0.62
COL6A1-207ENST00000612273 SLC25A39Q9BZJ4 359 aaPredicted RBP11.19□□□□□ -0.62
COL6A1-207ENST00000612273 IGHV1-3A0A0C4DH29 117 aa11.18□□□□□ -0.62
COL6A1-207ENST00000612273 CCL25O15444 150 aa11.18□□□□□ -0.62
COL6A1-207ENST00000612273 GP9P14770 177 aa11.18□□□□□ -0.62
COL6A1-207ENST00000612273 NUP37Q8NFH4 326 aa11.18□□□□□ -0.62
COL6A1-207ENST00000612273 TMUB1Q9BVT8 246 aa11.18□□□□□ -0.62
COL6A1-207ENST00000612273 C7orf69Q9H7B7 122 aa11.18□□□□□ -0.62
COL6A1-207ENST00000612273 IL4P05112 153 aa11.18□□□□□ -0.62
COL6A1-207ENST00000612273 ATP5IP56385 69 aaPredicted RBP11.18□□□□□ -0.62
COL6A1-207ENST00000612273 KLRD1Q13241 179 aa11.18□□□□□ -0.62
COL6A1-207ENST00000612273 VAMP3Q15836 100 aa11.18□□□□□ -0.62
COL6A1-207ENST00000612273 ETFRF1Q6IPR1 90 aa11.18□□□□□ -0.62
COL6A1-207ENST00000612273 FAM231DQ6ZW35 169 aa11.18□□□□□ -0.62
COL6A1-207ENST00000612273 WFDC3Q8IUB2 231 aa11.18□□□□□ -0.62
COL6A1-207ENST00000612273 THAP8Q8NA92 274 aa11.18□□□□□ -0.62
COL6A1-207ENST00000612273 MRPL27Q9P0M9 148 aaKnown RBP11.18□□□□□ -0.62
COL6A1-207ENST00000612273 NUDT3O95989 172 aa11.17□□□□□ -0.62
COL6A1-207ENST00000612273 TEX45Q8NA69 505 aa11.17□□□□□ -0.62
COL6A1-207ENST00000612273 LOC102724200A0A096LPH7 203 aaPredicted RBP11.17□□□□□ -0.62
COL6A1-207ENST00000612273 VSTM5A8MXK1 200 aa11.17□□□□□ -0.62
COL6A1-207ENST00000612273 LINC00614P0C842 121 aa11.17□□□□□ -0.62
COL6A1-207ENST00000612273 LGALS7P47929 136 aa11.17□□□□□ -0.62
COL6A1-207ENST00000612273 STXBP6Q8NFX7 210 aa11.17□□□□□ -0.62
COL6A1-207ENST00000612273 PPIAL4CA0A0B4J2A2 164 aa11.17□□□□□ -0.62
COL6A1-207ENST00000612273 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.17□□□□□ -0.62
COL6A1-207ENST00000612273 TIMM23O14925 209 aa11.17□□□□□ -0.62
COL6A1-207ENST00000612273 PPIAL4GP0DN37 164 aa11.17□□□□□ -0.62
COL6A1-207ENST00000612273 MYCNOSP40205 109 aa11.17□□□□□ -0.62
COL6A1-207ENST00000612273 RNF151Q2KHN1 245 aa11.17□□□□□ -0.62
COL6A1-207ENST00000612273 C8orf46Q8TAG6 207 aa11.17□□□□□ -0.62
COL6A1-207ENST00000612273 RBPMS2Q6ZRY4 209 aaKnown RBP11.16□□□□□ -0.62
COL6A1-207ENST00000612273 TMEM116Q8NCL8 245 aa11.16□□□□□ -0.62
COL6A1-207ENST00000612273 CHRDL1Q9BU40 450 aa11.16□□□□□ -0.62
COL6A1-207ENST00000612273 IGFL3Q6UXB1 125 aa11.16□□□□□ -0.62
COL6A1-207ENST00000612273 MLST8Q9BVC4 326 aa11.16□□□□□ -0.62
COL6A1-207ENST00000612273 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.16□□□□□ -0.62
COL6A1-207ENST00000612273 IGLC1P0CG04 106 aa11.15□□□□□ -0.62
COL6A1-207ENST00000612273 FAM106CPP0CH98 169 aa11.15□□□□□ -0.62
COL6A1-207ENST00000612273 FAM106AQ4KMX7 169 aa11.15□□□□□ -0.62
COL6A1-207ENST00000612273 LDLRAD2Q5SZI1 272 aa11.15□□□□□ -0.62
COL6A1-207ENST00000612273 Q86TA4 180 aa11.15□□□□□ -0.62
COL6A1-207ENST00000612273 IGHV3OR16-13A0A075B7E8 117 aa11.15□□□□□ -0.62
COL6A1-207ENST00000612273 A0A087X0K7 114 aa11.15□□□□□ -0.62
COL6A1-207ENST00000612273 IGHV3-74A0A0B4J1X5 117 aa11.15□□□□□ -0.62
COL6A1-207ENST00000612273 A0A1B0GXF2 115 aa11.15□□□□□ -0.62
COL6A1-207ENST00000612273 SYS1-DBNDD2H3BUS1 97 aa11.15□□□□□ -0.62
COL6A1-207ENST00000612273 TOMM40O96008 361 aa11.15□□□□□ -0.62
COL6A1-207ENST00000612273 OR8A1Q8NGG7 326 aa11.15□□□□□ -0.62
COL6A1-207ENST00000612273 C8orf49Q96NF6 230 aa11.15□□□□□ -0.62
COL6A1-207ENST00000612273 TRGV9Q99603 122 aa11.15□□□□□ -0.62
COL6A1-207ENST00000612273 F11RQ9Y624 299 aaKnown RBP11.15□□□□□ -0.62
COL6A1-207ENST00000612273 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.15□□□□□ -0.63
COL6A1-207ENST00000612273 NCBP2LA6PVI3 153 aaKnown RBP11.15□□□□□ -0.63
COL6A1-207ENST00000612273 BUB1B-PAK6H3BSN5 160 aa11.15□□□□□ -0.63
COL6A1-207ENST00000612273 IGKV1-17P01599 117 aa11.15□□□□□ -0.63
COL6A1-207ENST00000612273 APOHP02749 345 aaPredicted RBP11.15□□□□□ -0.63
COL6A1-207ENST00000612273 DLX6P56179 175 aa11.15□□□□□ -0.63
COL6A1-207ENST00000612273 FBLN7Q53RD9 439 aa11.15□□□□□ -0.63
COL6A1-207ENST00000612273 PRSS3P2Q8NHM4 247 aa11.15□□□□□ -0.63
COL6A1-207ENST00000612273 WIPF2Q8TF74 440 aaPredicted RBP11.15□□□□□ -0.63
COL6A1-207ENST00000612273 RBM14Q96PK6 669 aaKnown RBP11.15□□□□□ -0.63
COL6A1-207ENST00000612273 SHISA9B4DS77 424 aa11.14□□□□□ -0.63
COL6A1-207ENST00000612273 LTAP01374 205 aa11.14□□□□□ -0.63
COL6A1-207ENST00000612273 OR4A5Q8NH83 315 aa11.14□□□□□ -0.63
COL6A1-207ENST00000612273 FMC1Q96HJ9 113 aa11.14□□□□□ -0.63
COL6A1-207ENST00000612273 TEX22C9J3V5 150 aa11.14□□□□□ -0.63
COL6A1-207ENST00000612273 FOXE3Q13461 319 aa11.14□□□□□ -0.63
COL6A1-207ENST00000612273 RNASE8Q8TDE3 154 aaKnown RBP11.14□□□□□ -0.63
COL6A1-207ENST00000612273 HSBP1L1C9JCN9 74 aa11.13□□□□□ -0.63
COL6A1-207ENST00000612273 TMEM30BQ3MIR4 351 aa11.13□□□□□ -0.63
COL6A1-207ENST00000612273 Q8TAT8 98 aa11.13□□□□□ -0.63
COL6A1-207ENST00000612273 TMEM213A2RRL7 107 aa11.13□□□□□ -0.63
COL6A1-207ENST00000612273 OR2J3O76001 311 aa11.13□□□□□ -0.63
COL6A1-207ENST00000612273 NAA38Q9BRA0 125 aaKnown RBP11.13□□□□□ -0.63
COL6A1-207ENST00000612273 CREBBPQ92793 2442 aa11.13□□□□□ -0.63
COL6A1-207ENST00000612273 SMKR1H3BMG3 65 aa11.13□□□□□ -0.63
COL6A1-207ENST00000612273 CRYGCP07315 174 aa11.13□□□□□ -0.63
COL6A1-207ENST00000612273 TMEM11P17152 192 aa11.13□□□□□ -0.63
COL6A1-207ENST00000612273 OR4F17Q8NGA8 305 aa11.13□□□□□ -0.63
COL6A1-207ENST00000612273 KLF12Q9Y4X4 402 aa11.13□□□□□ -0.63
COL6A1-207ENST00000612273 C19orf71A6NCJ1 209 aa11.12□□□□□ -0.63
COL6A1-207ENST00000612273 PCP4P48539 62 aa11.12□□□□□ -0.63
COL6A1-207ENST00000612273 LOXL1Q08397 574 aaPredicted RBP11.12□□□□□ -0.63
COL6A1-207ENST00000612273 FAM120AOSQ5T036 256 aa11.12□□□□□ -0.63
COL6A1-207ENST00000612273 ZNF738Q8NE65 137 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms