RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 LCE1BQ5T7P3 118 aa2.88□□□□□ -1.95
LINC00540-201ENST00000611481 SMIM15Q7Z3B0 74 aa2.88□□□□□ -1.95
LINC00540-201ENST00000611481 SREK1IP1Q8N9Q2 155 aaPredicted RBP2.88□□□□□ -1.95
LINC00540-201ENST00000611481 OR10C1Q96KK4 312 aa2.88□□□□□ -1.95
LINC00540-201ENST00000611481 TPT1P8Q9HAU6 139 aa2.88□□□□□ -1.95
LINC00540-201ENST00000611481 HES4Q9HCC6 221 aa2.88□□□□□ -1.95
LINC00540-201ENST00000611481 C8orf4Q9NR00 106 aa2.88□□□□□ -1.95
LINC00540-201ENST00000611481 RAB26Q9ULW5 256 aa2.88□□□□□ -1.95
LINC00540-201ENST00000611481 F11RQ9Y624 299 aaKnown RBP2.88□□□□□ -1.95
LINC00540-201ENST00000611481 ALG5Q9Y673 324 aa2.88□□□□□ -1.95
LINC00540-201ENST00000611481 PRORSD1PA6NEY8 169 aa2.87□□□□□ -1.95
LINC00540-201ENST00000611481 METTL15A6NJ78 407 aa2.87□□□□□ -1.95
LINC00540-201ENST00000611481 UPK2O00526 184 aa2.87□□□□□ -1.95
LINC00540-201ENST00000611481 NOS1APO75052 506 aaPredicted RBP2.87□□□□□ -1.95
LINC00540-201ENST00000611481 KRTAP5-8O75690 187 aa2.87□□□□□ -1.95
LINC00540-201ENST00000611481 HAND1O96004 215 aa2.87□□□□□ -1.95
LINC00540-201ENST00000611481 IGHV3-23P01764 117 aa2.87□□□□□ -1.95
LINC00540-201ENST00000611481 CD14P08571 375 aa2.87□□□□□ -1.95
LINC00540-201ENST00000611481 MIFP14174 115 aa2.87□□□□□ -1.95
LINC00540-201ENST00000611481 ALOX5APP20292 161 aa2.87□□□□□ -1.95
LINC00540-201ENST00000611481 CFL1P23528 166 aaKnown RBP2.87□□□□□ -1.95
LINC00540-201ENST00000611481 ERP29P30040 261 aaKnown RBP2.87□□□□□ -1.95
LINC00540-201ENST00000611481 TCL1AP56279 114 aa2.87□□□□□ -1.95
LINC00540-201ENST00000611481 EMX2Q04743 252 aa2.87□□□□□ -1.95
LINC00540-201ENST00000611481 SMAGPQ0VAQ4 97 aa2.87□□□□□ -1.95
LINC00540-201ENST00000611481 FAM162BQ5T6X4 162 aa2.87□□□□□ -1.95
LINC00540-201ENST00000611481 METTL21CQ5VZV1 264 aa2.87□□□□□ -1.95
LINC00540-201ENST00000611481 TMEM236Q5W0B7 351 aa2.87□□□□□ -1.95
LINC00540-201ENST00000611481 ZNF343Q6P1L6 599 aa2.87□□□□□ -1.95
LINC00540-201ENST00000611481 Q6ZRN7 208 aaPredicted RBP2.87□□□□□ -1.95
LINC00540-201ENST00000611481 TMED4Q7Z7H5 227 aa2.87□□□□□ -1.95
LINC00540-201ENST00000611481 OR2D3Q8NGH3 330 aa2.87□□□□□ -1.95
LINC00540-201ENST00000611481 OR4D11Q8NGI4 311 aa2.87□□□□□ -1.95
LINC00540-201ENST00000611481 NEK7Q8TDX7 302 aa2.87□□□□□ -1.95
LINC00540-201ENST00000611481 C7orf33Q8WU49 177 aa2.87□□□□□ -1.95
LINC00540-201ENST00000611481 RTN4IP1Q8WWV3 396 aaPredicted RBP2.87□□□□□ -1.95
LINC00540-201ENST00000611481 RASSF5Q8WWW0 418 aa2.87□□□□□ -1.95
LINC00540-201ENST00000611481 VSIG2Q96IQ7 327 aa2.87□□□□□ -1.95
LINC00540-201ENST00000611481 ZIM3Q96PE6 472 aa2.87□□□□□ -1.95
LINC00540-201ENST00000611481 OR52E6Q96RD3 313 aa2.87□□□□□ -1.95
LINC00540-201ENST00000611481 SLC25A2Q9BXI2 301 aa2.87□□□□□ -1.95
LINC00540-201ENST00000611481 FBXL15Q9H469 300 aa2.87□□□□□ -1.95
LINC00540-201ENST00000611481 ZNF581Q9P0T4 197 aa2.87□□□□□ -1.95
LINC00540-201ENST00000611481 PRO0628Q9UI54 55 aa2.87□□□□□ -1.95
LINC00540-201ENST00000611481 MED31Q9Y3C7 131 aa2.87□□□□□ -1.95
LINC00540-201ENST00000611481 A0A087WTM6 91 aa2.86□□□□□ -1.95
LINC00540-201ENST00000611481 SMIM26A0A096LP01 95 aa2.86□□□□□ -1.95
LINC00540-201ENST00000611481 ODAMA1E959 279 aa2.86□□□□□ -1.95
LINC00540-201ENST00000611481 SMIM9A6NGZ8 99 aa2.86□□□□□ -1.95
LINC00540-201ENST00000611481 ZNF729A6NN14 1252 aaPredicted RBP2.86□□□□□ -1.95
LINC00540-201ENST00000611481 KRTAP4-16G5E9R7 235 aaPredicted RBP2.86□□□□□ -1.95
LINC00540-201ENST00000611481 MT-ND4P03905 459 aa2.86□□□□□ -1.95
LINC00540-201ENST00000611481 FABP3P05413 133 aa2.86□□□□□ -1.95
LINC00540-201ENST00000611481 IFI30P13284 250 aa2.86□□□□□ -1.95
LINC00540-201ENST00000611481 CRABP1P29762 137 aa2.86□□□□□ -1.95
LINC00540-201ENST00000611481 TALDO1P37837 337 aa2.86□□□□□ -1.95
LINC00540-201ENST00000611481 LGALS7P47929 136 aa2.86□□□□□ -1.95
LINC00540-201ENST00000611481 LINC00315P59091 139 aa2.86□□□□□ -1.95
LINC00540-201ENST00000611481 DNAJB13P59910 316 aa2.86□□□□□ -1.95
LINC00540-201ENST00000611481 CDK6Q00534 326 aa2.86□□□□□ -1.95
LINC00540-201ENST00000611481 IFITM3Q01628 133 aa2.86□□□□□ -1.95
LINC00540-201ENST00000611481 REG3AQ06141 175 aa2.86□□□□□ -1.95
LINC00540-201ENST00000611481 PPP1R1AQ13522 171 aa2.86□□□□□ -1.95
LINC00540-201ENST00000611481 GINS1Q14691 196 aa2.86□□□□□ -1.95
LINC00540-201ENST00000611481 TMEM42Q69YG0 159 aa2.86□□□□□ -1.95
LINC00540-201ENST00000611481 KDM4DQ6B0I6 523 aa2.86□□□□□ -1.95
LINC00540-201ENST00000611481 S100A7AQ86SG5 101 aa2.86□□□□□ -1.95
LINC00540-201ENST00000611481 COMMD7Q86VX2 200 aa2.86□□□□□ -1.95
LINC00540-201ENST00000611481 OR5A2Q8NGI9 324 aa2.86□□□□□ -1.95
LINC00540-201ENST00000611481 RXFP4Q8TDU9 374 aa2.86□□□□□ -1.95
LINC00540-201ENST00000611481 ASB17Q8WXJ9 295 aa2.86□□□□□ -1.95
LINC00540-201ENST00000611481 RPUSD4Q96CM3 377 aaKnown RBP2.86□□□□□ -1.95
LINC00540-201ENST00000611481 SMIM8Q96KF7 97 aa2.86□□□□□ -1.95
LINC00540-201ENST00000611481 NIPSNAP1Q9BPW8 284 aa2.86□□□□□ -1.95
LINC00540-201ENST00000611481 VSIRQ9H7M9 311 aa2.86□□□□□ -1.95
LINC00540-201ENST00000611481 NMNAT1Q9HAN9 279 aaPredicted RBP2.86□□□□□ -1.95
LINC00540-201ENST00000611481 RBFOX1Q9NWB1 397 aaKnown RBP2.86□□□□□ -1.95
LINC00540-201ENST00000611481 GID8Q9NWU2 228 aa2.86□□□□□ -1.95
LINC00540-201ENST00000611481 ZNF586Q9NXT0 402 aa2.86□□□□□ -1.95
LINC00540-201ENST00000611481 LINC00588Q9Y4M8 146 aa2.86□□□□□ -1.95
LINC00540-201ENST00000611481 LSM5Q9Y4Y9 91 aaKnown RBP2.86□□□□□ -1.95
LINC00540-201ENST00000611481 TRAV8-2A0A0B4J237 113 aa2.85□□□□□ -1.95
LINC00540-201ENST00000611481 A0A0J9YXY3 114 aa2.85□□□□□ -1.95
LINC00540-201ENST00000611481 LOC105371267A0A1B0GV96 52 aa2.85□□□□□ -1.95
LINC00540-201ENST00000611481 A0A1B0GXF2 115 aa2.85□□□□□ -1.95
LINC00540-201ENST00000611481 PPP5D1E7EU14 171 aa2.85□□□□□ -1.95
LINC00540-201ENST00000611481 MFNGO00587 321 aa2.85□□□□□ -1.95
LINC00540-201ENST00000611481 PDCD6O75340 191 aa2.85□□□□□ -1.95
LINC00540-201ENST00000611481 SERPINB7O75635 380 aa2.85□□□□□ -1.95
LINC00540-201ENST00000611481 GIPP09681 153 aaPredicted RBP2.85□□□□□ -1.95
LINC00540-201ENST00000611481 CCL18P55774 89 aa2.85□□□□□ -1.95
LINC00540-201ENST00000611481 TAS2R41P59536 307 aa2.85□□□□□ -1.95
LINC00540-201ENST00000611481 S100A12P80511 92 aa2.85□□□□□ -1.95
LINC00540-201ENST00000611481 RPL19P84098 196 aaKnown RBP2.85□□□□□ -1.95
LINC00540-201ENST00000611481 PLGLAQ15195 96 aa2.85□□□□□ -1.95
LINC00540-201ENST00000611481 C1orf195Q5TG92 126 aa2.85□□□□□ -1.95
LINC00540-201ENST00000611481 PLET1Q6UQ28 207 aa2.85□□□□□ -1.95
LINC00540-201ENST00000611481 CLEC19AQ6UXS0 136 aa2.85□□□□□ -1.95
LINC00540-201ENST00000611481 RASSF6Q6ZTQ3 369 aa2.85□□□□□ -1.95
LINC00540-201ENST00000611481 OR1L1Q8NH94 360 aa2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 120.5 ms