RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, human

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-223	ENST00000600552	ACOT7L	Q6ZUV0	252 aa		12.5	□□□□□ -0.41
SHKBP1-223	ENST00000600552	LRTM2	Q8N967	370 aa		12.5	□□□□□ -0.41
SHKBP1-223	ENST00000600552	SLC25A21	Q9BQT8	299 aa	Predicted RBP	12.5	□□□□□ -0.41
SHKBP1-223	ENST00000600552	LINC00854	A0A1B0GVQ3	168 aa		12.49	□□□□□ -0.41
SHKBP1-223	ENST00000600552	ADAP1	O75689	374 aa		12.49	□□□□□ -0.41
SHKBP1-223	ENST00000600552	IL5	P05113	134 aa		12.49	□□□□□ -0.41
SHKBP1-223	ENST00000600552	CNN1	P51911	297 aa	Known RBP	12.49	□□□□□ -0.41
SHKBP1-223	ENST00000600552	POLR2G	P62487	172 aa	Known RBP eCLIP	12.49	□□□□□ -0.41
SHKBP1-223	ENST00000600552	ZNF738	Q8NE65	137 aa		12.49	□□□□□ -0.41
SHKBP1-223	ENST00000600552	IGF2BP2-AS1	Q96M15	143 aa		12.49	□□□□□ -0.41
SHKBP1-223	ENST00000600552	C17orf77	Q96MU5	243 aa		12.49	□□□□□ -0.41
SHKBP1-223	ENST00000600552	PSENEN	Q9NZ42	101 aa		12.49	□□□□□ -0.41
SHKBP1-223	ENST00000600552		V9GYH0	126 aa		12.49	□□□□□ -0.41
SHKBP1-223	ENST00000600552		A0A1B0GVY2	172 aa		12.48	□□□□□ -0.41
SHKBP1-223	ENST00000600552	PRSS46	E5RG02	174 aa		12.48	□□□□□ -0.41
SHKBP1-223	ENST00000600552	OR5G3	P0C626	314 aa		12.48	□□□□□ -0.41
SHKBP1-223	ENST00000600552	INPP1	P49441	399 aa		12.48	□□□□□ -0.41
SHKBP1-223	ENST00000600552	RRAS2	P62070	204 aa	Predicted RBP	12.48	□□□□□ -0.41
SHKBP1-223	ENST00000600552	RHOB	P62745	196 aa		12.48	□□□□□ -0.41
SHKBP1-223	ENST00000600552	CYP2G1P	Q6ZSU1	146 aa		12.48	□□□□□ -0.41
SHKBP1-223	ENST00000600552	PPP1R14D	Q9NXH3	145 aa		12.48	□□□□□ -0.41
SHKBP1-223	ENST00000600552	TRAV12-2	A0A075B6T6	113 aa		12.47	□□□□□ -0.41
SHKBP1-223	ENST00000600552	SSSCA1	O60232	199 aa		12.47	□□□□□ -0.41
SHKBP1-223	ENST00000600552	DUSP14	O95147	198 aa	Known RBP	12.47	□□□□□ -0.41
SHKBP1-223	ENST00000600552	INS	P01308	110 aa		12.47	□□□□□ -0.41
SHKBP1-223	ENST00000600552	DEFB130B	P0DP73	79 aa		12.47	□□□□□ -0.41
SHKBP1-223	ENST00000600552	DEFB130A	P0DP74	79 aa		12.47	□□□□□ -0.41
SHKBP1-223	ENST00000600552	S100A7	P31151	101 aa		12.47	□□□□□ -0.41
SHKBP1-223	ENST00000600552	RAP2B	P61225	183 aa		12.47	□□□□□ -0.41
SHKBP1-223	ENST00000600552	LGALS9B	Q3B8N2	356 aa		12.47	□□□□□ -0.41
SHKBP1-223	ENST00000600552	AMTN	Q6UX39	209 aa		12.47	□□□□□ -0.41
SHKBP1-223	ENST00000600552	BAP18	Q8IXM2	172 aa		12.47	□□□□□ -0.41
SHKBP1-223	ENST00000600552	OR11H7	Q8NGC8	314 aa		12.47	□□□□□ -0.41
SHKBP1-223	ENST00000600552	LRRC20	Q8TCA0	184 aa		12.47	□□□□□ -0.41
SHKBP1-223	ENST00000600552	FAM210B	Q96KR6	192 aa		12.47	□□□□□ -0.41
SHKBP1-223	ENST00000600552	SLC25A39	Q9BZJ4	359 aa	Predicted RBP	12.47	□□□□□ -0.41
SHKBP1-223	ENST00000600552	SLC45A2	Q9UMX9	530 aa		12.47	□□□□□ -0.41
SHKBP1-223	ENST00000600552	HIGD1A	Q9Y241	93 aa		12.47	□□□□□ -0.41
SHKBP1-223	ENST00000600552	DNAH2	Q9P225	4427 aa		12.46	□□□□□ -0.41
SHKBP1-223	ENST00000600552	FAT2	Q9NYQ8	4349 aa		12.46	□□□□□ -0.41
SHKBP1-223	ENST00000600552	TRAV8-2	A0A0B4J237	113 aa		12.46	□□□□□ -0.41
SHKBP1-223	ENST00000600552	HYPM	O75409	117 aa		12.46	□□□□□ -0.41
SHKBP1-223	ENST00000600552	SCGB1D2	O95969	90 aa		12.46	□□□□□ -0.41
SHKBP1-223	ENST00000600552	HTN1	P15515	57 aa		12.46	□□□□□ -0.41
SHKBP1-223	ENST00000600552	HIST1H1A	Q02539	215 aa	Predicted RBP	12.46	□□□□□ -0.41
SHKBP1-223	ENST00000600552	FCN2	Q15485	313 aa		12.46	□□□□□ -0.41
SHKBP1-223	ENST00000600552	OR4D5	Q8NGN0	318 aa		12.46	□□□□□ -0.41
SHKBP1-223	ENST00000600552	GPR82	Q96P67	336 aa		12.46	□□□□□ -0.41
SHKBP1-223	ENST00000600552	FLVCR2	Q9UPI3	526 aa		12.46	□□□□□ -0.41
SHKBP1-223	ENST00000600552	C9orf170	A2RU37	121 aa		12.45	□□□□□ -0.42
SHKBP1-223	ENST00000600552	CCNK	O75909	580 aa		12.45	□□□□□ -0.42
SHKBP1-223	ENST00000600552	SNRPC	P09234	159 aa	Known RBP	12.45	□□□□□ -0.42
SHKBP1-223	ENST00000600552	OXA1L	Q15070	435 aa		12.45	□□□□□ -0.42
SHKBP1-223	ENST00000600552	TMEM144	Q7Z5S9	345 aa		12.45	□□□□□ -0.42
SHKBP1-223	ENST00000600552	UHRF2	Q96PU4	802 aa		12.45	□□□□□ -0.42
SHKBP1-223	ENST00000600552	LINC01587	Q99440	93 aa		12.45	□□□□□ -0.42
SHKBP1-223	ENST00000600552	ATG101	Q9BSB4	218 aa		12.45	□□□□□ -0.42
SHKBP1-223	ENST00000600552	PCLO	Q9Y6V0	5065 aa		12.45	□□□□□ -0.42
SHKBP1-223	ENST00000600552		F5H768	121 aa		12.44	□□□□□ -0.42
SHKBP1-223	ENST00000600552		H3BRN7	92 aa		12.44	□□□□□ -0.42
SHKBP1-223	ENST00000600552	LINC00869	P0C866	280 aa		12.44	□□□□□ -0.42
SHKBP1-223	ENST00000600552	ANXA7	P20073	488 aa	Known RBP	12.44	□□□□□ -0.42
SHKBP1-223	ENST00000600552	AZU1	P20160	251 aa		12.44	□□□□□ -0.42
SHKBP1-223	ENST00000600552	SHANK2-AS3	Q9BTD1	123 aa		12.44	□□□□□ -0.42
SHKBP1-223	ENST00000600552	ARL6	Q9H0F7	186 aa		12.44	□□□□□ -0.42
SHKBP1-223	ENST00000600552	NUDT3	O95989	172 aa		12.43	□□□□□ -0.42
SHKBP1-223	ENST00000600552	METTL15P1	P0C7V9	234 aa		12.43	□□□□□ -0.42
SHKBP1-223	ENST00000600552	RPL7	P18124	248 aa	Known RBP	12.43	□□□□□ -0.42
SHKBP1-223	ENST00000600552	ID3	Q02535	119 aa		12.43	□□□□□ -0.42
SHKBP1-223	ENST00000600552	RNF212	Q495C1	297 aa		12.43	□□□□□ -0.42
SHKBP1-223	ENST00000600552	SOHLH1	Q5JUK2	328 aa		12.43	□□□□□ -0.42
SHKBP1-223	ENST00000600552	SPANXN2	Q5MJ10	180 aa		12.43	□□□□□ -0.42
SHKBP1-223	ENST00000600552	TRIQK	Q629K1	86 aa		12.43	□□□□□ -0.42
SHKBP1-223	ENST00000600552	CCDC190	Q86UF4	302 aa		12.43	□□□□□ -0.42
SHKBP1-223	ENST00000600552	GSKIP	Q9P0R6	139 aa		12.43	□□□□□ -0.42
SHKBP1-223	ENST00000600552	NACA	E9PAV3	2078 aa		12.42	□□□□□ -0.42
SHKBP1-223	ENST00000600552		A8MTW9	85 aa		12.42	□□□□□ -0.42
SHKBP1-223	ENST00000600552	BOLA2-SMG1P6	H3BVE0	249 aa		12.42	□□□□□ -0.42
SHKBP1-223	ENST00000600552	CRX	O43186	299 aa	Predicted RBP	12.42	□□□□□ -0.42
SHKBP1-223	ENST00000600552	C4orf46	Q504U0	113 aa		12.42	□□□□□ -0.42
SHKBP1-223	ENST00000600552	UBE2M	P61081	183 aa	Known RBP	12.41	□□□□□ -0.42
SHKBP1-223	ENST00000600552	SLC38A11	Q08AI6	406 aa		12.41	□□□□□ -0.42
SHKBP1-223	ENST00000600552	PSG3	Q16557	428 aa		12.41	□□□□□ -0.42
SHKBP1-223	ENST00000600552	C1orf134	Q5TEV5	83 aa		12.41	□□□□□ -0.42
SHKBP1-223	ENST00000600552		Q6ZR54	194 aa		12.41	□□□□□ -0.42
SHKBP1-223	ENST00000600552	OR8A1	Q8NGG7	326 aa		12.41	□□□□□ -0.42
SHKBP1-223	ENST00000600552	SMIM8	Q96KF7	97 aa		12.41	□□□□□ -0.42
SHKBP1-223	ENST00000600552	MGAT4C	Q9UBM8	478 aa		12.41	□□□□□ -0.42
SHKBP1-223	ENST00000600552	LYRM9	A8MSI8	78 aa		12.4	□□□□□ -0.42
SHKBP1-223	ENST00000600552		H3BTX0	84 aa		12.4	□□□□□ -0.42
SHKBP1-223	ENST00000600552	OR4E1	P0C645	316 aa		12.4	□□□□□ -0.42
SHKBP1-223	ENST00000600552	MED14OS	P0DP75	135 aa		12.4	□□□□□ -0.42
SHKBP1-223	ENST00000600552	BAK1	Q16611	211 aa		12.4	□□□□□ -0.42
SHKBP1-223	ENST00000600552	IAH1	Q2TAA2	248 aa	Predicted RBP	12.4	□□□□□ -0.42
SHKBP1-223	ENST00000600552	DEDD2	Q8WXF8	326 aa		12.4	□□□□□ -0.42
SHKBP1-223	ENST00000600552	SRR	Q9GZT4	340 aa		12.4	□□□□□ -0.42
SHKBP1-223	ENST00000600552	PKHD1	P08F94	4074 aa		12.4	□□□□□ -0.42
SHKBP1-223	ENST00000600552	PMS2P5	A8MQ11	134 aa		12.39	□□□□□ -0.43
SHKBP1-223	ENST00000600552	GOSR2	O14653	212 aa		12.39	□□□□□ -0.43
SHKBP1-223	ENST00000600552	NDUFB6	O95139	128 aa		12.39	□□□□□ -0.43

Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms