RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 IAH1Q2TAA2 248 aaPredicted RBP11.34□□□□□ -0.59
VRK3-221ENST00000600284 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.34□□□□□ -0.59
VRK3-221ENST00000600284 OR10P1Q8NGE3 313 aa11.34□□□□□ -0.59
VRK3-221ENST00000600284 SHANK2-AS3Q9BTD1 123 aa11.34□□□□□ -0.59
VRK3-221ENST00000600284 SLC25A39Q9BZJ4 359 aaPredicted RBP11.34□□□□□ -0.59
VRK3-221ENST00000600284 RNF24Q9Y225 148 aa11.34□□□□□ -0.59
VRK3-221ENST00000600284 GOLT1BQ9Y3E0 138 aa11.34□□□□□ -0.59
VRK3-221ENST00000600284 F6UB75 175 aa11.33□□□□□ -0.6
VRK3-221ENST00000600284 K7EPK0 472 aa11.33□□□□□ -0.6
VRK3-221ENST00000600284 HYPMO75409 117 aa11.33□□□□□ -0.6
VRK3-221ENST00000600284 AMBPP02760 352 aa11.33□□□□□ -0.6
VRK3-221ENST00000600284 RPL7P18124 248 aaKnown RBP11.33□□□□□ -0.6
VRK3-221ENST00000600284 PRR20EP86478 221 aa11.33□□□□□ -0.6
VRK3-221ENST00000600284 PRR20CP86479 221 aa11.33□□□□□ -0.6
VRK3-221ENST00000600284 PRR20DP86480 221 aa11.33□□□□□ -0.6
VRK3-221ENST00000600284 PRR20BP86481 221 aa11.33□□□□□ -0.6
VRK3-221ENST00000600284 PRR20AP86496 221 aa11.33□□□□□ -0.6
VRK3-221ENST00000600284 ZBTB8BQ8NAP8 495 aaPredicted RBP11.33□□□□□ -0.6
VRK3-221ENST00000600284 C20orf173Q96LM9 149 aa11.33□□□□□ -0.6
VRK3-221ENST00000600284 GGACTQ9BVM4 153 aa11.33□□□□□ -0.6
VRK3-221ENST00000600284 SLC35B3Q9H1N7 401 aa11.33□□□□□ -0.6
VRK3-221ENST00000600284 HIGD1AQ9Y241 93 aa11.33□□□□□ -0.6
VRK3-221ENST00000600284 VPS13DQ5THJ4 4388 aa11.32□□□□□ -0.6
VRK3-221ENST00000600284 FRAS1Q86XX4 4008 aa11.32□□□□□ -0.6
VRK3-221ENST00000600284 IGHV3OR16-12A0A075B7B8 117 aa11.32□□□□□ -0.6
VRK3-221ENST00000600284 DUSP14O95147 198 aaKnown RBP11.32□□□□□ -0.6
VRK3-221ENST00000600284 METTL15P1P0C7V9 234 aa11.32□□□□□ -0.6
VRK3-221ENST00000600284 PXDC1Q5TGL8 231 aa11.32□□□□□ -0.6
VRK3-221ENST00000600284 TEPPQ6URK8 271 aa11.32□□□□□ -0.6
VRK3-221ENST00000600284 GSKIPQ9P0R6 139 aa11.32□□□□□ -0.6
VRK3-221ENST00000600284 MGAT4CQ9UBM8 478 aa11.32□□□□□ -0.6
VRK3-221ENST00000600284 DNAH6Q9C0G6 4158 aa11.31□□□□□ -0.6
VRK3-221ENST00000600284 PLA2G10O15496 165 aa11.31□□□□□ -0.6
VRK3-221ENST00000600284 LYRM1O43325 122 aa11.31□□□□□ -0.6
VRK3-221ENST00000600284 SCGB1D2O95969 90 aa11.31□□□□□ -0.6
VRK3-221ENST00000600284 HBE1P02100 147 aa11.31□□□□□ -0.6
VRK3-221ENST00000600284 LINC00869P0C866 280 aa11.31□□□□□ -0.6
VRK3-221ENST00000600284 AMTNQ6UX39 209 aa11.31□□□□□ -0.6
VRK3-221ENST00000600284 C1orf158Q8N1D5 194 aa11.31□□□□□ -0.6
VRK3-221ENST00000600284 FAM210BQ96KR6 192 aa11.31□□□□□ -0.6
VRK3-221ENST00000600284 NDUFAF3Q9BU61 184 aa11.31□□□□□ -0.6
VRK3-221ENST00000600284 SCRT1Q9BWW7 348 aa11.31□□□□□ -0.6
VRK3-221ENST00000600284 C20orf85Q9H1P6 137 aa11.31□□□□□ -0.6
VRK3-221ENST00000600284 RCL1Q9Y2P8 373 aaKnown RBP11.31□□□□□ -0.6
VRK3-221ENST00000600284 A0A087X0K7 114 aa11.3□□□□□ -0.6
VRK3-221ENST00000600284 TRAV8-2A0A0B4J237 113 aa11.3□□□□□ -0.6
VRK3-221ENST00000600284 CCNKO75909 580 aa11.3□□□□□ -0.6
VRK3-221ENST00000600284 OR5G3P0C626 314 aa11.3□□□□□ -0.6
VRK3-221ENST00000600284 RRAS2P62070 204 aaPredicted RBP11.3□□□□□ -0.6
VRK3-221ENST00000600284 OXA1LQ15070 435 aa11.3□□□□□ -0.6
VRK3-221ENST00000600284 GSG1LQ6UXU4 331 aa11.3□□□□□ -0.6
VRK3-221ENST00000600284 ZNF767PQ75MW2 155 aa11.3□□□□□ -0.6
VRK3-221ENST00000600284 IGF2BP2-AS1Q96M15 143 aa11.3□□□□□ -0.6
VRK3-221ENST00000600284 DKK2Q9UBU2 259 aa11.3□□□□□ -0.6
VRK3-221ENST00000600284 DNAH10Q8IVF4 4471 aa11.29□□□□□ -0.6
VRK3-221ENST00000600284 C7orf66A4D0T2 115 aa11.29□□□□□ -0.6
VRK3-221ENST00000600284 MBPP02686 304 aaPredicted RBP11.29□□□□□ -0.6
VRK3-221ENST00000600284 TCRBP04435 133 aa11.29□□□□□ -0.6
VRK3-221ENST00000600284 P0DMU3 169 aa11.29□□□□□ -0.6
VRK3-221ENST00000600284 FAM231AP0DMU4 169 aa11.29□□□□□ -0.6
VRK3-221ENST00000600284 FAM231CP0DMU5 169 aa11.29□□□□□ -0.6
VRK3-221ENST00000600284 CNN1P51911 297 aaKnown RBP11.29□□□□□ -0.6
VRK3-221ENST00000600284 EMP1P54849 157 aa11.29□□□□□ -0.6
VRK3-221ENST00000600284 B2MP61769 119 aa11.29□□□□□ -0.6
VRK3-221ENST00000600284 FGL1Q08830 312 aa11.29□□□□□ -0.6
VRK3-221ENST00000600284 ZNF846Q147U1 533 aa11.29□□□□□ -0.6
VRK3-221ENST00000600284 RRN3P1Q2M238 152 aa11.29□□□□□ -0.6
VRK3-221ENST00000600284 NIPSNAP3BQ9BS92 247 aa11.29□□□□□ -0.6
VRK3-221ENST00000600284 ARL6Q9H0F7 186 aa11.29□□□□□ -0.6
VRK3-221ENST00000600284 LOC102723971A0A1B0GUV8 181 aa11.28□□□□□ -0.6
VRK3-221ENST00000600284 GOSR2O14653 212 aa11.28□□□□□ -0.6
VRK3-221ENST00000600284 FAM222AQ5U5X8 452 aa11.28□□□□□ -0.6
VRK3-221ENST00000600284 PATE2Q6UY27 113 aa11.28□□□□□ -0.6
VRK3-221ENST00000600284 ZNF546Q86UE3 836 aa11.28□□□□□ -0.6
VRK3-221ENST00000600284 OR11H7Q8NGC8 314 aa11.28□□□□□ -0.6
VRK3-221ENST00000600284 UHRF2Q96PU4 802 aa11.28□□□□□ -0.6
VRK3-221ENST00000600284 ARV1Q9H2C2 271 aa11.28□□□□□ -0.6
VRK3-221ENST00000600284 L7N2F9 121 aa11.27□□□□□ -0.61
VRK3-221ENST00000600284 CXCL2P19875 107 aa11.27□□□□□ -0.61
VRK3-221ENST00000600284 CXCL3P19876 107 aa11.27□□□□□ -0.61
VRK3-221ENST00000600284 VAMP2P63027 116 aa11.27□□□□□ -0.61
VRK3-221ENST00000600284 IGFL4Q6B9Z1 124 aa11.27□□□□□ -0.61
VRK3-221ENST00000600284 LINC00299Q6ZSB3 139 aa11.27□□□□□ -0.61
VRK3-221ENST00000600284 RNF182Q8N6D2 247 aa11.27□□□□□ -0.61
VRK3-221ENST00000600284 ZNF738Q8NE65 137 aa11.27□□□□□ -0.61
VRK3-221ENST00000600284 ZNF431Q8TF32 576 aaPredicted RBP11.27□□□□□ -0.61
VRK3-221ENST00000600284 TMEM208Q9BTX3 173 aa11.27□□□□□ -0.61
VRK3-221ENST00000600284 CCDC32Q9BV29 185 aa11.27□□□□□ -0.61
VRK3-221ENST00000600284 AGPAT2O15120 278 aa11.26□□□□□ -0.61
VRK3-221ENST00000600284 CRXO43186 299 aaPredicted RBP11.26□□□□□ -0.61
VRK3-221ENST00000600284 INSP01308 110 aa11.26□□□□□ -0.61
VRK3-221ENST00000600284 SLC38A11Q08AI6 406 aa11.26□□□□□ -0.61
VRK3-221ENST00000600284 ARL16Q0P5N6 197 aa11.26□□□□□ -0.61
VRK3-221ENST00000600284 PSG3Q16557 428 aa11.26□□□□□ -0.61
VRK3-221ENST00000600284 POM121L12Q8N7R1 296 aa11.26□□□□□ -0.61
VRK3-221ENST00000600284 LRRC20Q8TCA0 184 aa11.26□□□□□ -0.61
VRK3-221ENST00000600284 YTHDF2Q9Y5A9 579 aaKnown RBP11.26□□□□□ -0.61
VRK3-221ENST00000600284 CCSO14618 274 aa11.25□□□□□ -0.61
VRK3-221ENST00000600284 MRPS12O15235 138 aaKnown RBP11.25□□□□□ -0.61
VRK3-221ENST00000600284 RAB31Q13636 194 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 99 ms