RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 DEFB135Q30KP9 77 aa11.18□□□□□ -0.62
LIG1-219ENST00000600055 ACTL10Q5JWF8 245 aa11.18□□□□□ -0.62
LIG1-219ENST00000600055 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.18□□□□□ -0.62
LIG1-219ENST00000600055 STHQ8IWL8 128 aa11.18□□□□□ -0.62
LIG1-219ENST00000600055 KIR2DL5AQ8N109 375 aa11.18□□□□□ -0.62
LIG1-219ENST00000600055 KIR2DL5BQ8NHK3 375 aa11.18□□□□□ -0.62
LIG1-219ENST00000600055 CHAC2Q8WUX2 184 aa11.18□□□□□ -0.62
LIG1-219ENST00000600055 TMEM37Q8WXS4 190 aa11.18□□□□□ -0.62
LIG1-219ENST00000600055 LINC00052Q96N35 136 aa11.18□□□□□ -0.62
LIG1-219ENST00000600055 CSTL1Q9H114 145 aa11.18□□□□□ -0.62
LIG1-219ENST00000600055 SEPSECSQ9HD40 501 aaKnown RBP11.18□□□□□ -0.62
LIG1-219ENST00000600055 hCG_2014768A0A024R1R8 64 aa11.17□□□□□ -0.62
LIG1-219ENST00000600055 UBE2CO00762 179 aa11.17□□□□□ -0.62
LIG1-219ENST00000600055 COX7A2P2O60397 106 aa11.17□□□□□ -0.62
LIG1-219ENST00000600055 RPL12P30050 165 aaKnown RBP11.17□□□□□ -0.62
LIG1-219ENST00000600055 S100A7P31151 101 aa11.17□□□□□ -0.62
LIG1-219ENST00000600055 PXDC1Q5TGL8 231 aa11.17□□□□□ -0.62
LIG1-219ENST00000600055 MORN5Q5VZ52 161 aa11.17□□□□□ -0.62
LIG1-219ENST00000600055 LINC00305Q7Z4B0 112 aa11.17□□□□□ -0.62
LIG1-219ENST00000600055 TRPT1Q86TN4 253 aaKnown RBP11.17□□□□□ -0.62
LIG1-219ENST00000600055 OR2T35Q8NGX2 323 aa11.17□□□□□ -0.62
LIG1-219ENST00000600055 C20orf173Q96LM9 149 aa11.17□□□□□ -0.62
LIG1-219ENST00000600055 GPR82Q96P67 336 aa11.17□□□□□ -0.62
LIG1-219ENST00000600055 EDA2RQ9HAV5 297 aa11.17□□□□□ -0.62
LIG1-219ENST00000600055 HSPB11Q9Y547 144 aa11.17□□□□□ -0.62
LIG1-219ENST00000600055 TENM3Q9P273 2699 aa11.17□□□□□ -0.62
LIG1-219ENST00000600055 SPRY2O43597 315 aa11.16□□□□□ -0.62
LIG1-219ENST00000600055 LYL1P12980 280 aa11.16□□□□□ -0.62
LIG1-219ENST00000600055 ID1P41134 155 aa11.16□□□□□ -0.62
LIG1-219ENST00000600055 RPL29P47914 159 aaKnown RBP11.16□□□□□ -0.62
LIG1-219ENST00000600055 PSMB3P49720 205 aa11.16□□□□□ -0.62
LIG1-219ENST00000600055 B2MP61769 119 aa11.16□□□□□ -0.62
LIG1-219ENST00000600055 Q5BKY6 102 aa11.16□□□□□ -0.62
LIG1-219ENST00000600055 C10orf113Q5VZT2 155 aa11.16□□□□□ -0.62
LIG1-219ENST00000600055 IGFL4Q6B9Z1 124 aa11.16□□□□□ -0.62
LIG1-219ENST00000600055 Q6ZWC4 215 aa11.16□□□□□ -0.62
LIG1-219ENST00000600055 C16orf92Q96LL3 132 aa11.16□□□□□ -0.62
LIG1-219ENST00000600055 NPCDR1Q9BY65 106 aa11.16□□□□□ -0.62
LIG1-219ENST00000600055 SMIM3Q9BZL3 60 aa11.16□□□□□ -0.62
LIG1-219ENST00000600055 DNAJC4Q9NNZ3 241 aa11.16□□□□□ -0.62
LIG1-219ENST00000600055 SLC39A9Q9NUM3 307 aa11.16□□□□□ -0.62
LIG1-219ENST00000600055 PXMP4Q9Y6I8 212 aa11.16□□□□□ -0.62
LIG1-219ENST00000600055 NBEAL2Q6ZNJ1 2754 aa11.15□□□□□ -0.62
LIG1-219ENST00000600055 CA1P00915 261 aaPredicted RBP11.15□□□□□ -0.62
LIG1-219ENST00000600055 SNRPCP09234 159 aaKnown RBP11.15□□□□□ -0.62
LIG1-219ENST00000600055 RPL7P18124 248 aaKnown RBP11.15□□□□□ -0.62
LIG1-219ENST00000600055 ATF4P18848 351 aaPredicted RBP11.15□□□□□ -0.62
LIG1-219ENST00000600055 GDF5OSQ5U4N7 250 aa11.15□□□□□ -0.62
LIG1-219ENST00000600055 Q6ZRG5 221 aa11.15□□□□□ -0.62
LIG1-219ENST00000600055 AKAP14Q86UN6 197 aa11.15□□□□□ -0.62
LIG1-219ENST00000600055 INO80EQ8NBZ0 244 aaPredicted RBP11.15□□□□□ -0.62
LIG1-219ENST00000600055 RNF183Q96D59 192 aa11.15□□□□□ -0.62
LIG1-219ENST00000600055 ELOA3CA0A087WX78 387 aaPredicted RBP11.14□□□□□ -0.63
LIG1-219ENST00000600055 TRAV8-2A0A0B4J237 113 aa11.14□□□□□ -0.63
LIG1-219ENST00000600055 TRAV5A0A0B4J249 113 aa11.14□□□□□ -0.63
LIG1-219ENST00000600055 ISLRO14498 428 aa11.14□□□□□ -0.63
LIG1-219ENST00000600055 MRPS12O15235 138 aaKnown RBP11.14□□□□□ -0.63
LIG1-219ENST00000600055 MPDU1O75352 247 aa11.14□□□□□ -0.63
LIG1-219ENST00000600055 GIG44P09565 113 aaPredicted RBP11.14□□□□□ -0.63
LIG1-219ENST00000600055 MEOX2P50222 304 aa11.14□□□□□ -0.63
LIG1-219ENST00000600055 S100A7AQ86SG5 101 aa11.14□□□□□ -0.63
LIG1-219ENST00000600055 ATP5SQ99766 215 aa11.14□□□□□ -0.63
LIG1-219ENST00000600055 WDR61Q9GZS3 305 aaKnown RBP11.14□□□□□ -0.63
LIG1-219ENST00000600055 WFDC1Q9HC57 220 aa11.14□□□□□ -0.63
LIG1-219ENST00000600055 TP53TG1Q9Y2A0 90 aa11.14□□□□□ -0.63
LIG1-219ENST00000600055 F6UB75 175 aa11.13□□□□□ -0.63
LIG1-219ENST00000600055 H3BMM0 161 aa11.13□□□□□ -0.63
LIG1-219ENST00000600055 C4BPBP20851 252 aa11.13□□□□□ -0.63
LIG1-219ENST00000600055 GCSAMLQ5JQS6 135 aa11.13□□□□□ -0.63
LIG1-219ENST00000600055 OR1L4Q8NGR5 311 aa11.13□□□□□ -0.63
LIG1-219ENST00000600055 A0A087X0K7 114 aa11.12□□□□□ -0.63
LIG1-219ENST00000600055 H3BTX0 84 aa11.12□□□□□ -0.63
LIG1-219ENST00000600055 IGKV3-20P01619 116 aa11.12□□□□□ -0.63
LIG1-219ENST00000600055 HLA-DRB4P13762 266 aa11.12□□□□□ -0.63
LIG1-219ENST00000600055 HLA-DMBP28068 263 aa11.12□□□□□ -0.63
LIG1-219ENST00000600055 TCTE3Q8IZS6 198 aa11.12□□□□□ -0.63
LIG1-219ENST00000600055 RNF182Q8N6D2 247 aa11.12□□□□□ -0.63
LIG1-219ENST00000600055 PFDN5Q99471 154 aa11.12□□□□□ -0.63
LIG1-219ENST00000600055 SAV1Q9H4B6 383 aaPredicted RBP11.12□□□□□ -0.63
LIG1-219ENST00000600055 HLA-DRB4X5D2U9 266 aa11.12□□□□□ -0.63
LIG1-219ENST00000600055 AGRNO00468 2067 aa11.12□□□□□ -0.63
LIG1-219ENST00000600055 PRB4P10163 310 aaPredicted RBP11.11□□□□□ -0.63
LIG1-219ENST00000600055 SPP1P10451 314 aa11.11□□□□□ -0.63
LIG1-219ENST00000600055 SAMD13Q5VXD3 122 aa11.11□□□□□ -0.63
LIG1-219ENST00000600055 MORN3Q6PF18 240 aaPredicted RBP11.11□□□□□ -0.63
LIG1-219ENST00000600055 FOXI2Q6ZQN5 318 aa11.11□□□□□ -0.63
LIG1-219ENST00000600055 BPIFA4PQ86YQ2 179 aa11.11□□□□□ -0.63
LIG1-219ENST00000600055 MUC7Q8TAX7 377 aa11.11□□□□□ -0.63
LIG1-219ENST00000600055 RPRMQ9NS64 109 aa11.11□□□□□ -0.63
LIG1-219ENST00000600055 CLEC5AQ9NY25 188 aa11.11□□□□□ -0.63
LIG1-219ENST00000600055 RFNGQ9Y644 331 aa11.11□□□□□ -0.63
LIG1-219ENST00000600055 FXYD6-FXYD2A0A087WZ82 144 aa11.1□□□□□ -0.63
LIG1-219ENST00000600055 IFNA5P01569 189 aa11.1□□□□□ -0.63
LIG1-219ENST00000600055 SPATA31B1PQ5VZV4 182 aa11.1□□□□□ -0.63
LIG1-219ENST00000600055 ZNF709Q8N972 641 aa11.1□□□□□ -0.63
LIG1-219ENST00000600055 GATAD1Q8WUU5 269 aa11.1□□□□□ -0.63
LIG1-219ENST00000600055 RNF24Q9Y225 148 aa11.1□□□□□ -0.63
LIG1-219ENST00000600055 STAB2Q8WWQ8 2551 aa11.1□□□□□ -0.63
LIG1-219ENST00000600055 DNAH7Q8WXX0 4024 aa11.09□□□□□ -0.63
LIG1-219ENST00000600055 A0A0J9YWU9 116 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms