RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 GNPNAT1Q96EK6 184 aaPredicted RBP10.34□□□□□ -0.75
SHKBP1-218ENST00000598907 PUS1Q9Y606 427 aaKnown RBP eCLIP10.34□□□□□ -0.75
SHKBP1-218ENST00000598907 HSPG2P98160 4391 aa10.33□□□□□ -0.76
SHKBP1-218ENST00000598907 IGHV3-35A0A0C4DH35 117 aa10.33□□□□□ -0.76
SHKBP1-218ENST00000598907 YIF1AO95070 293 aa10.33□□□□□ -0.76
SHKBP1-218ENST00000598907 TPT1P13693 172 aaKnown RBP10.33□□□□□ -0.76
SHKBP1-218ENST00000598907 FAM106AQ4KMX7 169 aa10.33□□□□□ -0.76
SHKBP1-218ENST00000598907 PXDC1Q5TGL8 231 aa10.33□□□□□ -0.76
SHKBP1-218ENST00000598907 UNQ9165/PRO28630Q6UXU0 137 aa10.33□□□□□ -0.76
SHKBP1-218ENST00000598907 LINC00336Q6ZUF6 198 aa10.33□□□□□ -0.76
SHKBP1-218ENST00000598907 ZNF709Q8N972 641 aa10.33□□□□□ -0.76
SHKBP1-218ENST00000598907 PHLDA1Q8WV24 401 aaPredicted RBP10.33□□□□□ -0.76
SHKBP1-218ENST00000598907 TMEM190Q8WZ59 177 aa10.33□□□□□ -0.76
SHKBP1-218ENST00000598907 ST8SIA2Q92186 375 aa10.33□□□□□ -0.76
SHKBP1-218ENST00000598907 SH3BGRL3Q9H299 93 aa10.33□□□□□ -0.76
SHKBP1-218ENST00000598907 KCNIP2Q9NS61 270 aa10.33□□□□□ -0.76
SHKBP1-218ENST00000598907 SLC39A9Q9NUM3 307 aa10.33□□□□□ -0.76
SHKBP1-218ENST00000598907 PXMP4Q9Y6I8 212 aa10.33□□□□□ -0.76
SHKBP1-218ENST00000598907 DNAH17Q9UFH2 4485 aa10.33□□□□□ -0.76
SHKBP1-218ENST00000598907 OR11H12B2RN74 326 aa10.32□□□□□ -0.76
SHKBP1-218ENST00000598907 K7EMT4 169 aa10.32□□□□□ -0.76
SHKBP1-218ENST00000598907 SEC11BP0C7V7 166 aa10.32□□□□□ -0.76
SHKBP1-218ENST00000598907 B2MP61769 119 aa10.32□□□□□ -0.76
SHKBP1-218ENST00000598907 SERF2P84101 59 aa10.32□□□□□ -0.76
SHKBP1-218ENST00000598907 USF2Q15853 346 aaPredicted RBP10.32□□□□□ -0.76
SHKBP1-218ENST00000598907 PATE2Q6UY27 113 aa10.32□□□□□ -0.76
SHKBP1-218ENST00000598907 RNF125Q96EQ8 232 aa10.32□□□□□ -0.76
SHKBP1-218ENST00000598907 MRPL27Q9P0M9 148 aaKnown RBP10.32□□□□□ -0.76
SHKBP1-218ENST00000598907 A8MWP6 167 aa10.31□□□□□ -0.76
SHKBP1-218ENST00000598907 IL4P05112 153 aa10.31□□□□□ -0.76
SHKBP1-218ENST00000598907 ELLP55199 621 aaPredicted RBP10.31□□□□□ -0.76
SHKBP1-218ENST00000598907 SLC25A32Q9H2D1 315 aa10.31□□□□□ -0.76
SHKBP1-218ENST00000598907 CSN3P07498 182 aa10.3□□□□□ -0.76
SHKBP1-218ENST00000598907 GUCA2BQ16661 112 aa10.3□□□□□ -0.76
SHKBP1-218ENST00000598907 FFAR4Q5NUL3 377 aa10.3□□□□□ -0.76
SHKBP1-218ENST00000598907 Q6ZRG5 221 aa10.3□□□□□ -0.76
SHKBP1-218ENST00000598907 TMEM37Q8WXS4 190 aa10.3□□□□□ -0.76
SHKBP1-218ENST00000598907 U3KQE9 123 aa10.3□□□□□ -0.76
SHKBP1-218ENST00000598907 IGHV3OR16-8A0A075B7F1 116 aa10.29□□□□□ -0.76
SHKBP1-218ENST00000598907 ELOA3CA0A087WX78 387 aaPredicted RBP10.29□□□□□ -0.76
SHKBP1-218ENST00000598907 HYPMO75409 117 aa10.29□□□□□ -0.76
SHKBP1-218ENST00000598907 C8orf88P0DMB2 117 aa10.29□□□□□ -0.76
SHKBP1-218ENST00000598907 CRYBB3P26998 211 aa10.29□□□□□ -0.76
SHKBP1-218ENST00000598907 LYZP61626 148 aa10.29□□□□□ -0.76
SHKBP1-218ENST00000598907 GCSAMLQ5JQS6 135 aa10.29□□□□□ -0.76
SHKBP1-218ENST00000598907 ZNF575Q86XF7 245 aa10.29□□□□□ -0.76
SHKBP1-218ENST00000598907 OR1L4Q8NGR5 311 aa10.29□□□□□ -0.76
SHKBP1-218ENST00000598907 PHYHIPLQ96FC7 376 aa10.29□□□□□ -0.76
SHKBP1-218ENST00000598907 VSIRQ9H7M9 311 aa10.29□□□□□ -0.76
SHKBP1-218ENST00000598907 DNAJC4Q9NNZ3 241 aa10.29□□□□□ -0.76
SHKBP1-218ENST00000598907 DAZ1Q9NQZ3 744 aaKnown RBP10.29□□□□□ -0.76
SHKBP1-218ENST00000598907 UFC1Q9Y3C8 167 aa10.29□□□□□ -0.76
SHKBP1-218ENST00000598907 PKD1P98161 4303 aa10.29□□□□□ -0.76
SHKBP1-218ENST00000598907 ZNF320A2RRD8 509 aa10.28□□□□□ -0.76
SHKBP1-218ENST00000598907 TMEM213A2RRL7 107 aa10.28□□□□□ -0.76
SHKBP1-218ENST00000598907 PRSS29PA6NIE9 313 aa10.28□□□□□ -0.76
SHKBP1-218ENST00000598907 MBP02144 154 aa10.28□□□□□ -0.76
SHKBP1-218ENST00000598907 OR5G3P0C626 314 aa10.28□□□□□ -0.76
SHKBP1-218ENST00000598907 ORM2P19652 201 aa10.28□□□□□ -0.76
SHKBP1-218ENST00000598907 M6PRP20645 277 aa10.28□□□□□ -0.76
SHKBP1-218ENST00000598907 ACOT6Q3I5F7 207 aaPredicted RBP10.28□□□□□ -0.76
SHKBP1-218ENST00000598907 CD300EQ496F6 205 aaPredicted RBP10.28□□□□□ -0.76
SHKBP1-218ENST00000598907 TM4SF20Q53R12 229 aa10.28□□□□□ -0.76
SHKBP1-218ENST00000598907 OR1B1Q8NGR6 318 aa10.28□□□□□ -0.76
SHKBP1-218ENST00000598907 TMED6Q8WW62 240 aa10.28□□□□□ -0.76
SHKBP1-218ENST00000598907 PFDN5Q99471 154 aa10.28□□□□□ -0.76
SHKBP1-218ENST00000598907 C20orf24Q9BUV8 137 aa10.28□□□□□ -0.76
SHKBP1-218ENST00000598907 RABAC1Q9UI14 185 aa10.28□□□□□ -0.76
SHKBP1-218ENST00000598907 C2orf70A6NJV1 201 aa10.27□□□□□ -0.77
SHKBP1-218ENST00000598907 H3BRN7 92 aa10.27□□□□□ -0.77
SHKBP1-218ENST00000598907 COX7A2P2O60397 106 aa10.27□□□□□ -0.77
SHKBP1-218ENST00000598907 EDN2P20800 178 aa10.27□□□□□ -0.77
SHKBP1-218ENST00000598907 NPPCP23582 126 aa10.27□□□□□ -0.77
SHKBP1-218ENST00000598907 RAB2AP61019 212 aa10.27□□□□□ -0.77
SHKBP1-218ENST00000598907 TMEM41BQ5BJD5 291 aa10.27□□□□□ -0.77
SHKBP1-218ENST00000598907 C10orf113Q5VZT2 155 aa10.27□□□□□ -0.77
SHKBP1-218ENST00000598907 EIF5AL1Q6IS14 154 aaKnown RBP10.27□□□□□ -0.77
SHKBP1-218ENST00000598907 METTL26Q96S19 204 aa10.27□□□□□ -0.77
SHKBP1-218ENST00000598907 PBDC1Q9BVG4 233 aa10.27□□□□□ -0.77
SHKBP1-218ENST00000598907 SLC25A39Q9BZJ4 359 aaPredicted RBP10.27□□□□□ -0.77
SHKBP1-218ENST00000598907 RPRMQ9NS64 109 aa10.27□□□□□ -0.77
SHKBP1-218ENST00000598907 DOK5Q9P104 306 aa10.27□□□□□ -0.77
SHKBP1-218ENST00000598907 PEMTQ9UBM1 199 aa10.27□□□□□ -0.77
SHKBP1-218ENST00000598907 SMPXQ9UHP9 88 aa10.27□□□□□ -0.77
SHKBP1-218ENST00000598907 HIGD1AQ9Y241 93 aa10.27□□□□□ -0.77
SHKBP1-218ENST00000598907 SELENOKQ9Y6D0 94 aa10.27□□□□□ -0.77
SHKBP1-218ENST00000598907 IGHV7-4-1A0A0J9YVY3 117 aa10.26□□□□□ -0.77
SHKBP1-218ENST00000598907 UMAD1C9J7I0 102 aa10.26□□□□□ -0.77
SHKBP1-218ENST00000598907 ZNF207O43670 478 aaKnown RBP10.26□□□□□ -0.77
SHKBP1-218ENST00000598907 BUB3O43684 328 aa10.26□□□□□ -0.77
SHKBP1-218ENST00000598907 APOHP02749 345 aaPredicted RBP10.26□□□□□ -0.77
SHKBP1-218ENST00000598907 CBLN1P23435 193 aa10.26□□□□□ -0.77
SHKBP1-218ENST00000598907 DEFB135Q30KP9 77 aa10.26□□□□□ -0.77
SHKBP1-218ENST00000598907 TEX261Q6UWH6 196 aa10.26□□□□□ -0.77
SHKBP1-218ENST00000598907 OR10G4Q8NGN3 311 aa10.26□□□□□ -0.77
SHKBP1-218ENST00000598907 OR10G9Q8NGN4 311 aa10.26□□□□□ -0.77
SHKBP1-218ENST00000598907 OR10G7Q8NGN6 311 aa10.26□□□□□ -0.77
SHKBP1-218ENST00000598907 DYNLRB2Q8TF09 96 aa10.26□□□□□ -0.77
SHKBP1-218ENST00000598907 MARC2Q969Z3 335 aa10.26□□□□□ -0.77
SHKBP1-218ENST00000598907 RNF183Q96D59 192 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms