RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 SMLR1H3BR10 107 aa10.47□□□□□ -0.73
SHKBP1-217ENST00000598558 SNRPCP09234 159 aaKnown RBP10.47□□□□□ -0.73
SHKBP1-217ENST00000598558 NUP62P37198 522 aaPredicted RBP10.47□□□□□ -0.73
SHKBP1-217ENST00000598558 RAB31Q13636 194 aa10.47□□□□□ -0.73
SHKBP1-217ENST00000598558 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.47□□□□□ -0.73
SHKBP1-217ENST00000598558 LINC00305Q7Z4B0 112 aa10.47□□□□□ -0.73
SHKBP1-217ENST00000598558 C20orf173Q96LM9 149 aa10.47□□□□□ -0.73
SHKBP1-217ENST00000598558 ATP5SQ99766 215 aa10.47□□□□□ -0.73
SHKBP1-217ENST00000598558 DNAJC4Q9NNZ3 241 aa10.47□□□□□ -0.73
SHKBP1-217ENST00000598558 FBXL17Q9UF56 701 aa10.47□□□□□ -0.73
SHKBP1-217ENST00000598558 CMC4P56277 68 aaPredicted RBP10.46□□□□□ -0.73
SHKBP1-217ENST00000598558 B2MP61769 119 aa10.46□□□□□ -0.73
SHKBP1-217ENST00000598558 PSMG4Q5JS54 123 aa10.46□□□□□ -0.73
SHKBP1-217ENST00000598558 PXDC1Q5TGL8 231 aa10.46□□□□□ -0.73
SHKBP1-217ENST00000598558 IGFL4Q6B9Z1 124 aa10.46□□□□□ -0.73
SHKBP1-217ENST00000598558 OR2T35Q8NGX2 323 aa10.46□□□□□ -0.73
SHKBP1-217ENST00000598558 TRAV8-2A0A0B4J237 113 aa10.45□□□□□ -0.74
SHKBP1-217ENST00000598558 RNF222A6NCQ9 220 aa10.45□□□□□ -0.74
SHKBP1-217ENST00000598558 COX7A2P2O60397 106 aa10.45□□□□□ -0.74
SHKBP1-217ENST00000598558 MPDU1O75352 247 aa10.45□□□□□ -0.74
SHKBP1-217ENST00000598558 C10orf113Q5VZT2 155 aa10.45□□□□□ -0.74
SHKBP1-217ENST00000598558 SPATA31B1PQ5VZV4 182 aa10.45□□□□□ -0.74
SHKBP1-217ENST00000598558 Q6ZNX1 250 aa10.45□□□□□ -0.74
SHKBP1-217ENST00000598558 ASB13Q8WXK3 278 aa10.45□□□□□ -0.74
SHKBP1-217ENST00000598558 AQP10Q96PS8 301 aa10.45□□□□□ -0.74
SHKBP1-217ENST00000598558 U3KQK5 164 aa10.45□□□□□ -0.74
SHKBP1-217ENST00000598558 ELOA3CA0A087WX78 387 aaPredicted RBP10.44□□□□□ -0.74
SHKBP1-217ENST00000598558 GIG44P09565 113 aaPredicted RBP10.44□□□□□ -0.74
SHKBP1-217ENST00000598558 PRB4P10163 310 aaPredicted RBP10.44□□□□□ -0.74
SHKBP1-217ENST00000598558 HLA-DMBP28068 263 aa10.44□□□□□ -0.74
SHKBP1-217ENST00000598558 GALR1P47211 349 aa10.44□□□□□ -0.74
SHKBP1-217ENST00000598558 FGL1Q08830 312 aa10.44□□□□□ -0.74
SHKBP1-217ENST00000598558 GDF5OSQ5U4N7 250 aa10.44□□□□□ -0.74
SHKBP1-217ENST00000598558 Q6ZRG5 221 aa10.44□□□□□ -0.74
SHKBP1-217ENST00000598558 RCHY1Q96PM5 261 aa10.44□□□□□ -0.74
SHKBP1-217ENST00000598558 SEPSECSQ9HD40 501 aaKnown RBP10.44□□□□□ -0.74
SHKBP1-217ENST00000598558 TNFSF18Q9UNG2 199 aa10.44□□□□□ -0.74
SHKBP1-217ENST00000598558 TENM3Q9P273 2699 aa10.44□□□□□ -0.74
SHKBP1-217ENST00000598558 FXYD6-FXYD2A0A087WZ82 144 aa10.43□□□□□ -0.74
SHKBP1-217ENST00000598558 H3BQ15 152 aa10.43□□□□□ -0.74
SHKBP1-217ENST00000598558 H3BTX0 84 aa10.43□□□□□ -0.74
SHKBP1-217ENST00000598558 ACTL10Q5JWF8 245 aa10.43□□□□□ -0.74
SHKBP1-217ENST00000598558 TRPT1Q86TN4 253 aaKnown RBP10.43□□□□□ -0.74
SHKBP1-217ENST00000598558 OR11H4Q8NGC9 324 aa10.43□□□□□ -0.74
SHKBP1-217ENST00000598558 LINC00052Q96N35 136 aa10.43□□□□□ -0.74
SHKBP1-217ENST00000598558 GPR82Q96P67 336 aa10.43□□□□□ -0.74
SHKBP1-217ENST00000598558 OVOL2Q9BRP0 275 aa10.43□□□□□ -0.74
SHKBP1-217ENST00000598558 F6UB75 175 aa10.42□□□□□ -0.74
SHKBP1-217ENST00000598558 EIF3GO75821 320 aaKnown RBP eCLIP10.42□□□□□ -0.74
SHKBP1-217ENST00000598558 RPL7P18124 248 aaKnown RBP10.42□□□□□ -0.74
SHKBP1-217ENST00000598558 RNF182Q8N6D2 247 aa10.42□□□□□ -0.74
SHKBP1-217ENST00000598558 OR1L4Q8NGR5 311 aa10.42□□□□□ -0.74
SHKBP1-217ENST00000598558 C16orf92Q96LL3 132 aa10.42□□□□□ -0.74
SHKBP1-217ENST00000598558 SPATA25Q9BR10 227 aa10.42□□□□□ -0.74
SHKBP1-217ENST00000598558 PARD6GQ9BYG4 376 aaPredicted RBP10.42□□□□□ -0.74
SHKBP1-217ENST00000598558 ZMAT4Q9H898 229 aa10.42□□□□□ -0.74
SHKBP1-217ENST00000598558 NBEAL2Q6ZNJ1 2754 aa10.42□□□□□ -0.74
SHKBP1-217ENST00000598558 A0A087X0K7 114 aa10.41□□□□□ -0.74
SHKBP1-217ENST00000598558 KIR2DL5BA0A0G2JN68 375 aa10.41□□□□□ -0.74
SHKBP1-217ENST00000598558 KIR2DL5BA0A0G2JPC4 375 aa10.41□□□□□ -0.74
SHKBP1-217ENST00000598558 H3BMM0 161 aa10.41□□□□□ -0.74
SHKBP1-217ENST00000598558 ISLRO14498 428 aa10.41□□□□□ -0.74
SHKBP1-217ENST00000598558 IFNA5P01569 189 aa10.41□□□□□ -0.74
SHKBP1-217ENST00000598558 IGLC2P0DOY2 106 aa10.41□□□□□ -0.74
SHKBP1-217ENST00000598558 PSMB3P49720 205 aa10.41□□□□□ -0.74
SHKBP1-217ENST00000598558 SNRPD3P62318 126 aaKnown RBP10.41□□□□□ -0.74
SHKBP1-217ENST00000598558 MIR17HGQ75NE6 70 aa10.41□□□□□ -0.74
SHKBP1-217ENST00000598558 KIR2DL5AQ8N109 375 aa10.41□□□□□ -0.74
SHKBP1-217ENST00000598558 KIR2DL5BQ8NHK3 375 aa10.41□□□□□ -0.74
SHKBP1-217ENST00000598558 GATAD1Q8WUU5 269 aa10.41□□□□□ -0.74
SHKBP1-217ENST00000598558 FAM167A-AS1Q96KT0 104 aa10.41□□□□□ -0.74
SHKBP1-217ENST00000598558 CSTL1Q9H114 145 aa10.41□□□□□ -0.74
SHKBP1-217ENST00000598558 SLC17A3O00476 420 aa10.4□□□□□ -0.74
SHKBP1-217ENST00000598558 ATF4P18848 351 aaPredicted RBP10.4□□□□□ -0.74
SHKBP1-217ENST00000598558 S100A7P31151 101 aa10.4□□□□□ -0.74
SHKBP1-217ENST00000598558 ID1P41134 155 aa10.4□□□□□ -0.74
SHKBP1-217ENST00000598558 DEFB135Q30KP9 77 aa10.4□□□□□ -0.74
SHKBP1-217ENST00000598558 FFAR4Q5NUL3 377 aa10.4□□□□□ -0.74
SHKBP1-217ENST00000598558 FAM78BQ5VT40 261 aa10.4□□□□□ -0.74
SHKBP1-217ENST00000598558 STHQ8IWL8 128 aa10.4□□□□□ -0.74
SHKBP1-217ENST00000598558 ZNF709Q8N972 641 aa10.4□□□□□ -0.74
SHKBP1-217ENST00000598558 SCGB1C1Q8TD33 95 aa10.4□□□□□ -0.74
SHKBP1-217ENST00000598558 SAT2Q96F10 170 aaPredicted RBP10.4□□□□□ -0.74
SHKBP1-217ENST00000598558 PFDN5Q99471 154 aa10.4□□□□□ -0.74
SHKBP1-217ENST00000598558 SLC25A2Q9BXI2 301 aa10.4□□□□□ -0.74
SHKBP1-217ENST00000598558 ZNF586Q9NXT0 402 aa10.4□□□□□ -0.74
SHKBP1-217ENST00000598558 PYYP10082 97 aa10.39□□□□□ -0.75
SHKBP1-217ENST00000598558 C4BPBP20851 252 aa10.39□□□□□ -0.75
SHKBP1-217ENST00000598558 MEOX2P50222 304 aa10.39□□□□□ -0.75
SHKBP1-217ENST00000598558 APOC4P55056 127 aa10.39□□□□□ -0.75
SHKBP1-217ENST00000598558 RPL7L1Q6DKI1 246 aaKnown RBP10.39□□□□□ -0.75
SHKBP1-217ENST00000598558 BPIFA4PQ86YQ2 179 aa10.39□□□□□ -0.75
SHKBP1-217ENST00000598558 ST6GAL2Q96JF0 529 aa10.39□□□□□ -0.75
SHKBP1-217ENST00000598558 SAV1Q9H4B6 383 aaPredicted RBP10.39□□□□□ -0.75
SHKBP1-217ENST00000598558 A0A0J9YX75 114 aa10.38□□□□□ -0.75
SHKBP1-217ENST00000598558 C17orf112F2Z3M2 114 aa10.38□□□□□ -0.75
SHKBP1-217ENST00000598558 UBE2CO00762 179 aa10.38□□□□□ -0.75
SHKBP1-217ENST00000598558 ARPC5O15511 151 aa10.38□□□□□ -0.75
SHKBP1-217ENST00000598558 IGKV3-20P01619 116 aa10.38□□□□□ -0.75
SHKBP1-217ENST00000598558 ZNF705DP0CH99 300 aaPredicted RBP10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms