RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 GRAMD2BQ96HH9 432 aa12.28□□□□□ -0.44
UPF1-204ENST00000596842 EPDR1Q9UM22 224 aa12.28□□□□□ -0.44
UPF1-204ENST00000596842 FAM231BA6NCW3 169 aa12.28□□□□□ -0.44
UPF1-204ENST00000596842 MBD3L4A6NDZ8 208 aaPredicted RBP12.28□□□□□ -0.44
UPF1-204ENST00000596842 MBD3L3A6NE82 208 aaPredicted RBP12.28□□□□□ -0.44
UPF1-204ENST00000596842 MBD3L5A6NJ08 208 aaPredicted RBP12.28□□□□□ -0.44
UPF1-204ENST00000596842 CIARTQ8N365 385 aaPredicted RBP12.28□□□□□ -0.44
UPF1-204ENST00000596842 MBD3L2Q8NHZ7 208 aaPredicted RBP12.28□□□□□ -0.44
UPF1-204ENST00000596842 ATRXP46100 2492 aa12.28□□□□□ -0.44
UPF1-204ENST00000596842 TMSB15BA0A087X1C1 80 aa12.28□□□□□ -0.44
UPF1-204ENST00000596842 TRAV8-6A0A0B4J262 113 aa12.28□□□□□ -0.44
UPF1-204ENST00000596842 VWC2LB2RUY7 222 aa12.28□□□□□ -0.44
UPF1-204ENST00000596842 BSPH1Q075Z2 132 aa12.28□□□□□ -0.44
UPF1-204ENST00000596842 LRRC10Q5BKY1 277 aa12.28□□□□□ -0.44
UPF1-204ENST00000596842 C19orf24Q9BVV8 132 aa12.28□□□□□ -0.44
UPF1-204ENST00000596842 IGLV3-9A0A075B6K5 115 aa12.27□□□□□ -0.44
UPF1-204ENST00000596842 GOLT1AQ6ZVE7 132 aa12.27□□□□□ -0.44
UPF1-204ENST00000596842 CACNG8Q8WXS5 425 aa12.27□□□□□ -0.44
UPF1-204ENST00000596842 FXYD5Q96DB9 178 aa12.27□□□□□ -0.44
UPF1-204ENST00000596842 PPIAL4CA0A0B4J2A2 164 aa12.27□□□□□ -0.45
UPF1-204ENST00000596842 PPIAL4GP0DN37 164 aa12.27□□□□□ -0.45
UPF1-204ENST00000596842 POU2AF1Q16633 256 aa12.27□□□□□ -0.45
UPF1-204ENST00000596842 COX19Q49B96 90 aa12.27□□□□□ -0.45
UPF1-204ENST00000596842 ANKHD1Q8IWZ3 2542 aaKnown RBP12.27□□□□□ -0.45
UPF1-204ENST00000596842 PPBPP02775 128 aa12.27□□□□□ -0.45
UPF1-204ENST00000596842 C5orf17Q8NAS9 161 aa12.27□□□□□ -0.45
UPF1-204ENST00000596842 TMEM191AQ9H0A3 160 aa12.27□□□□□ -0.45
UPF1-204ENST00000596842 KLK10O43240 276 aa12.26□□□□□ -0.45
UPF1-204ENST00000596842 CLEC3BP05452 202 aa12.26□□□□□ -0.45
UPF1-204ENST00000596842 NMUP48645 174 aa12.26□□□□□ -0.45
UPF1-204ENST00000596842 VSTM2AQ8TAG5 236 aa12.26□□□□□ -0.45
UPF1-204ENST00000596842 OR2K2Q8NGT1 345 aa12.26□□□□□ -0.45
UPF1-204ENST00000596842 C17orf100A8MU93 164 aa12.26□□□□□ -0.45
UPF1-204ENST00000596842 OR5AL1P0C617 328 aa12.26□□□□□ -0.45
UPF1-204ENST00000596842 CTRLP40313 264 aa12.26□□□□□ -0.45
UPF1-204ENST00000596842 MEF2CQ06413 473 aaPredicted RBP12.26□□□□□ -0.45
UPF1-204ENST00000596842 SVIPQ8NHG7 77 aa12.26□□□□□ -0.45
UPF1-204ENST00000596842 ASH1LQ9NR48 2969 aaKnown RBP12.26□□□□□ -0.45
UPF1-204ENST00000596842 TM4SF5O14894 197 aa12.25□□□□□ -0.45
UPF1-204ENST00000596842 GCSHP23434 173 aa12.25□□□□□ -0.45
UPF1-204ENST00000596842 SFTA2Q6UW10 78 aa12.25□□□□□ -0.45
UPF1-204ENST00000596842 OR8A1Q8NGG7 326 aa12.25□□□□□ -0.45
UPF1-204ENST00000596842 Q9H3A6 140 aa12.25□□□□□ -0.45
UPF1-204ENST00000596842 IGKV1D-37A0A075B6S9 117 aa12.25□□□□□ -0.45
UPF1-204ENST00000596842 CGB1A6NKQ9 187 aa12.25□□□□□ -0.45
UPF1-204ENST00000596842 HBBP68871 147 aa12.25□□□□□ -0.45
UPF1-204ENST00000596842 ANXA2RQ3ZCQ2 193 aa12.25□□□□□ -0.45
UPF1-204ENST00000596842 ZNF833PQ6ZTB9 187 aa12.25□□□□□ -0.45
UPF1-204ENST00000596842 GPR82Q96P67 336 aa12.25□□□□□ -0.45
UPF1-204ENST00000596842 FBXL15Q9H469 300 aa12.25□□□□□ -0.45
UPF1-204ENST00000596842 LEPROTL1O95214 131 aa12.25□□□□□ -0.45
UPF1-204ENST00000596842 RPL27AP46776 148 aaKnown RBP12.25□□□□□ -0.45
UPF1-204ENST00000596842 SPATA12Q7Z6I5 190 aa12.25□□□□□ -0.45
UPF1-204ENST00000596842 FAM222BQ8WU58 562 aa12.25□□□□□ -0.45
UPF1-204ENST00000596842 SS18L2Q9UHA2 77 aa12.25□□□□□ -0.45
UPF1-204ENST00000596842 CRYBA4P53673 196 aa12.24□□□□□ -0.45
UPF1-204ENST00000596842 ADIPOQQ15848 244 aa12.24□□□□□ -0.45
UPF1-204ENST00000596842 OR5AN1Q8NGI8 311 aa12.24□□□□□ -0.45
UPF1-204ENST00000596842 OR10AG1Q8NH19 301 aa12.24□□□□□ -0.45
UPF1-204ENST00000596842 TSSC4Q9Y5U2 329 aaPredicted RBP12.24□□□□□ -0.45
UPF1-204ENST00000596842 GATA4P43694 442 aa12.24□□□□□ -0.45
UPF1-204ENST00000596842 TMEM70Q9BUB7 260 aa12.24□□□□□ -0.45
UPF1-204ENST00000596842 RPP21Q9H633 154 aaKnown RBP12.24□□□□□ -0.45
UPF1-204ENST00000596842 SERTM2A0A1B0GWG4 89 aa12.24□□□□□ -0.45
UPF1-204ENST00000596842 A8MWL6 223 aa12.24□□□□□ -0.45
UPF1-204ENST00000596842 FNDC10F2Z333 226 aa12.24□□□□□ -0.45
UPF1-204ENST00000596842 FABP2P12104 132 aa12.24□□□□□ -0.45
UPF1-204ENST00000596842 FXYD7P58549 80 aa12.24□□□□□ -0.45
UPF1-204ENST00000596842 LOC389332A0A1B0GUA5 103 aa12.23□□□□□ -0.45
UPF1-204ENST00000596842 C16orf97H3BN30 126 aa12.23□□□□□ -0.45
UPF1-204ENST00000596842 MC5RP33032 325 aa12.23□□□□□ -0.45
UPF1-204ENST00000596842 PNKDQ8N490 385 aa12.23□□□□□ -0.45
UPF1-204ENST00000596842 OR4A5Q8NH83 315 aa12.23□□□□□ -0.45
UPF1-204ENST00000596842 INSIG2Q9Y5U4 225 aa12.23□□□□□ -0.45
UPF1-204ENST00000596842 CUL9Q8IWT3 2517 aa12.23□□□□□ -0.45
UPF1-204ENST00000596842 PSMB11A5LHX3 300 aa12.23□□□□□ -0.45
UPF1-204ENST00000596842 FCN3O75636 299 aa12.23□□□□□ -0.45
UPF1-204ENST00000596842 MRPL52Q86TS9 123 aaKnown RBP12.23□□□□□ -0.45
UPF1-204ENST00000596842 TMEM167AQ8TBQ9 72 aa12.23□□□□□ -0.45
UPF1-204ENST00000596842 A6NDN8 102 aa12.23□□□□□ -0.45
UPF1-204ENST00000596842 SRSF12Q8WXF0 261 aaKnown RBP12.23□□□□□ -0.45
UPF1-204ENST00000596842 CTSZQ9UBR2 303 aa12.23□□□□□ -0.45
UPF1-204ENST00000596842 GTSF1Q8WW33 167 aa12.22□□□□□ -0.45
UPF1-204ENST00000596842 IGHV3OR16-8A0A075B7F1 116 aa12.22□□□□□ -0.45
UPF1-204ENST00000596842 GPR183P32249 361 aa12.22□□□□□ -0.45
UPF1-204ENST00000596842 JKAMPQ9P055 326 aa12.22□□□□□ -0.45
UPF1-204ENST00000596842 IGLC7A0M8Q6 106 aa12.22□□□□□ -0.45
UPF1-204ENST00000596842 KLF17Q5JT82 389 aaPredicted RBP12.22□□□□□ -0.45
UPF1-204ENST00000596842 CFAP161Q6P656 301 aa12.22□□□□□ -0.45
UPF1-204ENST00000596842 C17orf77Q96MU5 243 aa12.22□□□□□ -0.45
UPF1-204ENST00000596842 MRPS16Q9Y3D3 137 aaKnown RBP12.22□□□□□ -0.45
UPF1-204ENST00000596842 ATP6V0BQ99437 205 aa12.21□□□□□ -0.45
UPF1-204ENST00000596842 HSPB8Q9UJY1 196 aa12.21□□□□□ -0.45
UPF1-204ENST00000596842 IGHV3-35A0A0C4DH35 117 aa12.21□□□□□ -0.46
UPF1-204ENST00000596842 PRRG2O14669 202 aa12.21□□□□□ -0.46
UPF1-204ENST00000596842 MBD6Q96DN6 1003 aa12.21□□□□□ -0.46
UPF1-204ENST00000596842 MRPL27Q9P0M9 148 aaKnown RBP12.21□□□□□ -0.46
UPF1-204ENST00000596842 HIGD1AQ9Y241 93 aa12.21□□□□□ -0.46
UPF1-204ENST00000596842 TCRAP04437 139 aa12.2□□□□□ -0.46
UPF1-204ENST00000596842 RBPJQ06330 500 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms