RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 ASB13Q8WXK3 278 aa11.09□□□□□ -0.63
UPF1-202ENST00000594243 SCRT1Q9BWW7 348 aa11.09□□□□□ -0.63
UPF1-202ENST00000594243 LYL1P12980 280 aa11.08□□□□□ -0.64
UPF1-202ENST00000594243 RPL12P30050 165 aaKnown RBP11.08□□□□□ -0.64
UPF1-202ENST00000594243 PSMB3P49720 205 aa11.08□□□□□ -0.64
UPF1-202ENST00000594243 PRR20EP86478 221 aa11.08□□□□□ -0.64
UPF1-202ENST00000594243 PRR20CP86479 221 aa11.08□□□□□ -0.64
UPF1-202ENST00000594243 PRR20DP86480 221 aa11.08□□□□□ -0.64
UPF1-202ENST00000594243 PRR20BP86481 221 aa11.08□□□□□ -0.64
UPF1-202ENST00000594243 PRR20AP86496 221 aa11.08□□□□□ -0.64
UPF1-202ENST00000594243 FGL1Q08830 312 aa11.08□□□□□ -0.64
UPF1-202ENST00000594243 C10orf113Q5VZT2 155 aa11.08□□□□□ -0.64
UPF1-202ENST00000594243 MIC13Q5XKP0 118 aa11.08□□□□□ -0.64
UPF1-202ENST00000594243 LINC00305Q7Z4B0 112 aa11.08□□□□□ -0.64
UPF1-202ENST00000594243 OR1L4Q8NGR5 311 aa11.08□□□□□ -0.64
UPF1-202ENST00000594243 UHRF2Q96PU4 802 aa11.08□□□□□ -0.64
UPF1-202ENST00000594243 RSG1Q9BU20 258 aa11.08□□□□□ -0.64
UPF1-202ENST00000594243 DNAJC4Q9NNZ3 241 aa11.08□□□□□ -0.64
UPF1-202ENST00000594243 MBD2Q9UBB5 411 aa11.08□□□□□ -0.64
UPF1-202ENST00000594243 TP53TG1Q9Y2A0 90 aa11.08□□□□□ -0.64
UPF1-202ENST00000594243 ISLRO14498 428 aa11.07□□□□□ -0.64
UPF1-202ENST00000594243 B2MP61769 119 aa11.07□□□□□ -0.64
UPF1-202ENST00000594243 OPCMLQ14982 345 aa11.07□□□□□ -0.64
UPF1-202ENST00000594243 TMEM37Q8WXS4 190 aa11.07□□□□□ -0.64
UPF1-202ENST00000594243 C16orf92Q96LL3 132 aa11.07□□□□□ -0.64
UPF1-202ENST00000594243 PFDN5Q99471 154 aa11.07□□□□□ -0.64
UPF1-202ENST00000594243 RETNQ9HD89 108 aa11.07□□□□□ -0.64
UPF1-202ENST00000594243 SLC39A9Q9NUM3 307 aa11.07□□□□□ -0.64
UPF1-202ENST00000594243 HSPB11Q9Y547 144 aa11.07□□□□□ -0.64
UPF1-202ENST00000594243 KMT2CQ8NEZ4 4911 aaKnown RBP11.07□□□□□ -0.64
UPF1-202ENST00000594243 KNCNA6PVL3 124 aa11.06□□□□□ -0.64
UPF1-202ENST00000594243 SOCS3O14543 225 aa11.06□□□□□ -0.64
UPF1-202ENST00000594243 SPRY2O43597 315 aa11.06□□□□□ -0.64
UPF1-202ENST00000594243 ATF4P18848 351 aaPredicted RBP11.06□□□□□ -0.64
UPF1-202ENST00000594243 CLINT1Q14677 625 aa11.06□□□□□ -0.64
UPF1-202ENST00000594243 ACTL10Q5JWF8 245 aa11.06□□□□□ -0.64
UPF1-202ENST00000594243 MORN3Q6PF18 240 aaPredicted RBP11.06□□□□□ -0.64
UPF1-202ENST00000594243 TRPT1Q86TN4 253 aaKnown RBP11.06□□□□□ -0.64
UPF1-202ENST00000594243 ZNF709Q8N972 641 aa11.06□□□□□ -0.64
UPF1-202ENST00000594243 LINC00052Q96N35 136 aa11.06□□□□□ -0.64
UPF1-202ENST00000594243 ATP5SQ99766 215 aa11.06□□□□□ -0.64
UPF1-202ENST00000594243 OVOL2Q9BRP0 275 aa11.06□□□□□ -0.64
UPF1-202ENST00000594243 NPCDR1Q9BY65 106 aa11.06□□□□□ -0.64
UPF1-202ENST00000594243 PXMP4Q9Y6I8 212 aa11.06□□□□□ -0.64
UPF1-202ENST00000594243 C17orf112F2Z3M2 114 aa11.05□□□□□ -0.64
UPF1-202ENST00000594243 GIPP09681 153 aaPredicted RBP11.05□□□□□ -0.64
UPF1-202ENST00000594243 SPP1P10451 314 aa11.05□□□□□ -0.64
UPF1-202ENST00000594243 TMEM41BQ5BJD5 291 aa11.05□□□□□ -0.64
UPF1-202ENST00000594243 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.05□□□□□ -0.64
UPF1-202ENST00000594243 BPIFA4PQ86YQ2 179 aa11.05□□□□□ -0.64
UPF1-202ENST00000594243 RNF183Q96D59 192 aa11.05□□□□□ -0.64
UPF1-202ENST00000594243 WDR61Q9GZS3 305 aaKnown RBP11.05□□□□□ -0.64
UPF1-202ENST00000594243 TENM3Q9P273 2699 aa11.05□□□□□ -0.64
UPF1-202ENST00000594243 CA1P00915 261 aaPredicted RBP11.04□□□□□ -0.64
UPF1-202ENST00000594243 IFNA5P01569 189 aa11.04□□□□□ -0.64
UPF1-202ENST00000594243 NUTF2P61970 127 aaKnown RBP11.04□□□□□ -0.64
UPF1-202ENST00000594243 DEFB135Q30KP9 77 aa11.04□□□□□ -0.64
UPF1-202ENST00000594243 SPATA31B1PQ5VZV4 182 aa11.04□□□□□ -0.64
UPF1-202ENST00000594243 LRRC20Q8TCA0 184 aa11.04□□□□□ -0.64
UPF1-202ENST00000594243 SCGB1C1Q8TD33 95 aa11.04□□□□□ -0.64
UPF1-202ENST00000594243 GATAD1Q8WUU5 269 aa11.04□□□□□ -0.64
UPF1-202ENST00000594243 KCNIP2Q9NS61 270 aa11.04□□□□□ -0.64
UPF1-202ENST00000594243 RPRMQ9NS64 109 aa11.04□□□□□ -0.64
UPF1-202ENST00000594243 A0A087X0K7 114 aa11.03□□□□□ -0.64
UPF1-202ENST00000594243 FOXI2Q6ZQN5 318 aa11.03□□□□□ -0.64
UPF1-202ENST00000594243 C17orf77Q96MU5 243 aa11.03□□□□□ -0.64
UPF1-202ENST00000594243 SAV1Q9H4B6 383 aaPredicted RBP11.03□□□□□ -0.64
UPF1-202ENST00000594243 EDA2RQ9HAV5 297 aa11.03□□□□□ -0.64
UPF1-202ENST00000594243 H3BMM0 161 aa11.02□□□□□ -0.65
UPF1-202ENST00000594243 MRPS12O15235 138 aaKnown RBP11.02□□□□□ -0.65
UPF1-202ENST00000594243 HLA-DRB4P13762 266 aa11.02□□□□□ -0.65
UPF1-202ENST00000594243 CXCL2P19875 107 aa11.02□□□□□ -0.65
UPF1-202ENST00000594243 EBLN2Q6P2I7 272 aa11.02□□□□□ -0.65
UPF1-202ENST00000594243 SMIM3Q9BZL3 60 aa11.02□□□□□ -0.65
UPF1-202ENST00000594243 HLA-DRB4X5D2U9 266 aa11.02□□□□□ -0.65
UPF1-202ENST00000594243 MORN5Q5VZ52 161 aa11.01□□□□□ -0.65
UPF1-202ENST00000594243 AQP10Q96PS8 301 aa11.01□□□□□ -0.65
UPF1-202ENST00000594243 C1QTNF4Q9BXJ3 329 aa11.01□□□□□ -0.65
UPF1-202ENST00000594243 PARD6GQ9BYG4 376 aaPredicted RBP11.01□□□□□ -0.65
UPF1-202ENST00000594243 C3orf84H3BNL1 204 aa11□□□□□ -0.65
UPF1-202ENST00000594243 GUK1Q16774 197 aa11□□□□□ -0.65
UPF1-202ENST00000594243 FAM78BQ5VT40 261 aa11□□□□□ -0.65
UPF1-202ENST00000594243 LCN15Q6UWW0 184 aa11□□□□□ -0.65
UPF1-202ENST00000594243 INO80EQ8NBZ0 244 aaPredicted RBP11□□□□□ -0.65
UPF1-202ENST00000594243 MUC7Q8TAX7 377 aa11□□□□□ -0.65
UPF1-202ENST00000594243 C20orf173Q96LM9 149 aa11□□□□□ -0.65
UPF1-202ENST00000594243 CLUHP3Q96NS8 147 aa11□□□□□ -0.65
UPF1-202ENST00000594243 RARRES2Q99969 163 aa11□□□□□ -0.65
UPF1-202ENST00000594243 SLC50A1Q9BRV3 221 aa11□□□□□ -0.65
UPF1-202ENST00000594243 HRH4Q9H3N8 390 aa11□□□□□ -0.65
UPF1-202ENST00000594243 TRAV8-2A0A0B4J237 113 aa10.99□□□□□ -0.65
UPF1-202ENST00000594243 TRAV5A0A0B4J249 113 aa10.99□□□□□ -0.65
UPF1-202ENST00000594243 A0A0J9YX75 114 aa10.99□□□□□ -0.65
UPF1-202ENST00000594243 ZNF266Q14584 549 aa10.99□□□□□ -0.65
UPF1-202ENST00000594243 Q5BKY6 102 aa10.99□□□□□ -0.65
UPF1-202ENST00000594243 GDF5OSQ5U4N7 250 aa10.99□□□□□ -0.65
UPF1-202ENST00000594243 IGFL4Q6B9Z1 124 aa10.99□□□□□ -0.65
UPF1-202ENST00000594243 OR4B1Q8NGF8 309 aa10.99□□□□□ -0.65
UPF1-202ENST00000594243 OR2T35Q8NGX2 323 aa10.99□□□□□ -0.65
UPF1-202ENST00000594243 IL17DQ8TAD2 202 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms