RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 PRR20BP86481 221 aa10.7□□□□□ -0.7
VRK3-206ENST00000594090 PRR20AP86496 221 aa10.7□□□□□ -0.7
VRK3-206ENST00000594090 OPCMLQ14982 345 aa10.7□□□□□ -0.7
VRK3-206ENST00000594090 FCN2Q15485 313 aa10.7□□□□□ -0.7
VRK3-206ENST00000594090 ACTL10Q5JWF8 245 aa10.7□□□□□ -0.7
VRK3-206ENST00000594090 MIC13Q5XKP0 118 aa10.7□□□□□ -0.7
VRK3-206ENST00000594090 MBD2Q9UBB5 411 aa10.7□□□□□ -0.7
VRK3-206ENST00000594090 TENM3Q9P273 2699 aa10.7□□□□□ -0.7
VRK3-206ENST00000594090 SPRY2O43597 315 aa10.69□□□□□ -0.7
VRK3-206ENST00000594090 COX7A2P2O60397 106 aa10.69□□□□□ -0.7
VRK3-206ENST00000594090 MPDU1O75352 247 aa10.69□□□□□ -0.7
VRK3-206ENST00000594090 RPL7P18124 248 aaKnown RBP10.69□□□□□ -0.7
VRK3-206ENST00000594090 ID1P41134 155 aa10.69□□□□□ -0.7
VRK3-206ENST00000594090 MEOX2P50222 304 aa10.69□□□□□ -0.7
VRK3-206ENST00000594090 SAMD13Q5VXD3 122 aa10.69□□□□□ -0.7
VRK3-206ENST00000594090 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.69□□□□□ -0.7
VRK3-206ENST00000594090 CHAC2Q8WUX2 184 aa10.69□□□□□ -0.7
VRK3-206ENST00000594090 RNF183Q96D59 192 aa10.69□□□□□ -0.7
VRK3-206ENST00000594090 C17orf77Q96MU5 243 aa10.69□□□□□ -0.7
VRK3-206ENST00000594090 RSG1Q9BU20 258 aa10.69□□□□□ -0.7
VRK3-206ENST00000594090 ELOA3CA0A087WX78 387 aaPredicted RBP10.68□□□□□ -0.7
VRK3-206ENST00000594090 ISLRO14498 428 aa10.68□□□□□ -0.7
VRK3-206ENST00000594090 CA1P00915 261 aaPredicted RBP10.68□□□□□ -0.7
VRK3-206ENST00000594090 RPL29P47914 159 aaKnown RBP10.68□□□□□ -0.7
VRK3-206ENST00000594090 CLINT1Q14677 625 aa10.68□□□□□ -0.7
VRK3-206ENST00000594090 OXA1LQ15070 435 aa10.68□□□□□ -0.7
VRK3-206ENST00000594090 Q6ZRG5 221 aa10.68□□□□□ -0.7
VRK3-206ENST00000594090 LINC00305Q7Z4B0 112 aa10.68□□□□□ -0.7
VRK3-206ENST00000594090 TMEM37Q8WXS4 190 aa10.68□□□□□ -0.7
VRK3-206ENST00000594090 LINC00052Q96N35 136 aa10.68□□□□□ -0.7
VRK3-206ENST00000594090 RNF24Q9Y225 148 aa10.68□□□□□ -0.7
VRK3-206ENST00000594090 HSPB11Q9Y547 144 aa10.68□□□□□ -0.7
VRK3-206ENST00000594090 PXMP4Q9Y6I8 212 aa10.68□□□□□ -0.7
VRK3-206ENST00000594090 SPP1P10451 314 aa10.67□□□□□ -0.7
VRK3-206ENST00000594090 LYL1P12980 280 aa10.67□□□□□ -0.7
VRK3-206ENST00000594090 ATF4P18848 351 aaPredicted RBP10.67□□□□□ -0.7
VRK3-206ENST00000594090 RPL12P30050 165 aaKnown RBP10.67□□□□□ -0.7
VRK3-206ENST00000594090 B2MP61769 119 aa10.67□□□□□ -0.7
VRK3-206ENST00000594090 C10orf113Q5VZT2 155 aa10.67□□□□□ -0.7
VRK3-206ENST00000594090 OR1L4Q8NGR5 311 aa10.67□□□□□ -0.7
VRK3-206ENST00000594090 MUC7Q8TAX7 377 aa10.67□□□□□ -0.7
VRK3-206ENST00000594090 THAP6Q8TBB0 222 aa10.67□□□□□ -0.7
VRK3-206ENST00000594090 C16orf92Q96LL3 132 aa10.67□□□□□ -0.7
VRK3-206ENST00000594090 NPCDR1Q9BY65 106 aa10.67□□□□□ -0.7
VRK3-206ENST00000594090 SLC39A9Q9NUM3 307 aa10.67□□□□□ -0.7
VRK3-206ENST00000594090 MRPS12O15235 138 aaKnown RBP10.67□□□□□ -0.7
VRK3-206ENST00000594090 HLA-DRB4P13762 266 aa10.67□□□□□ -0.7
VRK3-206ENST00000594090 MORN5Q5VZ52 161 aa10.67□□□□□ -0.7
VRK3-206ENST00000594090 MORN3Q6PF18 240 aaPredicted RBP10.67□□□□□ -0.7
VRK3-206ENST00000594090 PFDN5Q99471 154 aa10.67□□□□□ -0.7
VRK3-206ENST00000594090 DNAJC4Q9NNZ3 241 aa10.67□□□□□ -0.7
VRK3-206ENST00000594090 HLA-DRB4X5D2U9 266 aa10.67□□□□□ -0.7
VRK3-206ENST00000594090 AGRNO00468 2067 aa10.66□□□□□ -0.7
VRK3-206ENST00000594090 A0A087X0K7 114 aa10.66□□□□□ -0.7
VRK3-206ENST00000594090 H3BMM0 161 aa10.66□□□□□ -0.7
VRK3-206ENST00000594090 C4BPBP20851 252 aa10.66□□□□□ -0.7
VRK3-206ENST00000594090 DEFB1P60022 68 aa10.66□□□□□ -0.7
VRK3-206ENST00000594090 FGL1Q08830 312 aa10.66□□□□□ -0.7
VRK3-206ENST00000594090 GDF5OSQ5U4N7 250 aa10.66□□□□□ -0.7
VRK3-206ENST00000594090 FOXI2Q6ZQN5 318 aa10.66□□□□□ -0.7
VRK3-206ENST00000594090 GATAD1Q8WUU5 269 aa10.66□□□□□ -0.7
VRK3-206ENST00000594090 C20orf173Q96LM9 149 aa10.66□□□□□ -0.7
VRK3-206ENST00000594090 ATP5SQ99766 215 aa10.66□□□□□ -0.7
VRK3-206ENST00000594090 WDR61Q9GZS3 305 aaKnown RBP10.66□□□□□ -0.7
VRK3-206ENST00000594090 SAV1Q9H4B6 383 aaPredicted RBP10.66□□□□□ -0.7
VRK3-206ENST00000594090 STAB2Q8WWQ8 2551 aa10.65□□□□□ -0.7
VRK3-206ENST00000594090 C3orf84H3BNL1 204 aa10.65□□□□□ -0.7
VRK3-206ENST00000594090 GIG44P09565 113 aaPredicted RBP10.65□□□□□ -0.7
VRK3-206ENST00000594090 GIPP09681 153 aaPredicted RBP10.65□□□□□ -0.7
VRK3-206ENST00000594090 ASB13Q8WXK3 278 aa10.65□□□□□ -0.7
VRK3-206ENST00000594090 RPRMQ9NS64 109 aa10.65□□□□□ -0.7
VRK3-206ENST00000594090 TRAV8-2A0A0B4J237 113 aa10.64□□□□□ -0.71
VRK3-206ENST00000594090 TMEM41BQ5BJD5 291 aa10.64□□□□□ -0.71
VRK3-206ENST00000594090 IGFL4Q6B9Z1 124 aa10.64□□□□□ -0.71
VRK3-206ENST00000594090 BPIFA4PQ86YQ2 179 aa10.64□□□□□ -0.71
VRK3-206ENST00000594090 SMIM3Q9BZL3 60 aa10.64□□□□□ -0.71
VRK3-206ENST00000594090 KCNIP2Q9NS61 270 aa10.64□□□□□ -0.71
VRK3-206ENST00000594090 NBEAL2Q6ZNJ1 2754 aa10.64□□□□□ -0.71
VRK3-206ENST00000594090 F6UB75 175 aa10.63□□□□□ -0.71
VRK3-206ENST00000594090 RNF182Q8N6D2 247 aa10.63□□□□□ -0.71
VRK3-206ENST00000594090 TRAV5A0A0B4J249 113 aa10.62□□□□□ -0.71
VRK3-206ENST00000594090 A0A0J9YWU9 116 aa10.62□□□□□ -0.71
VRK3-206ENST00000594090 A0A0J9YX75 114 aa10.62□□□□□ -0.71
VRK3-206ENST00000594090 IGKV3-20P01619 116 aa10.62□□□□□ -0.71
VRK3-206ENST00000594090 IGLC2P0DOY2 106 aa10.62□□□□□ -0.71
VRK3-206ENST00000594090 CXCL2P19875 107 aa10.62□□□□□ -0.71
VRK3-206ENST00000594090 NUTF2P61970 127 aaKnown RBP10.62□□□□□ -0.71
VRK3-206ENST00000594090 GCSAMLQ5JQS6 135 aa10.62□□□□□ -0.71
VRK3-206ENST00000594090 SPATA31B1PQ5VZV4 182 aa10.62□□□□□ -0.71
VRK3-206ENST00000594090 LCN15Q6UWW0 184 aa10.62□□□□□ -0.71
VRK3-206ENST00000594090 ZNF709Q8N972 641 aa10.62□□□□□ -0.71
VRK3-206ENST00000594090 OR11H2Q8NH07 326 aa10.62□□□□□ -0.71
VRK3-206ENST00000594090 CLUHP3Q96NS8 147 aa10.62□□□□□ -0.71
VRK3-206ENST00000594090 RARRES2Q99969 163 aa10.62□□□□□ -0.71
VRK3-206ENST00000594090 C17orf112F2Z3M2 114 aa10.61□□□□□ -0.71
VRK3-206ENST00000594090 IFNA5P01569 189 aa10.61□□□□□ -0.71
VRK3-206ENST00000594090 Q5BKY6 102 aa10.61□□□□□ -0.71
VRK3-206ENST00000594090 FAM78BQ5VT40 261 aa10.61□□□□□ -0.71
VRK3-206ENST00000594090 EBLN2Q6P2I7 272 aa10.61□□□□□ -0.71
VRK3-206ENST00000594090 OR4B1Q8NGF8 309 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms