RNA–Protein interactions for RNA: ENST00000584760.1

SREBF1-223, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-223	ENST00000584760	RPP25L	Q8N5L8	163 aa	Known RBP	9.66	□□□□□ -0.86
SREBF1-223	ENST00000584760	LINC00052	Q96N35	136 aa		9.66	□□□□□ -0.86
SREBF1-223	ENST00000584760	UHRF2	Q96PU4	802 aa		9.66	□□□□□ -0.86
SREBF1-223	ENST00000584760	MGST2	Q99735	147 aa		9.66	□□□□□ -0.86
SREBF1-223	ENST00000584760	LYRM2	Q9NU23	88 aa	Predicted RBP	9.66	□□□□□ -0.86
SREBF1-223	ENST00000584760	CLEC5A	Q9NY25	188 aa		9.66	□□□□□ -0.86
SREBF1-223	ENST00000584760	HIGD1A	Q9Y241	93 aa		9.66	□□□□□ -0.86
SREBF1-223	ENST00000584760	HERC2	O95714	4834 aa		9.65	□□□□□ -0.86
SREBF1-223	ENST00000584760	IGSF23	A1L1A6	192 aa		9.65	□□□□□ -0.86
SREBF1-223	ENST00000584760	NUPR2	A6NF83	97 aa		9.65	□□□□□ -0.86
SREBF1-223	ENST00000584760	FAM24A	A6NFZ4	105 aa		9.65	□□□□□ -0.86
SREBF1-223	ENST00000584760	AGPAT2	O15120	278 aa		9.65	□□□□□ -0.86
SREBF1-223	ENST00000584760	CST7	O76096	145 aa		9.65	□□□□□ -0.86
SREBF1-223	ENST00000584760	PVALB	P20472	110 aa	Predicted RBP	9.65	□□□□□ -0.86
SREBF1-223	ENST00000584760	BCAP31	P51572	246 aa		9.65	□□□□□ -0.86
SREBF1-223	ENST00000584760	VWC2	Q2TAL6	325 aa		9.65	□□□□□ -0.86
SREBF1-223	ENST00000584760	PATE2	Q6UY27	113 aa		9.65	□□□□□ -0.86
SREBF1-223	ENST00000584760	C20orf173	Q96LM9	149 aa		9.65	□□□□□ -0.86
SREBF1-223	ENST00000584760	CLUHP3	Q96NS8	147 aa		9.65	□□□□□ -0.86
SREBF1-223	ENST00000584760	MARVELD1	Q9BSK0	173 aa		9.65	□□□□□ -0.86
SREBF1-223	ENST00000584760	RSG1	Q9BU20	258 aa		9.65	□□□□□ -0.86
SREBF1-223	ENST00000584760	ARL6	Q9H0F7	186 aa		9.65	□□□□□ -0.86
SREBF1-223	ENST00000584760	GPN1	Q9HCN4	374 aa	Predicted RBP	9.65	□□□□□ -0.86
SREBF1-223	ENST00000584760		X6R8D5	127 aa		9.65	□□□□□ -0.86
SREBF1-223	ENST00000584760	INMT-MINDY4	F8WBC2	141 aa		9.64	□□□□□ -0.87
SREBF1-223	ENST00000584760	DEFB4A	O15263	64 aa		9.64	□□□□□ -0.87
SREBF1-223	ENST00000584760	PRAF2	O60831	178 aa		9.64	□□□□□ -0.87
SREBF1-223	ENST00000584760	OR5G3	P0C626	314 aa		9.64	□□□□□ -0.87
SREBF1-223	ENST00000584760	MIF	P14174	115 aa		9.64	□□□□□ -0.87
SREBF1-223	ENST00000584760	RPL7	P18124	248 aa	Known RBP	9.64	□□□□□ -0.87
SREBF1-223	ENST00000584760	NUTF2	P61970	127 aa	Known RBP	9.64	□□□□□ -0.87
SREBF1-223	ENST00000584760	PXDC1	Q5TGL8	231 aa		9.64	□□□□□ -0.87
SREBF1-223	ENST00000584760	TMEM252	Q8N6L7	170 aa		9.64	□□□□□ -0.87
SREBF1-223	ENST00000584760	ZNF709	Q8N972	641 aa		9.64	□□□□□ -0.87
SREBF1-223	ENST00000584760	C16orf92	Q96LL3	132 aa		9.64	□□□□□ -0.87
SREBF1-223	ENST00000584760	C1QTNF4	Q9BXJ3	329 aa		9.64	□□□□□ -0.87
SREBF1-223	ENST00000584760	WDR83OS	Q9Y284	106 aa		9.64	□□□□□ -0.87
SREBF1-223	ENST00000584760		A0A087X0K7	114 aa		9.63	□□□□□ -0.87
SREBF1-223	ENST00000584760	TRAV8-2	A0A0B4J237	113 aa		9.63	□□□□□ -0.87
SREBF1-223	ENST00000584760	IGHV4-28	A0A0C4DH34	117 aa		9.63	□□□□□ -0.87
SREBF1-223	ENST00000584760		A0A0J9YX75	114 aa		9.63	□□□□□ -0.87
SREBF1-223	ENST00000584760		F6UB75	175 aa		9.63	□□□□□ -0.87
SREBF1-223	ENST00000584760	GOSR2	O14653	212 aa		9.63	□□□□□ -0.87
SREBF1-223	ENST00000584760	RBMY1A1	P0DJD3	496 aa	Known RBP	9.63	□□□□□ -0.87
SREBF1-223	ENST00000584760	RBMY1C	P0DJD4	496 aa		9.63	□□□□□ -0.87
SREBF1-223	ENST00000584760	SULT1A1	P50225	295 aa		9.63	□□□□□ -0.87
SREBF1-223	ENST00000584760	RBMY1F	Q15415	496 aa	Known RBP	9.63	□□□□□ -0.87
SREBF1-223	ENST00000584760	SPATA31B1P	Q5VZV4	182 aa		9.63	□□□□□ -0.87
SREBF1-223	ENST00000584760	CEMP1	Q6PRD7	247 aa	Predicted RBP	9.63	□□□□□ -0.87
SREBF1-223	ENST00000584760	ARV1	Q9H2C2	271 aa		9.63	□□□□□ -0.87
SREBF1-223	ENST00000584760	RPRM	Q9NS64	109 aa		9.63	□□□□□ -0.87
SREBF1-223	ENST00000584760	UQCC1	Q9NVA1	299 aa		9.63	□□□□□ -0.87
SREBF1-223	ENST00000584760	XCL2	Q9UBD3	114 aa		9.63	□□□□□ -0.87
SREBF1-223	ENST00000584760	UBE2L5P	A0A1B0GUS4	154 aa		9.62	□□□□□ -0.87
SREBF1-223	ENST00000584760		A8MTW9	85 aa		9.62	□□□□□ -0.87
SREBF1-223	ENST00000584760	MRPS12	O15235	138 aa	Known RBP	9.62	□□□□□ -0.87
SREBF1-223	ENST00000584760	SIX6	O95475	246 aa		9.62	□□□□□ -0.87
SREBF1-223	ENST00000584760	IGKV3-20	P01619	116 aa		9.62	□□□□□ -0.87
SREBF1-223	ENST00000584760	DEFA1	P59665	94 aa		9.62	□□□□□ -0.87
SREBF1-223	ENST00000584760	DEFA3	P59666	94 aa		9.62	□□□□□ -0.87
SREBF1-223	ENST00000584760	NANOS2	P60321	138 aa	Known RBP	9.62	□□□□□ -0.87
SREBF1-223	ENST00000584760	STX12	Q86Y82	276 aa		9.62	□□□□□ -0.87
SREBF1-223	ENST00000584760	C11orf45	Q8TAV5	145 aa		9.62	□□□□□ -0.87
SREBF1-223	ENST00000584760	PHLDA1	Q8WV24	401 aa	Predicted RBP	9.62	□□□□□ -0.87
SREBF1-223	ENST00000584760	NMES1	Q9C002	83 aa		9.62	□□□□□ -0.87
SREBF1-223	ENST00000584760	CAMLG	P49069	296 aa		9.61	□□□□□ -0.87
SREBF1-223	ENST00000584760	H2BFS	P57053	126 aa		9.61	□□□□□ -0.87
SREBF1-223	ENST00000584760	HBG1	P69891	147 aa		9.61	□□□□□ -0.87
SREBF1-223	ENST00000584760	HBG2	P69892	147 aa		9.61	□□□□□ -0.87
SREBF1-223	ENST00000584760	PRR20E	P86478	221 aa		9.61	□□□□□ -0.87
SREBF1-223	ENST00000584760	PRR20C	P86479	221 aa		9.61	□□□□□ -0.87
SREBF1-223	ENST00000584760	PRR20D	P86480	221 aa		9.61	□□□□□ -0.87
SREBF1-223	ENST00000584760	PRR20B	P86481	221 aa		9.61	□□□□□ -0.87
SREBF1-223	ENST00000584760	PRR20A	P86496	221 aa		9.61	□□□□□ -0.87
SREBF1-223	ENST00000584760	FAM78B	Q5VT40	261 aa		9.61	□□□□□ -0.87
SREBF1-223	ENST00000584760	MORN5	Q5VZ52	161 aa		9.61	□□□□□ -0.87
SREBF1-223	ENST00000584760	IGFL4	Q6B9Z1	124 aa		9.61	□□□□□ -0.87
SREBF1-223	ENST00000584760	EBLN2	Q6P2I7	272 aa		9.61	□□□□□ -0.87
SREBF1-223	ENST00000584760	ZNF705A	Q6ZN79	300 aa	Predicted RBP	9.61	□□□□□ -0.87
SREBF1-223	ENST00000584760	LINC00305	Q7Z4B0	112 aa		9.61	□□□□□ -0.87
SREBF1-223	ENST00000584760	S100A7A	Q86SG5	101 aa		9.61	□□□□□ -0.87
SREBF1-223	ENST00000584760	OR4B1	Q8NGF8	309 aa		9.61	□□□□□ -0.87
SREBF1-223	ENST00000584760	TMEM37	Q8WXS4	190 aa		9.61	□□□□□ -0.87
SREBF1-223	ENST00000584760	MFF	Q9GZY8	342 aa		9.61	□□□□□ -0.87
SREBF1-223	ENST00000584760	SLC35B3	Q9H1N7	401 aa		9.61	□□□□□ -0.87
SREBF1-223	ENST00000584760	HRH4	Q9H3N8	390 aa		9.61	□□□□□ -0.87
SREBF1-223	ENST00000584760	ELOA3C	A0A087WX78	387 aa	Predicted RBP	9.6	□□□□□ -0.87
SREBF1-223	ENST00000584760	ZNF705F	A8MVS1	300 aa	Predicted RBP	9.6	□□□□□ -0.87
SREBF1-223	ENST00000584760	COX7A2P2	O60397	106 aa		9.6	□□□□□ -0.87
SREBF1-223	ENST00000584760	ZNF705D	P0CH99	300 aa	Predicted RBP	9.6	□□□□□ -0.87
SREBF1-223	ENST00000584760	ZNF705B	P0CI00	300 aa	Predicted RBP	9.6	□□□□□ -0.87
SREBF1-223	ENST00000584760	S100A11	P31949	105 aa		9.6	□□□□□ -0.87
SREBF1-223	ENST00000584760	FXYD7	P58549	80 aa		9.6	□□□□□ -0.87
SREBF1-223	ENST00000584760	FGL1	Q08830	312 aa		9.6	□□□□□ -0.87
SREBF1-223	ENST00000584760	RAB31	Q13636	194 aa		9.6	□□□□□ -0.87
SREBF1-223	ENST00000584760	OPCML	Q14982	345 aa		9.6	□□□□□ -0.87
SREBF1-223	ENST00000584760	MIC13	Q5XKP0	118 aa		9.6	□□□□□ -0.87
SREBF1-223	ENST00000584760	AMTN	Q6UX39	209 aa		9.6	□□□□□ -0.87
SREBF1-223	ENST00000584760	RNF182	Q8N6D2	247 aa		9.6	□□□□□ -0.87
SREBF1-223	ENST00000584760	OR5AC2	Q9NZP5	309 aa		9.6	□□□□□ -0.87

Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms