RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 BMPR1BO00238 502 aa8.11□□□□□ -1.11
SS18-217ENST00000580958 ZNF207O43670 478 aaKnown RBP8.11□□□□□ -1.11
SS18-217ENST00000580958 NBEAP1P0C6P0 100 aa8.11□□□□□ -1.11
SS18-217ENST00000580958 HIST1H1EP10412 219 aaKnown RBP8.11□□□□□ -1.11
SS18-217ENST00000580958 CRYBB3P26998 211 aa8.11□□□□□ -1.11
SS18-217ENST00000580958 PSMB8P28062 276 aa8.11□□□□□ -1.11
SS18-217ENST00000580958 AKR1C3P42330 323 aa8.11□□□□□ -1.11
SS18-217ENST00000580958 SUMO1P63165 101 aaKnown RBP8.11□□□□□ -1.11
SS18-217ENST00000580958 SLC35B1P78383 322 aa8.11□□□□□ -1.11
SS18-217ENST00000580958 SCGB2A2Q13296 93 aa8.11□□□□□ -1.11
SS18-217ENST00000580958 OXLD1Q5BKU9 147 aa8.11□□□□□ -1.11
SS18-217ENST00000580958 ZNF343Q6P1L6 599 aa8.11□□□□□ -1.11
SS18-217ENST00000580958 BPIFA4PQ86YQ2 179 aa8.11□□□□□ -1.11
SS18-217ENST00000580958 Q8N2B8 174 aa8.11□□□□□ -1.11
SS18-217ENST00000580958 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.11□□□□□ -1.11
SS18-217ENST00000580958 DERL1Q9BUN8 251 aa8.11□□□□□ -1.11
SS18-217ENST00000580958 ELOVL1Q9BW60 279 aa8.11□□□□□ -1.11
SS18-217ENST00000580958 SDF2L1Q9HCN8 221 aa8.11□□□□□ -1.11
SS18-217ENST00000580958 RPS10P5Q9NQ39 176 aa8.11□□□□□ -1.11
SS18-217ENST00000580958 ZNF586Q9NXT0 402 aa8.11□□□□□ -1.11
SS18-217ENST00000580958 HIVEP2P31629 2446 aa8.11□□□□□ -1.11
SS18-217ENST00000580958 CLPSL1A2RUU4 121 aa8.1□□□□□ -1.11
SS18-217ENST00000580958 MRPS12O15235 138 aaKnown RBP8.1□□□□□ -1.11
SS18-217ENST00000580958 RPLP1P05386 114 aaKnown RBP8.1□□□□□ -1.11
SS18-217ENST00000580958 SRD5A1P18405 259 aa8.1□□□□□ -1.11
SS18-217ENST00000580958 RPL15P61313 204 aaKnown RBP8.1□□□□□ -1.11
SS18-217ENST00000580958 RANP62826 216 aaKnown RBP8.1□□□□□ -1.11
SS18-217ENST00000580958 FOXE3Q13461 319 aa8.1□□□□□ -1.11
SS18-217ENST00000580958 RHEBQ15382 184 aa8.1□□□□□ -1.11
SS18-217ENST00000580958 ADIRFQ15847 76 aa8.1□□□□□ -1.11
SS18-217ENST00000580958 TMEM241Q24JQ0 296 aa8.1□□□□□ -1.11
SS18-217ENST00000580958 TEX38Q6PEX7 206 aa8.1□□□□□ -1.11
SS18-217ENST00000580958 TMEM88Q6PEY1 159 aa8.1□□□□□ -1.11
SS18-217ENST00000580958 Q6ZSV7 163 aa8.1□□□□□ -1.11
SS18-217ENST00000580958 CBLN2Q8IUK8 224 aa8.1□□□□□ -1.11
SS18-217ENST00000580958 OR4F17Q8NGA8 305 aa8.1□□□□□ -1.11
SS18-217ENST00000580958 OR5B12Q96R08 314 aa8.1□□□□□ -1.11
SS18-217ENST00000580958 SERTAD4Q9NUC0 356 aa8.1□□□□□ -1.11
SS18-217ENST00000580958 PGPA6NDG6 321 aa8.09□□□□□ -1.11
SS18-217ENST00000580958 SLC25A5P05141 298 aaKnown RBP8.09□□□□□ -1.11
SS18-217ENST00000580958 ELANEP08246 267 aa8.09□□□□□ -1.11
SS18-217ENST00000580958 IGLC2P0DOY2 106 aa8.09□□□□□ -1.11
SS18-217ENST00000580958 S100A7P31151 101 aa8.09□□□□□ -1.11
SS18-217ENST00000580958 MYCNOSP40205 109 aa8.09□□□□□ -1.11
SS18-217ENST00000580958 RPL23P62829 140 aaKnown RBP8.09□□□□□ -1.11
SS18-217ENST00000580958 PNRC1Q12796 327 aaPredicted RBP8.09□□□□□ -1.11
SS18-217ENST00000580958 C17orf77Q96MU5 243 aa8.09□□□□□ -1.11
SS18-217ENST00000580958 METTL26Q96S19 204 aa8.09□□□□□ -1.11
SS18-217ENST00000580958 Q9H3A6 140 aa8.09□□□□□ -1.11
SS18-217ENST00000580958 PEF1Q9UBV8 284 aaKnown RBP8.09□□□□□ -1.11
SS18-217ENST00000580958 OTOGQ6ZRI0 2925 aa8.08□□□□□ -1.12
SS18-217ENST00000580958 TRBV19A0A075B6N1 114 aa8.08□□□□□ -1.12
SS18-217ENST00000580958 IGHV3OR16-13A0A075B7E8 117 aa8.08□□□□□ -1.12
SS18-217ENST00000580958 IGHV3-49A0A0A0MS15 119 aa8.08□□□□□ -1.12
SS18-217ENST00000580958 IGHV3-74A0A0B4J1X5 117 aa8.08□□□□□ -1.12
SS18-217ENST00000580958 PGPEP1LA6NFU8 196 aa8.08□□□□□ -1.12
SS18-217ENST00000580958 CLDN34H7C241 214 aa8.08□□□□□ -1.12
SS18-217ENST00000580958 NDUFA4O00483 81 aa8.08□□□□□ -1.12
SS18-217ENST00000580958 PEX7O00628 323 aa8.08□□□□□ -1.12
SS18-217ENST00000580958 GGCTO75223 188 aaKnown RBP8.08□□□□□ -1.12
SS18-217ENST00000580958 RPL7P18124 248 aaKnown RBP8.08□□□□□ -1.12
SS18-217ENST00000580958 RPL35P42766 123 aaKnown RBP8.08□□□□□ -1.12
SS18-217ENST00000580958 GNG5P63218 68 aa8.08□□□□□ -1.12
SS18-217ENST00000580958 Q71RC1 249 aaPredicted RBP8.08□□□□□ -1.12
SS18-217ENST00000580958 OR8I2Q8N0Y5 310 aa8.08□□□□□ -1.12
SS18-217ENST00000580958 MYOZ3Q8TDC0 251 aa8.08□□□□□ -1.12
SS18-217ENST00000580958 C2CD4CQ8TF44 421 aa8.08□□□□□ -1.12
SS18-217ENST00000580958 ZNF418Q8TF45 676 aaPredicted RBP8.08□□□□□ -1.12
SS18-217ENST00000580958 OTORQ9NRC9 128 aa8.08□□□□□ -1.12
SS18-217ENST00000580958 RNF24Q9Y225 148 aa8.08□□□□□ -1.12
SS18-217ENST00000580958 IGHV3-66A0A0C4DH42 116 aa8.07□□□□□ -1.12
SS18-217ENST00000580958 HELTA6NFD8 242 aa8.07□□□□□ -1.12
SS18-217ENST00000580958 SLC17A3O00476 420 aa8.07□□□□□ -1.12
SS18-217ENST00000580958 APOHP02749 345 aaPredicted RBP8.07□□□□□ -1.12
SS18-217ENST00000580958 RNASE1P07998 156 aaKnown RBP8.07□□□□□ -1.12
SS18-217ENST00000580958 CD99P14209 185 aa8.07□□□□□ -1.12
SS18-217ENST00000580958 ATF4P18848 351 aaPredicted RBP8.07□□□□□ -1.12
SS18-217ENST00000580958 FAM209BQ5JX69 171 aa8.07□□□□□ -1.12
SS18-217ENST00000580958 UNQ9165/PRO28630Q6UXU0 137 aa8.07□□□□□ -1.12
SS18-217ENST00000580958 EXOC3-AS1Q8N2X6 119 aa8.07□□□□□ -1.12
SS18-217ENST00000580958 RNF152Q8N8N0 203 aa8.07□□□□□ -1.12
SS18-217ENST00000580958 SMCO4Q9NRQ5 59 aa8.07□□□□□ -1.12
SS18-217ENST00000580958 AURKAIP1Q9NWT8 199 aaPredicted RBP8.07□□□□□ -1.12
SS18-217ENST00000580958 CDC42EP3Q9UKI2 254 aa8.07□□□□□ -1.12
SS18-217ENST00000580958 EPDR1Q9UM22 224 aa8.07□□□□□ -1.12
SS18-217ENST00000580958 RPH3ALQ9UNE2 315 aa8.07□□□□□ -1.12
SS18-217ENST00000580958 SMAD5-AS1Q9Y6J3 95 aa8.07□□□□□ -1.12
SS18-217ENST00000580958 U3KQE9 123 aa8.07□□□□□ -1.12
SS18-217ENST00000580958 TRBV20OR9-2A0A075B6H5 130 aa8.06□□□□□ -1.12
SS18-217ENST00000580958 B4DEV8 164 aa8.06□□□□□ -1.12
SS18-217ENST00000580958 C9JCJ5 164 aa8.06□□□□□ -1.12
SS18-217ENST00000580958 BUB3O43684 328 aa8.06□□□□□ -1.12
SS18-217ENST00000580958 LGALS1P09382 135 aaKnown RBP8.06□□□□□ -1.12
SS18-217ENST00000580958 CNN1P51911 297 aaKnown RBP8.06□□□□□ -1.12
SS18-217ENST00000580958 RNF212Q495C1 297 aa8.06□□□□□ -1.12
SS18-217ENST00000580958 CENPWQ5EE01 88 aa8.06□□□□□ -1.12
SS18-217ENST00000580958 SIGLEC15Q6ZMC9 328 aa8.06□□□□□ -1.12
SS18-217ENST00000580958 KLHDC1Q8N7A1 406 aa8.06□□□□□ -1.12
SS18-217ENST00000580958 C5orf17Q8NAS9 161 aa8.06□□□□□ -1.12
SS18-217ENST00000580958 TMEM190Q8WZ59 177 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms