RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 CUBNO60494 3623 aa11.67□□□□□ -0.54
SS18-215ENST00000580642 IGHV7-4-1A0A0J9YVY3 117 aa11.67□□□□□ -0.54
SS18-215ENST00000580642 GP9P14770 177 aa11.67□□□□□ -0.54
SS18-215ENST00000580642 MORN5Q5VZ52 161 aa11.67□□□□□ -0.54
SS18-215ENST00000580642 C8orf86Q6ZUL3 223 aa11.67□□□□□ -0.54
SS18-215ENST00000580642 OR8I2Q8N0Y5 310 aa11.67□□□□□ -0.54
SS18-215ENST00000580642 PCNPQ8WW12 178 aaKnown RBP11.67□□□□□ -0.54
SS18-215ENST00000580642 TMEM158Q8WZ71 300 aa11.67□□□□□ -0.54
SS18-215ENST00000580642 CITED1Q99966 193 aa11.67□□□□□ -0.54
SS18-215ENST00000580642 SMPXQ9UHP9 88 aa11.67□□□□□ -0.54
SS18-215ENST00000580642 NIPBLQ6KC79 2804 aaeCLIP11.67□□□□□ -0.54
SS18-215ENST00000580642 TRAV5A0A0B4J249 113 aa11.66□□□□□ -0.54
SS18-215ENST00000580642 A0A1W2PRE2 83 aa11.66□□□□□ -0.54
SS18-215ENST00000580642 HELTA6NFD8 242 aa11.66□□□□□ -0.54
SS18-215ENST00000580642 ADARB2-AS1A8MUL3 147 aa11.66□□□□□ -0.54
SS18-215ENST00000580642 HMGB3O15347 200 aaKnown RBP11.66□□□□□ -0.54
SS18-215ENST00000580642 ZNF253O75346 499 aa11.66□□□□□ -0.54
SS18-215ENST00000580642 GALR1P47211 349 aa11.66□□□□□ -0.54
SS18-215ENST00000580642 FGF8P55075 233 aaPredicted RBP11.66□□□□□ -0.54
SS18-215ENST00000580642 UBE2L3P68036 154 aaKnown RBP11.66□□□□□ -0.54
SS18-215ENST00000580642 CCL20P78556 96 aa11.66□□□□□ -0.54
SS18-215ENST00000580642 PDE6HQ13956 83 aa11.66□□□□□ -0.54
SS18-215ENST00000580642 PEA15Q15121 130 aa11.66□□□□□ -0.54
SS18-215ENST00000580642 KRTAP24-1Q3LI83 254 aa11.66□□□□□ -0.54
SS18-215ENST00000580642 SAMD13Q5VXD3 122 aa11.66□□□□□ -0.54
SS18-215ENST00000580642 C16orf54Q6UWD8 224 aa11.66□□□□□ -0.54
SS18-215ENST00000580642 PRIMA1Q86XR5 153 aa11.66□□□□□ -0.54
SS18-215ENST00000580642 FXYD5Q96DB9 178 aa11.66□□□□□ -0.54
SS18-215ENST00000580642 ZNF503Q96F45 646 aa11.66□□□□□ -0.54
SS18-215ENST00000580642 RAX2Q96IS3 184 aa11.66□□□□□ -0.54
SS18-215ENST00000580642 TCEAL7Q9BRU2 100 aa11.66□□□□□ -0.54
SS18-215ENST00000580642 SIGLEC8Q9NYZ4 499 aa11.66□□□□□ -0.54
SS18-215ENST00000580642 VAX2Q9UIW0 290 aa11.66□□□□□ -0.54
SS18-215ENST00000580642 JMJD1CQ15652 2540 aa11.66□□□□□ -0.54
SS18-215ENST00000580642 A0A087X0K7 114 aa11.65□□□□□ -0.54
SS18-215ENST00000580642 RBFOX3A6NFN3 312 aa11.65□□□□□ -0.54
SS18-215ENST00000580642 M0QZ24 198 aa11.65□□□□□ -0.54
SS18-215ENST00000580642 MRPS12O15235 138 aaKnown RBP11.65□□□□□ -0.54
SS18-215ENST00000580642 NBEAP1P0C6P0 100 aa11.65□□□□□ -0.54
SS18-215ENST00000580642 BCL2P10415 239 aa11.65□□□□□ -0.54
SS18-215ENST00000580642 SYNJ2BPP57105 145 aa11.65□□□□□ -0.54
SS18-215ENST00000580642 KRTAP10-3P60369 221 aa11.65□□□□□ -0.54
SS18-215ENST00000580642 ZNF506Q5JVG8 444 aa11.65□□□□□ -0.54
SS18-215ENST00000580642 C18orf65Q6ZTR6 163 aa11.65□□□□□ -0.54
SS18-215ENST00000580642 COMMD7Q86VX2 200 aa11.65□□□□□ -0.54
SS18-215ENST00000580642 LYPD1Q8N2G4 141 aa11.65□□□□□ -0.54
SS18-215ENST00000580642 C11orf44Q8N8P7 122 aa11.65□□□□□ -0.54
SS18-215ENST00000580642 OR9G4Q8NGQ1 327 aa11.65□□□□□ -0.54
SS18-215ENST00000580642 CLEC5AQ9NY25 188 aa11.65□□□□□ -0.54
SS18-215ENST00000580642 GNG13Q9P2W3 67 aa11.65□□□□□ -0.54
SS18-215ENST00000580642 TEP1Q99973 2627 aaKnown RBP11.64□□□□□ -0.55
SS18-215ENST00000580642 TMEM213A2RRL7 107 aa11.64□□□□□ -0.55
SS18-215ENST00000580642 IGLC2P0DOY2 106 aa11.64□□□□□ -0.55
SS18-215ENST00000580642 IQCF2Q8IXL9 164 aa11.64□□□□□ -0.55
SS18-215ENST00000580642 ARL6IP6Q8N6S5 226 aa11.64□□□□□ -0.55
SS18-215ENST00000580642 GLMPQ8WWB7 406 aa11.64□□□□□ -0.55
SS18-215ENST00000580642 ZNF747Q9BV97 191 aa11.64□□□□□ -0.55
SS18-215ENST00000580642 LOC102723971A0A1B0GUV8 181 aa11.63□□□□□ -0.55
SS18-215ENST00000580642 CHEK1O14757 476 aa11.63□□□□□ -0.55
SS18-215ENST00000580642 DEFB136Q30KP8 78 aa11.63□□□□□ -0.55
SS18-215ENST00000580642 TM4SF20Q53R12 229 aa11.63□□□□□ -0.55
SS18-215ENST00000580642 LEMD1Q68G75 181 aa11.63□□□□□ -0.55
SS18-215ENST00000580642 RHPN1-AS1Q9BWJ2 59 aa11.63□□□□□ -0.55
SS18-215ENST00000580642 TRBV19A0A075B6N1 114 aa11.62□□□□□ -0.55
SS18-215ENST00000580642 A0A1B0GV50 99 aa11.62□□□□□ -0.55
SS18-215ENST00000580642 A0A1W2PRX2 142 aa11.62□□□□□ -0.55
SS18-215ENST00000580642 C2orf70A6NJV1 201 aa11.62□□□□□ -0.55
SS18-215ENST00000580642 PDE6DO43924 150 aa11.62□□□□□ -0.55
SS18-215ENST00000580642 PYYP10082 97 aa11.62□□□□□ -0.55
SS18-215ENST00000580642 ATF4P18848 351 aaPredicted RBP11.62□□□□□ -0.55
SS18-215ENST00000580642 CBLN1P23435 193 aa11.62□□□□□ -0.55
SS18-215ENST00000580642 SLURP1P55000 103 aa11.62□□□□□ -0.55
SS18-215ENST00000580642 PSG9Q00887 426 aa11.62□□□□□ -0.55
SS18-215ENST00000580642 MEF2BQ02080 365 aaPredicted RBP11.62□□□□□ -0.55
SS18-215ENST00000580642 DLX4Q92988 240 aaPredicted RBP11.62□□□□□ -0.55
SS18-215ENST00000580642 EIF5A2Q9GZV4 153 aaKnown RBP11.62□□□□□ -0.55
SS18-215ENST00000580642 TMPRSS5Q9H3S3 457 aa11.62□□□□□ -0.55
SS18-215ENST00000580642 IGHV3OR16-8A0A075B7F1 116 aa11.61□□□□□ -0.55
SS18-215ENST00000580642 FAM74A7A6NL05 159 aa11.61□□□□□ -0.55
SS18-215ENST00000580642 ZNF207O43670 478 aaKnown RBP11.61□□□□□ -0.55
SS18-215ENST00000580642 PAGE4O60829 102 aa11.61□□□□□ -0.55
SS18-215ENST00000580642 APOHP02749 345 aaPredicted RBP11.61□□□□□ -0.55
SS18-215ENST00000580642 OR10J4P0C629 311 aa11.61□□□□□ -0.55
SS18-215ENST00000580642 SIGLEC15Q6ZMC9 328 aa11.61□□□□□ -0.55
SS18-215ENST00000580642 ZNF785A8K8V0 405 aa11.6□□□□□ -0.55
SS18-215ENST00000580642 F6UZH7 168 aa11.6□□□□□ -0.55
SS18-215ENST00000580642 TMEM250H0YL14 139 aa11.6□□□□□ -0.55
SS18-215ENST00000580642 OVOL1O14753 267 aa11.6□□□□□ -0.55
SS18-215ENST00000580642 EIF3GO75821 320 aaKnown RBP eCLIP11.6□□□□□ -0.55
SS18-215ENST00000580642 FOLR2P14207 255 aa11.6□□□□□ -0.55
SS18-215ENST00000580642 HAGHQ16775 308 aa11.6□□□□□ -0.55
SS18-215ENST00000580642 NSUN5P1Q3KNT7 163 aa11.6□□□□□ -0.55
SS18-215ENST00000580642 TOR2AQ5JU69 321 aa11.6□□□□□ -0.55
SS18-215ENST00000580642 SHISA2Q6UWI4 295 aa11.6□□□□□ -0.55
SS18-215ENST00000580642 SLC50A1Q9BRV3 221 aa11.6□□□□□ -0.55
SS18-215ENST00000580642 OTORQ9NRC9 128 aa11.6□□□□□ -0.55
SS18-215ENST00000580642 ZNF586Q9NXT0 402 aa11.6□□□□□ -0.55
SS18-215ENST00000580642 SETD2Q9BYW2 2564 aaPredicted RBP11.6□□□□□ -0.55
SS18-215ENST00000580642 TRAV2A0A0B4J234 112 aa11.59□□□□□ -0.55
SS18-215ENST00000580642 C11orf94C9JXX5 98 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms