RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 TAF9BQ9HBM6 251 aa5.3□□□□□ -1.56
VPS53-217ENST00000575100 ENY2Q9NPA8 101 aa5.3□□□□□ -1.56
VPS53-217ENST00000575100 KAAG1Q9UBP8 84 aa5.3□□□□□ -1.56
VPS53-217ENST00000575100 TRAPPC2LQ9UL33 140 aa5.3□□□□□ -1.56
VPS53-217ENST00000575100 TNFSF18Q9UNG2 199 aa5.3□□□□□ -1.56
VPS53-217ENST00000575100 MALRD1Q5VYJ5 2156 aa5.3□□□□□ -1.56
VPS53-217ENST00000575100 TRAV30A0A087WSZ9 112 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 LINC01619G3V211 115 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 FSTL3O95633 263 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 CGB3P0DN86 165 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 CGB7P0DN87 165 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 SLC25A16P16260 332 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 CCL3L1P16619 93 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 NFYAP23511 347 aaPredicted RBP5.29□□□□□ -1.56
VPS53-217ENST00000575100 ZBTB25P24278 435 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 RPL29P47914 159 aaKnown RBP5.29□□□□□ -1.56
VPS53-217ENST00000575100 HLA-DRB3P79483 266 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 PRB3Q04118 309 aaPredicted RBP5.29□□□□□ -1.56
VPS53-217ENST00000575100 C17orf58Q2M2W7 97 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 TMEM78Q5T7P6 136 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 Q6ZS49 121 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 MRPL55Q7Z7F7 128 aaKnown RBP5.29□□□□□ -1.56
VPS53-217ENST00000575100 OR1L8Q8NGR8 309 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 TP53RKQ96S44 253 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 TAS2R8Q9NYW2 309 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 CALYQ9NYX4 217 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 HSPB8Q9UJY1 196 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 ANK2Q01484 3957 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 KIAA2026Q5HYC2 2103 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 CUBNO60494 3623 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 A0A087WX48 190 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 IGHV3-43A0A0B4J1X8 118 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 IGKV1D-13A0A0B4J2D9 117 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 A0A1W2PRE2 83 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 NDUFB3O43676 98 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 OR7C2O60412 319 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 NXPH4O95158 308 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 IGHV3-7P01780 117 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 HBZP02008 142 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 OR5H8P0DN80 308 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 OR13C7P0DN81 318 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 IGHV3-43DP0DP04 118 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 IGKV1-13P0DP09 117 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 AZU1P20160 251 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 DEFA1P59665 94 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 DEFA3P59666 94 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 RHOBP62745 196 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 HMGN3Q15651 99 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 TMEM155Q4W5P6 130 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 AKR1C8PQ5T2L2 129 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 OR5H2Q8NGV7 314 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 C10orf105Q8TEF2 133 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 H1FXQ92522 213 aaKnown RBP5.29□□□□□ -1.56
VPS53-217ENST00000575100 C19orf24Q9BVV8 132 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 ZNF286AQ9HBT8 521 aa5.29□□□□□ -1.56
VPS53-217ENST00000575100 IGHV3OR16-12A0A075B7B8 117 aa5.28□□□□□ -1.56
VPS53-217ENST00000575100 TRBV6-7A0A0A0MS04 114 aa5.28□□□□□ -1.56
VPS53-217ENST00000575100 MAP1LC3B2A6NCE7 125 aa5.28□□□□□ -1.56
VPS53-217ENST00000575100 AMBPP02760 352 aa5.28□□□□□ -1.56
VPS53-217ENST00000575100 CRYGDP07320 174 aa5.28□□□□□ -1.56
VPS53-217ENST00000575100 ESDP10768 282 aa5.28□□□□□ -1.56
VPS53-217ENST00000575100 MYCNOSP40205 109 aa5.28□□□□□ -1.56
VPS53-217ENST00000575100 LHFPL1Q86WI0 220 aa5.28□□□□□ -1.56
VPS53-217ENST00000575100 CLDND2Q8NHS1 167 aa5.28□□□□□ -1.56
VPS53-217ENST00000575100 LEAP2Q969E1 77 aa5.28□□□□□ -1.56
VPS53-217ENST00000575100 ARL11Q969Q4 196 aa5.28□□□□□ -1.56
VPS53-217ENST00000575100 GINS3Q9BRX5 216 aa5.28□□□□□ -1.56
VPS53-217ENST00000575100 RNF126Q9BV68 326 aa5.28□□□□□ -1.56
VPS53-217ENST00000575100 MAP1LC3BQ9GZQ8 125 aa5.28□□□□□ -1.56
VPS53-217ENST00000575100 ZNRD1Q9P1U0 126 aa5.28□□□□□ -1.56
VPS53-217ENST00000575100 VSIG4Q9Y279 399 aa5.28□□□□□ -1.56
VPS53-217ENST00000575100 WSB1Q9Y6I7 421 aa5.28□□□□□ -1.56
VPS53-217ENST00000575100 ARHGAP32A7KAX9 2087 aa5.28□□□□□ -1.56
VPS53-217ENST00000575100 DSCAML1Q8TD84 2053 aa5.28□□□□□ -1.56
VPS53-217ENST00000575100 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.28□□□□□ -1.56
VPS53-217ENST00000575100 RBMY1BA6NDE4 496 aaKnown RBP5.27□□□□□ -1.57
VPS53-217ENST00000575100 RBMY1EA6NEQ0 496 aaKnown RBP5.27□□□□□ -1.57
VPS53-217ENST00000575100 K7EQD1 137 aa5.27□□□□□ -1.57
VPS53-217ENST00000575100 NDUFB6O95139 128 aa5.27□□□□□ -1.57
VPS53-217ENST00000575100 RBMY1DP0C7P1 496 aaKnown RBP5.27□□□□□ -1.57
VPS53-217ENST00000575100 RBMY1A1P0DJD3 496 aaKnown RBP5.27□□□□□ -1.57
VPS53-217ENST00000575100 HOXA5P20719 270 aa5.27□□□□□ -1.57
VPS53-217ENST00000575100 PPP1CCP36873 323 aaKnown RBP5.27□□□□□ -1.57
VPS53-217ENST00000575100 TAS2R46P59540 309 aa5.27□□□□□ -1.57
VPS53-217ENST00000575100 ERVFC1-1P60608 527 aa5.27□□□□□ -1.57
VPS53-217ENST00000575100 LRRC10Q5BKY1 277 aa5.27□□□□□ -1.57
VPS53-217ENST00000575100 MUC21Q5SSG8 566 aa5.27□□□□□ -1.57
VPS53-217ENST00000575100 LCE3BQ5TA77 95 aa5.27□□□□□ -1.57
VPS53-217ENST00000575100 UFSP1Q6NVU6 142 aa5.27□□□□□ -1.57
VPS53-217ENST00000575100 PPP1R27Q86WC6 154 aa5.27□□□□□ -1.57
VPS53-217ENST00000575100 OR10G4Q8NGN3 311 aa5.27□□□□□ -1.57
VPS53-217ENST00000575100 OR13C6PQ8NH95 151 aa5.27□□□□□ -1.57
VPS53-217ENST00000575100 CHCHD10Q8WYQ3 142 aaPredicted RBP5.27□□□□□ -1.57
VPS53-217ENST00000575100 RBMXL1Q96E39 390 aaKnown RBP5.27□□□□□ -1.57
VPS53-217ENST00000575100 PGLYRP4Q96LB8 373 aa5.27□□□□□ -1.57
VPS53-217ENST00000575100 GINS4Q9BRT9 223 aa5.27□□□□□ -1.57
VPS53-217ENST00000575100 FXYD6Q9H0Q3 95 aa5.27□□□□□ -1.57
VPS53-217ENST00000575100 NBEAL1Q6ZS30 2694 aa5.27□□□□□ -1.57
VPS53-217ENST00000575100 TRAV8-4A0A0B4J246 113 aa5.27□□□□□ -1.57
VPS53-217ENST00000575100 NAP1L6A6NFF2 107 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms