RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 CRXO43186 299 aaPredicted RBP12.87□□□□□ -0.35
CHD3-214ENST00000572579 PRB4P10163 310 aaPredicted RBP12.87□□□□□ -0.35
CHD3-214ENST00000572579 GALR1P47211 349 aa12.87□□□□□ -0.35
CHD3-214ENST00000572579 AKR1C1Q04828 323 aa12.87□□□□□ -0.35
CHD3-214ENST00000572579 ARL16Q0P5N6 197 aa12.87□□□□□ -0.35
CHD3-214ENST00000572579 SPANXN2Q5MJ10 180 aa12.87□□□□□ -0.35
CHD3-214ENST00000572579 EBLN2Q6P2I7 272 aa12.87□□□□□ -0.35
CHD3-214ENST00000572579 TMEM14EPQ6UXP3 125 aa12.87□□□□□ -0.35
CHD3-214ENST00000572579 CYP2G1PQ6ZSU1 146 aa12.87□□□□□ -0.35
CHD3-214ENST00000572579 RNF182Q8N6D2 247 aa12.87□□□□□ -0.35
CHD3-214ENST00000572579 BPIFCQ8NFQ6 507 aa12.87□□□□□ -0.35
CHD3-214ENST00000572579 SMIM8Q96KF7 97 aa12.87□□□□□ -0.35
CHD3-214ENST00000572579 SLC25A39Q9BZJ4 359 aaPredicted RBP12.87□□□□□ -0.35
CHD3-214ENST00000572579 PSENENQ9NZ42 101 aa12.87□□□□□ -0.35
CHD3-214ENST00000572579 SSSCA1O60232 199 aa12.86□□□□□ -0.35
CHD3-214ENST00000572579 PATE2Q6UY27 113 aa12.86□□□□□ -0.35
CHD3-214ENST00000572579 POM121L12Q8N7R1 296 aa12.86□□□□□ -0.35
CHD3-214ENST00000572579 SHANK2-AS3Q9BTD1 123 aa12.86□□□□□ -0.35
CHD3-214ENST00000572579 TMEM147Q9BVK8 224 aa12.86□□□□□ -0.35
CHD3-214ENST00000572579 RPRMQ9NS64 109 aa12.86□□□□□ -0.35
CHD3-214ENST00000572579 TMEM189A5PLL7 270 aa12.85□□□□□ -0.35
CHD3-214ENST00000572579 NAP1L6A6NFF2 107 aa12.85□□□□□ -0.35
CHD3-214ENST00000572579 MEOX2P50222 304 aa12.85□□□□□ -0.35
CHD3-214ENST00000572579 CNN1P51911 297 aaKnown RBP12.85□□□□□ -0.35
CHD3-214ENST00000572579 PLP1P60201 277 aa12.85□□□□□ -0.35
CHD3-214ENST00000572579 OR11H7Q8NGC8 314 aa12.85□□□□□ -0.35
CHD3-214ENST00000572579 UHRF2Q96PU4 802 aa12.85□□□□□ -0.35
CHD3-214ENST00000572579 NDUFAF3Q9BU61 184 aa12.85□□□□□ -0.35
CHD3-214ENST00000572579 YTHDF2Q9Y5A9 579 aaKnown RBP12.85□□□□□ -0.35
CHD3-214ENST00000572579 LOC102723971A0A1B0GUV8 181 aa12.84□□□□□ -0.35
CHD3-214ENST00000572579 PLA2G10O15496 165 aa12.84□□□□□ -0.35
CHD3-214ENST00000572579 IL5P05113 134 aa12.84□□□□□ -0.35
CHD3-214ENST00000572579 METTL15P1P0C7V9 234 aa12.84□□□□□ -0.35
CHD3-214ENST00000572579 RRAS2P62070 204 aaPredicted RBP12.84□□□□□ -0.35
CHD3-214ENST00000572579 NIPSNAP3BQ9BS92 247 aa12.84□□□□□ -0.35
CHD3-214ENST00000572579 RCL1Q9Y2P8 373 aaKnown RBP12.84□□□□□ -0.35
CHD3-214ENST00000572579 GOLT1BQ9Y3E0 138 aa12.84□□□□□ -0.35
CHD3-214ENST00000572579 A0A1B0GVY2 172 aa12.83□□□□□ -0.36
CHD3-214ENST00000572579 SMCO3A2RU48 225 aa12.83□□□□□ -0.36
CHD3-214ENST00000572579 M0R2Z0 102 aa12.83□□□□□ -0.36
CHD3-214ENST00000572579 MRPS12O15235 138 aaKnown RBP12.83□□□□□ -0.36
CHD3-214ENST00000572579 RTL8CO15255 209 aa12.83□□□□□ -0.36
CHD3-214ENST00000572579 SPINK13Q1W4C9 94 aa12.83□□□□□ -0.36
CHD3-214ENST00000572579 SAMD13Q5VXD3 122 aa12.83□□□□□ -0.36
CHD3-214ENST00000572579 TRIQKQ629K1 86 aa12.83□□□□□ -0.36
CHD3-214ENST00000572579 IGF2BP2-AS1Q96M15 143 aa12.83□□□□□ -0.36
CHD3-214ENST00000572579 ZNF705GA8MUZ8 300 aaPredicted RBP12.82□□□□□ -0.36
CHD3-214ENST00000572579 M0R2N4 97 aa12.82□□□□□ -0.36
CHD3-214ENST00000572579 HYPMO75409 117 aa12.82□□□□□ -0.36
CHD3-214ENST00000572579 HBE1P02100 147 aa12.82□□□□□ -0.36
CHD3-214ENST00000572579 LINC00869P0C866 280 aa12.82□□□□□ -0.36
CHD3-214ENST00000572579 IL7P13232 177 aa12.82□□□□□ -0.36
CHD3-214ENST00000572579 DLK1P80370 383 aa12.82□□□□□ -0.36
CHD3-214ENST00000572579 FGL1Q08830 312 aa12.82□□□□□ -0.36
CHD3-214ENST00000572579 GPR82Q96P67 336 aa12.82□□□□□ -0.36
CHD3-214ENST00000572579 C7orf50Q9BRJ6 194 aaKnown RBP12.82□□□□□ -0.36
CHD3-214ENST00000572579 HIGD1AQ9Y241 93 aa12.82□□□□□ -0.36
CHD3-214ENST00000572579 PLAC8L1A1L4L8 177 aa12.81□□□□□ -0.36
CHD3-214ENST00000572579 K7EPK0 472 aa12.81□□□□□ -0.36
CHD3-214ENST00000572579 IFNA21P01568 189 aa12.81□□□□□ -0.36
CHD3-214ENST00000572579 MBPP02686 304 aaPredicted RBP12.81□□□□□ -0.36
CHD3-214ENST00000572579 P0DMU3 169 aa12.81□□□□□ -0.36
CHD3-214ENST00000572579 FAM231AP0DMU4 169 aa12.81□□□□□ -0.36
CHD3-214ENST00000572579 FAM231CP0DMU5 169 aa12.81□□□□□ -0.36
CHD3-214ENST00000572579 CXCL3P19876 107 aa12.81□□□□□ -0.36
CHD3-214ENST00000572579 AZU1P20160 251 aa12.81□□□□□ -0.36
CHD3-214ENST00000572579 SLC38A11Q08AI6 406 aa12.81□□□□□ -0.36
CHD3-214ENST00000572579 OXA1LQ15070 435 aa12.81□□□□□ -0.36
CHD3-214ENST00000572579 IAH1Q2TAA2 248 aaPredicted RBP12.81□□□□□ -0.36
CHD3-214ENST00000572579 C4orf46Q504U0 113 aa12.81□□□□□ -0.36
CHD3-214ENST00000572579 BAP18Q8IXM2 172 aa12.81□□□□□ -0.36
CHD3-214ENST00000572579 ZBTB8BQ8NAP8 495 aaPredicted RBP12.81□□□□□ -0.36
CHD3-214ENST00000572579 MITD1Q8WV92 249 aa12.81□□□□□ -0.36
CHD3-214ENST00000572579 TRAV12-2A0A075B6T6 113 aa12.8□□□□□ -0.36
CHD3-214ENST00000572579 C7orf66A4D0T2 115 aa12.8□□□□□ -0.36
CHD3-214ENST00000572579 SNRPCP09234 159 aaKnown RBP12.8□□□□□ -0.36
CHD3-214ENST00000572579 OR5G3P0C626 314 aa12.8□□□□□ -0.36
CHD3-214ENST00000572579 RRN3P1Q2M238 152 aa12.8□□□□□ -0.36
CHD3-214ENST00000572579 MORN5Q5VZ52 161 aa12.8□□□□□ -0.36
CHD3-214ENST00000572579 GSKIPQ9P0R6 139 aa12.8□□□□□ -0.36
CHD3-214ENST00000572579 A0A087X0K7 114 aa12.79□□□□□ -0.36
CHD3-214ENST00000572579 FNDC10F2Z333 226 aa12.79□□□□□ -0.36
CHD3-214ENST00000572579 SCGB1D2O95969 90 aa12.79□□□□□ -0.36
CHD3-214ENST00000572579 HTN3P15516 51 aa12.79□□□□□ -0.36
CHD3-214ENST00000572579 RPL7P18124 248 aaKnown RBP12.79□□□□□ -0.36
CHD3-214ENST00000572579 INPP1P49441 399 aa12.79□□□□□ -0.36
CHD3-214ENST00000572579 FCN2Q15485 313 aa12.79□□□□□ -0.36
CHD3-214ENST00000572579 ARL6Q9H0F7 186 aa12.79□□□□□ -0.36
CHD3-214ENST00000572579 C11orf1Q9H5F2 150 aa12.79□□□□□ -0.36
CHD3-214ENST00000572579 NPVFQ9HCQ7 196 aa12.79□□□□□ -0.36
CHD3-214ENST00000572579 CCSO14618 274 aa12.78□□□□□ -0.36
CHD3-214ENST00000572579 TSC22D2O75157 780 aa12.78□□□□□ -0.36
CHD3-214ENST00000572579 DUSP14O95147 198 aaKnown RBP12.78□□□□□ -0.36
CHD3-214ENST00000572579 TAS2R30P59541 319 aa12.78□□□□□ -0.36
CHD3-214ENST00000572579 RAP2BP61225 183 aa12.78□□□□□ -0.36
CHD3-214ENST00000572579 SELENOTP62341 195 aa12.78□□□□□ -0.36
CHD3-214ENST00000572579 TMEM88Q6PEY1 159 aa12.78□□□□□ -0.36
CHD3-214ENST00000572579 Q6ZR54 194 aa12.78□□□□□ -0.36
CHD3-214ENST00000572579 ZNF738Q8NE65 137 aa12.78□□□□□ -0.36
CHD3-214ENST00000572579 OR10P1Q8NGE3 313 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms